RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 LINC01558Q9Y6Z2 57 aa8.2□□□□□ -1.1
VPS33A-208ENST00000543633 PSORS1C2Q9UIG4 136 aa8.19□□□□□ -1.1
VPS33A-208ENST00000543633 NDUFS5O43920 106 aa8.18□□□□□ -1.1
VPS33A-208ENST00000543633 VPS13DQ5THJ4 4388 aa8.16□□□□□ -1.1
VPS33A-208ENST00000543633 RTL8CO15255 209 aa8.16□□□□□ -1.1
VPS33A-208ENST00000543633 ATP11AUNQ6ZP68 121 aa8.13□□□□□ -1.11
VPS33A-208ENST00000543633 SRRM2Q9UQ35 2752 aaKnown RBP8.13□□□□□ -1.11
VPS33A-208ENST00000543633 A6NED7 52 aa8.12□□□□□ -1.11
VPS33A-208ENST00000543633 HRES1P13985 223 aa8.12□□□□□ -1.11
VPS33A-208ENST00000543633 CDC42SE1Q9NRR8 79 aa8.12□□□□□ -1.11
VPS33A-208ENST00000543633 C8orf87E5RJ46 101 aa8.12□□□□□ -1.11
VPS33A-208ENST00000543633 KRTAP13-3Q3SY46 172 aa8.12□□□□□ -1.11
VPS33A-208ENST00000543633 A0A087X002 238 aa8.09□□□□□ -1.11
VPS33A-208ENST00000543633 A8MU10 97 aa8.09□□□□□ -1.11
VPS33A-208ENST00000543633 LCA10Q71F78 164 aa8.09□□□□□ -1.11
VPS33A-208ENST00000543633 NOTCH2NLQ7Z3S9 236 aa8.09□□□□□ -1.11
VPS33A-208ENST00000543633 IGLV7-43P04211 117 aa8.07□□□□□ -1.12
VPS33A-208ENST00000543633 SSBP3-AS1Q7Z2R9 100 aa8.07□□□□□ -1.12
VPS33A-208ENST00000543633 SPAG11AQ6PDA7 123 aa8.07□□□□□ -1.12
VPS33A-208ENST00000543633 KMT2AQ03164 3969 aa8.05□□□□□ -1.12
VPS33A-208ENST00000543633 ANAPC11Q9NYG5 84 aa8.05□□□□□ -1.12
VPS33A-208ENST00000543633 KTN1-AS1Q86SY8 53 aa8.05□□□□□ -1.12
VPS33A-208ENST00000543633 Q5W150 140 aa8.03□□□□□ -1.12
VPS33A-208ENST00000543633 ACYP2P14621 99 aa8.02□□□□□ -1.13
VPS33A-208ENST00000543633 DNAH17Q9UFH2 4485 aa8.02□□□□□ -1.13
VPS33A-208ENST00000543633 A6NN06 94 aa8.01□□□□□ -1.13
VPS33A-208ENST00000543633 SPINK6Q6UWN8 80 aa8.01□□□□□ -1.13
VPS33A-208ENST00000543633 SPTSSBQ8NFR3 76 aa8.01□□□□□ -1.13
VPS33A-208ENST00000543633 CIRBP-AS1Q8TBR5 109 aa8□□□□□ -1.13
VPS33A-208ENST00000543633 DNAH8Q96JB1 4490 aa8□□□□□ -1.13
VPS33A-208ENST00000543633 FAM229AH3BQW9 127 aa7.99□□□□□ -1.13
VPS33A-208ENST00000543633 DMAC1Q96GE9 116 aa7.99□□□□□ -1.13
VPS33A-208ENST00000543633 C1orf134Q5TEV5 83 aa7.98□□□□□ -1.13
VPS33A-208ENST00000543633 HECTD4Q9Y4D8 3996 aa7.98□□□□□ -1.13
VPS33A-208ENST00000543633 DNAH2Q9P225 4427 aa7.98□□□□□ -1.13
VPS33A-208ENST00000543633 LY6G6CO95867 125 aa7.98□□□□□ -1.13
VPS33A-208ENST00000543633 DNAH6Q9C0G6 4158 aa7.96□□□□□ -1.13
VPS33A-208ENST00000543633 ALMS1Q8TCU4 4167 aa7.95□□□□□ -1.14
VPS33A-208ENST00000543633 SPINK7P58062 85 aa7.95□□□□□ -1.14
VPS33A-208ENST00000543633 LINC00313P59037 77 aa7.95□□□□□ -1.14
VPS33A-208ENST00000543633 PRR26Q8N8Z3 221 aa7.93□□□□□ -1.14
VPS33A-208ENST00000543633 IGKV2-30P06310 120 aa7.92□□□□□ -1.14
VPS33A-208ENST00000543633 HYDINQ4G0P3 5121 aa7.9□□□□□ -1.14
VPS33A-208ENST00000543633 C7orf65Q6ZTY9 151 aa7.9□□□□□ -1.14
VPS33A-208ENST00000543633 FRAS1Q86XX4 4008 aa7.87□□□□□ -1.15
VPS33A-208ENST00000543633 KRTAP16-1A8MUX0 517 aa7.86□□□□□ -1.15
VPS33A-208ENST00000543633 KRTAP13-2Q52LG2 175 aa7.86□□□□□ -1.15
VPS33A-208ENST00000543633 SACSQ9NZJ4 4579 aa7.85□□□□□ -1.15
VPS33A-208ENST00000543633 Q6ZSA8 131 aa7.84□□□□□ -1.15
VPS33A-208ENST00000543633 RBM12B-AS1Q9P1G2 102 aa7.82□□□□□ -1.16
VPS33A-208ENST00000543633 A0A1B0GU69 56 aa7.81□□□□□ -1.16
VPS33A-208ENST00000543633 FAT2Q9NYQ8 4349 aa7.81□□□□□ -1.16
VPS33A-208ENST00000543633 DNAH11Q96DT5 4516 aa7.79□□□□□ -1.16
VPS33A-208ENST00000543633 KRTAP10-2P60368 255 aa7.78□□□□□ -1.16
VPS33A-208ENST00000543633 SPATA8Q6RVD6 105 aa7.78□□□□□ -1.16
VPS33A-208ENST00000543633 KRTAP1-4P0C5Y4 121 aa7.76□□□□□ -1.17
VPS33A-208ENST00000543633 PKD1P98161 4303 aa7.76□□□□□ -1.17
VPS33A-208ENST00000543633 IGKV2D-30A0A075B6S6 120 aa7.75□□□□□ -1.17
VPS33A-208ENST00000543633 RETNLBQ9BQ08 111 aa7.75□□□□□ -1.17
VPS33A-208ENST00000543633 UQCR11O14957 56 aa7.73□□□□□ -1.17
VPS33A-208ENST00000543633 KMT2CQ8NEZ4 4911 aaKnown RBP7.72□□□□□ -1.17
VPS33A-208ENST00000543633 KRTAP10-1P60331 282 aa7.72□□□□□ -1.17
VPS33A-208ENST00000543633 DNAH5Q8TE73 4624 aa7.72□□□□□ -1.17
VPS33A-208ENST00000543633 SPINK1P00995 79 aa7.71□□□□□ -1.17
VPS33A-208ENST00000543633 C4orf48Q5BLP8 95 aa7.71□□□□□ -1.18
VPS33A-208ENST00000543633 RPS29P62273 56 aaKnown RBP7.7□□□□□ -1.18
VPS33A-208ENST00000543633 MIR22HGQ0VDD5 57 aa7.69□□□□□ -1.18
VPS33A-208ENST00000543633 RYR2Q92736 4967 aa7.68□□□□□ -1.18
VPS33A-208ENST00000543633 PLA2G1BP04054 148 aaKnown RBP7.68□□□□□ -1.18
VPS33A-208ENST00000543633 TYMSOSQ8TAI1 123 aa7.66□□□□□ -1.18
VPS33A-208ENST00000543633 PKHD1P08F94 4074 aa7.65□□□□□ -1.18
VPS33A-208ENST00000543633 A0A1B0GVY2 172 aa7.61□□□□□ -1.19
VPS33A-208ENST00000543633 LINC00304Q8N9R0 145 aa7.57□□□□□ -1.2
VPS33A-208ENST00000543633 LRP1BQ9NZR2 4599 aa7.56□□□□□ -1.2
VPS33A-208ENST00000543633 RYR3Q15413 4870 aa7.54□□□□□ -1.2
VPS33A-208ENST00000543633 PRAC1Q96KF2 57 aa7.52□□□□□ -1.2
VPS33A-208ENST00000543633 C20orf166-AS1Q96NR2 134 aa7.51□□□□□ -1.21
VPS33A-208ENST00000543633 DYNC1H1Q14204 4646 aaKnown RBP7.51□□□□□ -1.21
VPS33A-208ENST00000543633 A8MUU9 505 aa7.51□□□□□ -1.21
VPS33A-208ENST00000543633 Q8N1X5 172 aa7.51□□□□□ -1.21
VPS33A-208ENST00000543633 ADM2Q7Z4H4 148 aa7.48□□□□□ -1.21
VPS33A-208ENST00000543633 VPS13BQ7Z7G8 4022 aa7.47□□□□□ -1.21
VPS33A-208ENST00000543633 APOBP04114 4563 aaKnown RBP7.45□□□□□ -1.22
VPS33A-208ENST00000543633 LINC01554Q52M75 96 aa7.44□□□□□ -1.22
VPS33A-208ENST00000543633 H0YAA0 97 aa7.38□□□□□ -1.23
VPS33A-208ENST00000543633 KRTAP3-1Q9BYR8 98 aa7.37□□□□□ -1.23
VPS33A-208ENST00000543633 SMR3BP02814 79 aaPredicted RBP7.36□□□□□ -1.23
VPS33A-208ENST00000543633 A0A1B0GU33 70 aa7.35□□□□□ -1.23
VPS33A-208ENST00000543633 FAT1Q14517 4588 aa7.35□□□□□ -1.23
VPS33A-208ENST00000543633 C9orf92A6NGG3 77 aa7.35□□□□□ -1.23
VPS33A-208ENST00000543633 KRTAP10-4P60372 401 aaPredicted RBP7.35□□□□□ -1.23
VPS33A-208ENST00000543633 H1FX-AS1Q4G0G2 97 aa7.34□□□□□ -1.23
VPS33A-208ENST00000543633 PKHD1L1Q86WI1 4243 aa7.34□□□□□ -1.23
VPS33A-208ENST00000543633 CSAG1Q6PB30 78 aa7.34□□□□□ -1.24
VPS33A-208ENST00000543633 COX6B2Q6YFQ2 88 aa7.3□□□□□ -1.24
VPS33A-208ENST00000543633 HSPG2P98160 4391 aa7.3□□□□□ -1.24
VPS33A-208ENST00000543633 H3BS24 57 aa7.28□□□□□ -1.24
VPS33A-208ENST00000543633 EPPK1P58107 5090 aaKnown RBP7.26□□□□□ -1.25
VPS33A-208ENST00000543633 KRTAP17-1Q9BYP8 105 aa7.22□□□□□ -1.25
VPS33A-208ENST00000543633 RYR1P21817 5038 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 178.8 ms