RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 LCA10Q71F78 164 aa8.05□□□□□ -1.12
USP3-204ENST00000540797 M0QZ58 72 aa8.03□□□□□ -1.12
USP3-204ENST00000540797 CELSR2Q9HCU4 2923 aa8.02□□□□□ -1.13
USP3-204ENST00000540797 ZANQ9Y493 2812 aa8□□□□□ -1.13
USP3-204ENST00000540797 ASH1LQ9NR48 2969 aaKnown RBP8□□□□□ -1.13
USP3-204ENST00000540797 USP34Q70CQ2 3546 aa7.99□□□□□ -1.13
USP3-204ENST00000540797 Q5XG85 94 aa7.98□□□□□ -1.13
USP3-204ENST00000540797 CFAP47Q6ZTR5 3102 aa7.98□□□□□ -1.13
USP3-204ENST00000540797 ADM2Q7Z4H4 148 aa7.97□□□□□ -1.13
USP3-204ENST00000540797 DCHS2Q6V1P9 2916 aa7.95□□□□□ -1.14
USP3-204ENST00000540797 H1FX-AS1Q4G0G2 97 aa7.95□□□□□ -1.14
USP3-204ENST00000540797 Q5VV11 94 aa7.95□□□□□ -1.14
USP3-204ENST00000540797 RPL37P61927 97 aaKnown RBP7.93□□□□□ -1.14
USP3-204ENST00000540797 LUZP6Q538Z0 58 aa7.93□□□□□ -1.14
USP3-204ENST00000540797 PLAC4Q8WY50 150 aa7.91□□□□□ -1.14
USP3-204ENST00000540797 HRNRQ86YZ3 2850 aaPredicted RBP7.89□□□□□ -1.15
USP3-204ENST00000540797 SPEGQ15772 3267 aa7.84□□□□□ -1.15
USP3-204ENST00000540797 SPATA8Q6RVD6 105 aa7.83□□□□□ -1.16
USP3-204ENST00000540797 NF1P21359 2839 aa7.81□□□□□ -1.16
USP3-204ENST00000540797 C20orf166-AS1Q96NR2 134 aa7.79□□□□□ -1.16
USP3-204ENST00000540797 ROMO1P60602 79 aa7.78□□□□□ -1.16
USP3-204ENST00000540797 PRAC1Q96KF2 57 aa7.77□□□□□ -1.17
USP3-204ENST00000540797 LOC400499M0QZD8 3231 aa7.77□□□□□ -1.17
USP3-204ENST00000540797 A8MUU9 505 aa7.76□□□□□ -1.17
USP3-204ENST00000540797 KRTAP1-4P0C5Y4 121 aa7.75□□□□□ -1.17
USP3-204ENST00000540797 FBN2P35556 2912 aa7.74□□□□□ -1.17
USP3-204ENST00000540797 TENM2Q9NT68 2774 aa7.67□□□□□ -1.18
USP3-204ENST00000540797 TENM1Q9UKZ4 2725 aa7.67□□□□□ -1.18
USP3-204ENST00000540797 MXRA5Q9NR99 2828 aa7.67□□□□□ -1.18
USP3-204ENST00000540797 XP32Q5T750 250 aa7.65□□□□□ -1.19
USP3-204ENST00000540797 TENM3Q9P273 2699 aa7.63□□□□□ -1.19
USP3-204ENST00000540797 A8MU10 97 aa7.59□□□□□ -1.19
USP3-204ENST00000540797 TPRXLQ17RH7 258 aa7.56□□□□□ -1.2
USP3-204ENST00000540797 MYO15AQ9UKN7 3530 aa7.54□□□□□ -1.2
USP3-204ENST00000540797 CELSR1Q9NYQ6 3014 aa7.54□□□□□ -1.2
USP3-204ENST00000540797 A0A1B0GVY2 172 aa7.53□□□□□ -1.2
USP3-204ENST00000540797 PDZD2O15018 2839 aa7.5□□□□□ -1.21
USP3-204ENST00000540797 RELNP78509 3460 aa7.5□□□□□ -1.21
USP3-204ENST00000540797 DCHS1Q96JQ0 3298 aa7.5□□□□□ -1.21
USP3-204ENST00000540797 PKD1L1Q8TDX9 2849 aa7.47□□□□□ -1.21
USP3-204ENST00000540797 KRTAP13-3Q3SY46 172 aa7.43□□□□□ -1.22
USP3-204ENST00000540797 KRTAP10-8P60410 259 aa7.39□□□□□ -1.23
USP3-204ENST00000540797 KRTAP16-1A8MUX0 517 aa7.39□□□□□ -1.23
USP3-204ENST00000540797 TNP1P09430 55 aa7.38□□□□□ -1.23
USP3-204ENST00000540797 WDFY3Q8IZQ1 3526 aa7.37□□□□□ -1.23
USP3-204ENST00000540797 A0A0A0MQY5 61 aa7.36□□□□□ -1.23
USP3-204ENST00000540797 OTOGQ6ZRI0 2925 aa7.35□□□□□ -1.23
USP3-204ENST00000540797 KRTAP10-10P60014 251 aa7.32□□□□□ -1.24
USP3-204ENST00000540797 VWFP04275 2813 aa7.3□□□□□ -1.24
USP3-204ENST00000540797 KRTAP25-1Q3LHN0 102 aa7.3□□□□□ -1.24
USP3-204ENST00000540797 NBPF19A0A087WUL8 3843 aa7.3□□□□□ -1.24
USP3-204ENST00000540797 LAMA5O15230 3695 aa7.29□□□□□ -1.24
USP3-204ENST00000540797 A6NN06 94 aa7.29□□□□□ -1.24
USP3-204ENST00000540797 TGP01266 2768 aa7.28□□□□□ -1.24
USP3-204ENST00000540797 ASPMQ8IZT6 3477 aa7.26□□□□□ -1.25
USP3-204ENST00000540797 FBN1P35555 2871 aaKnown RBP7.22□□□□□ -1.25
USP3-204ENST00000540797 ZFHX3Q15911 3703 aa7.16□□□□□ -1.26
USP3-204ENST00000540797 ZFHX4Q86UP3 3567 aa7.13□□□□□ -1.27
USP3-204ENST00000540797 MUC3AQ02505 3323 aa7.12□□□□□ -1.27
USP3-204ENST00000540797 DMDP11532 3685 aa7.11□□□□□ -1.27
USP3-204ENST00000540797 PRO2289Q9P1D8 64 aa7.11□□□□□ -1.27
USP3-204ENST00000540797 P0C880 135 aa7.1□□□□□ -1.27
USP3-204ENST00000540797 H0YAA0 97 aa7.09□□□□□ -1.27
USP3-204ENST00000540797 ANK3Q12955 4377 aaKnown RBP7.08□□□□□ -1.28
USP3-204ENST00000540797 PP632Q6XCG6 107 aa7.08□□□□□ -1.28
USP3-204ENST00000540797 H3BS24 57 aa7.07□□□□□ -1.28
USP3-204ENST00000540797 C10orf95Q9H7T3 257 aa7.05□□□□□ -1.28
USP3-204ENST00000540797 SRRM2Q9UQ35 2752 aaKnown RBP6.96□□□□□ -1.3
USP3-204ENST00000540797 SMG1Q96Q15 3661 aaKnown RBP6.94□□□□□ -1.3
USP3-204ENST00000540797 CSMD1Q96PZ7 3565 aa6.9□□□□□ -1.3
USP3-204ENST00000540797 NDUFAF8A1L188 74 aa6.9□□□□□ -1.31
USP3-204ENST00000540797 CSMD2Q7Z408 3487 aa6.89□□□□□ -1.31
USP3-204ENST00000540797 FBN3Q75N90 2809 aa6.85□□□□□ -1.31
USP3-204ENST00000540797 MT1HL1P0DM35 61 aa6.83□□□□□ -1.32
USP3-204ENST00000540797 TRRAPQ9Y4A5 3859 aa6.8□□□□□ -1.32
USP3-204ENST00000540797 KRTAP3-1Q9BYR8 98 aa6.78□□□□□ -1.32
USP3-204ENST00000540797 SPENQ96T58 3664 aaKnown RBP6.76□□□□□ -1.33
USP3-204ENST00000540797 MEGF8Q7Z7M0 2845 aa6.76□□□□□ -1.33
USP3-204ENST00000540797 KRTAP12-2P59991 146 aa6.75□□□□□ -1.33
USP3-204ENST00000540797 SVEP1Q4LDE5 3571 aa6.74□□□□□ -1.33
USP3-204ENST00000540797 KRTAP4-5Q9BYR2 181 aa6.73□□□□□ -1.33
USP3-204ENST00000540797 COL7A1Q02388 2944 aa6.68□□□□□ -1.34
USP3-204ENST00000540797 KRTAP10-4P60372 401 aaPredicted RBP6.67□□□□□ -1.34
USP3-204ENST00000540797 KRTAP12-1P59990 96 aa6.65□□□□□ -1.35
USP3-204ENST00000540797 BSNQ9UPA5 3926 aa6.64□□□□□ -1.35
USP3-204ENST00000540797 KRTAP13-4Q3LI77 160 aa6.63□□□□□ -1.35
USP3-204ENST00000540797 HUWE1Q7Z6Z7 4374 aaKnown RBP6.63□□□□□ -1.35
USP3-204ENST00000540797 CUBNO60494 3623 aa6.55□□□□□ -1.36
USP3-204ENST00000540797 KRTAP10-6P60371 365 aaPredicted RBP6.52□□□□□ -1.37
USP3-204ENST00000540797 ALMS1Q8TCU4 4167 aa6.5□□□□□ -1.37
USP3-204ENST00000540797 KRTAP3-3Q9BYR6 98 aa6.37□□□□□ -1.39
USP3-204ENST00000540797 KRTAP15-1Q3LI76 137 aa6.36□□□□□ -1.39
USP3-204ENST00000540797 DNAH9Q9NYC9 4486 aa6.35□□□□□ -1.39
USP3-204ENST00000540797 VPS13CQ709C8 3753 aa6.34□□□□□ -1.39
USP3-204ENST00000540797 KRTAP3-2Q9BYR7 98 aa6.32□□□□□ -1.4
USP3-204ENST00000540797 AKAP9Q99996 3911 aa6.25□□□□□ -1.41
USP3-204ENST00000540797 DNAH5Q8TE73 4624 aa6.24□□□□□ -1.41
USP3-204ENST00000540797 KRTAP10-12P60413 245 aa6.22□□□□□ -1.41
USP3-204ENST00000540797 ZNF469Q96JG9 3925 aaPredicted RBP6.19□□□□□ -1.42
USP3-204ENST00000540797 DNHD1Q96M86 4753 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms