RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	DMXL1	Q9Y485	3027 aa		4.57	□□□□□ -1.68
YBX3-208	ENST00000540447	COL12A1	Q99715	3063 aa		4.57	□□□□□ -1.68
YBX3-208	ENST00000540447	KRTAP15-1	Q3LI76	137 aa		4.56	□□□□□ -1.68
YBX3-208	ENST00000540447		Q5VSD8	79 aa		4.56	□□□□□ -1.68
YBX3-208	ENST00000540447	KRTAP13-3	Q3SY46	172 aa		4.55	□□□□□ -1.68
YBX3-208	ENST00000540447	ITPR3	Q14573	2671 aa		4.55	□□□□□ -1.68
YBX3-208	ENST00000540447	HECTD1	Q9ULT8	2610 aa		4.54	□□□□□ -1.68
YBX3-208	ENST00000540447	ZNF292	O60281	2723 aa		4.54	□□□□□ -1.68
YBX3-208	ENST00000540447	KRTAP12-2	P59991	146 aa		4.53	□□□□□ -1.68
YBX3-208	ENST00000540447	DCHS1	Q96JQ0	3298 aa		4.53	□□□□□ -1.68
YBX3-208	ENST00000540447	BAHCC1	Q9P281	2608 aa		4.53	□□□□□ -1.68
YBX3-208	ENST00000540447	DMXL2	Q8TDJ6	3036 aa		4.53	□□□□□ -1.68
YBX3-208	ENST00000540447	LOC400499	M0QZD8	3231 aa		4.53	□□□□□ -1.68
YBX3-208	ENST00000540447	STAB1	Q9NY15	2570 aa		4.53	□□□□□ -1.68
YBX3-208	ENST00000540447	CFAP47	Q6ZTR5	3102 aa		4.52	□□□□□ -1.69
YBX3-208	ENST00000540447	WDFY3	Q8IZQ1	3526 aa		4.52	□□□□□ -1.69
YBX3-208	ENST00000540447	LAMA5	O15230	3695 aa		4.5	□□□□□ -1.69
YBX3-208	ENST00000540447	ZZEF1	O43149	2961 aa		4.49	□□□□□ -1.69
YBX3-208	ENST00000540447	COL6A5	A8TX70	2615 aa		4.49	□□□□□ -1.69
YBX3-208	ENST00000540447	INE1	O15225	51 aa		4.49	□□□□□ -1.69
YBX3-208	ENST00000540447	CFAP46	Q8IYW2	2715 aa		4.48	□□□□□ -1.69
YBX3-208	ENST00000540447	ATM	Q13315	3056 aa		4.46	□□□□□ -1.69
YBX3-208	ENST00000540447	PRO2289	Q9P1D8	64 aa		4.45	□□□□□ -1.7
YBX3-208	ENST00000540447	TEP1	Q99973	2627 aa	Known RBP	4.44	□□□□□ -1.7
YBX3-208	ENST00000540447	MAST4	O15021	2626 aa		4.44	□□□□□ -1.7
YBX3-208	ENST00000540447	UBR5	O95071	2799 aa	Predicted RBP	4.43	□□□□□ -1.7
YBX3-208	ENST00000540447	KRTAP12-1	P59990	96 aa		4.43	□□□□□ -1.7
YBX3-208	ENST00000540447	KRTAP13-4	Q3LI77	160 aa		4.42	□□□□□ -1.7
YBX3-208	ENST00000540447	APC	P25054	2843 aa		4.41	□□□□□ -1.7
YBX3-208	ENST00000540447	LRBA	P50851	2863 aa		4.41	□□□□□ -1.7
YBX3-208	ENST00000540447	NSD1	Q96L73	2696 aa	Predicted RBP	4.4	□□□□□ -1.7
YBX3-208	ENST00000540447	KALRN	O60229	2985 aa		4.39	□□□□□ -1.71
YBX3-208	ENST00000540447	RELN	P78509	3460 aa		4.38	□□□□□ -1.71
YBX3-208	ENST00000540447	ADGRG4	Q8IZF6	3080 aa		4.38	□□□□□ -1.71
YBX3-208	ENST00000540447	KRTAP1-4	P0C5Y4	121 aa		4.38	□□□□□ -1.71
YBX3-208	ENST00000540447	XP32	Q5T750	250 aa		4.36	□□□□□ -1.71
YBX3-208	ENST00000540447	NBEA	Q8NFP9	2946 aa		4.35	□□□□□ -1.71
YBX3-208	ENST00000540447	TEX15	Q9BXT5	2789 aa		4.34	□□□□□ -1.71
YBX3-208	ENST00000540447	IGSF10	Q6WRI0	2623 aa		4.34	□□□□□ -1.71
YBX3-208	ENST00000540447	FLNC	Q14315	2725 aa		4.34	□□□□□ -1.72
YBX3-208	ENST00000540447	TACC2	O95359	2948 aa		4.33	□□□□□ -1.72
YBX3-208	ENST00000540447	ZFHX4	Q86UP3	3567 aa		4.33	□□□□□ -1.72
YBX3-208	ENST00000540447	SMG1	Q96Q15	3661 aa	Known RBP	4.32	□□□□□ -1.72
YBX3-208	ENST00000540447	ASH1L	Q9NR48	2969 aa	Known RBP	4.32	□□□□□ -1.72
YBX3-208	ENST00000540447	SETX	Q7Z333	2677 aa	Known RBP	4.32	□□□□□ -1.72
YBX3-208	ENST00000540447	UTP20	O75691	2785 aa	Known RBP	4.29	□□□□□ -1.72
YBX3-208	ENST00000540447		A0A1B0GVY2	172 aa		4.27	□□□□□ -1.73
YBX3-208	ENST00000540447	TG	P01266	2768 aa		4.26	□□□□□ -1.73
YBX3-208	ENST00000540447	KRTAP3-1	Q9BYR8	98 aa		4.26	□□□□□ -1.73
YBX3-208	ENST00000540447	CRYBG3	Q68DQ2	2970 aa		4.25	□□□□□ -1.73
YBX3-208	ENST00000540447	KRTAP10-6	P60371	365 aa	Predicted RBP	4.23	□□□□□ -1.73
YBX3-208	ENST00000540447	ITPR2	Q14571	2701 aa		4.19	□□□□□ -1.74
YBX3-208	ENST00000540447	HIVEP1	P15822	2718 aa		4.16	□□□□□ -1.74
YBX3-208	ENST00000540447	CELSR2	Q9HCU4	2923 aa		4.13	□□□□□ -1.75
YBX3-208	ENST00000540447	ZAN	Q9Y493	2812 aa		4.13	□□□□□ -1.75
YBX3-208	ENST00000540447	DCHS2	Q6V1P9	2916 aa		4.13	□□□□□ -1.75
YBX3-208	ENST00000540447	KRTAP10-10	P60014	251 aa		4.11	□□□□□ -1.75
YBX3-208	ENST00000540447	CUBN	O60494	3623 aa		4.11	□□□□□ -1.75
YBX3-208	ENST00000540447	SVEP1	Q4LDE5	3571 aa		4.09	□□□□□ -1.75
YBX3-208	ENST00000540447	KRTAP23-1	A1A580	65 aa		4.08	□□□□□ -1.76
YBX3-208	ENST00000540447	CSMD1	Q96PZ7	3565 aa		4.08	□□□□□ -1.76
YBX3-208	ENST00000540447	NIPBL	Q6KC79	2804 aa	eCLIP	4.07	□□□□□ -1.76
YBX3-208	ENST00000540447	SPEN	Q96T58	3664 aa	Known RBP	4.05	□□□□□ -1.76
YBX3-208	ENST00000540447	KMT2B	Q9UMN6	2715 aa	Predicted RBP	4.05	□□□□□ -1.76
YBX3-208	ENST00000540447	KRTAP3-2	Q9BYR7	98 aa		4.05	□□□□□ -1.76
YBX3-208	ENST00000540447	CSMD2	Q7Z408	3487 aa		4.05	□□□□□ -1.76
YBX3-208	ENST00000540447	ZFHX3	Q15911	3703 aa		4.04	□□□□□ -1.76
YBX3-208	ENST00000540447	NF1	P21359	2839 aa		4.03	□□□□□ -1.76
YBX3-208	ENST00000540447	CELSR1	Q9NYQ6	3014 aa		4.01	□□□□□ -1.77
YBX3-208	ENST00000540447	NBPF19	A0A087WUL8	3843 aa		4.01	□□□□□ -1.77
YBX3-208	ENST00000540447	FBN2	P35556	2912 aa		3.99	□□□□□ -1.77
YBX3-208	ENST00000540447	TENM2	Q9NT68	2774 aa		3.99	□□□□□ -1.77
YBX3-208	ENST00000540447	TENM4	Q6N022	2769 aa		3.99	□□□□□ -1.77
YBX3-208	ENST00000540447	SRRM2	Q9UQ35	2752 aa	Known RBP	3.98	□□□□□ -1.77
YBX3-208	ENST00000540447	HRNR	Q86YZ3	2850 aa	Predicted RBP	3.98	□□□□□ -1.77
YBX3-208	ENST00000540447	KRTAP3-3	Q9BYR6	98 aa		3.96	□□□□□ -1.78
YBX3-208	ENST00000540447	TENM3	Q9P273	2699 aa		3.95	□□□□□ -1.78
YBX3-208	ENST00000540447	TENM1	Q9UKZ4	2725 aa		3.92	□□□□□ -1.78
YBX3-208	ENST00000540447	PDZD2	O15018	2839 aa		3.91	□□□□□ -1.78
YBX3-208	ENST00000540447	BSN	Q9UPA5	3926 aa		3.9	□□□□□ -1.78
YBX3-208	ENST00000540447	KRTAP21-3	Q3LHN1	58 aa		3.89	□□□□□ -1.79
YBX3-208	ENST00000540447	OTOG	Q6ZRI0	2925 aa		3.89	□□□□□ -1.79
YBX3-208	ENST00000540447	MXRA5	Q9NR99	2828 aa		3.88	□□□□□ -1.79
YBX3-208	ENST00000540447	FBN1	P35555	2871 aa	Known RBP	3.85	□□□□□ -1.79
YBX3-208	ENST00000540447	VPS13C	Q709C8	3753 aa		3.83	□□□□□ -1.8
YBX3-208	ENST00000540447	KRTAP12-3	P60328	96 aa		3.81	□□□□□ -1.8
YBX3-208	ENST00000540447	KRTAP10-12	P60413	245 aa		3.8	□□□□□ -1.8
YBX3-208	ENST00000540447	LCE3A	Q5TA76	89 aa		3.78	□□□□□ -1.8
YBX3-208	ENST00000540447	PKD1L1	Q8TDX9	2849 aa		3.75	□□□□□ -1.81
YBX3-208	ENST00000540447	VWF	P04275	2813 aa		3.74	□□□□□ -1.81
YBX3-208	ENST00000540447	CRCT1	Q9UGL9	99 aa		3.72	□□□□□ -1.81
YBX3-208	ENST00000540447	ZNF469	Q96JG9	3925 aa	Predicted RBP	3.7	□□□□□ -1.82
YBX3-208	ENST00000540447	KRTAP10-5	P60370	271 aa		3.68	□□□□□ -1.82
YBX3-208	ENST00000540447	TRRAP	Q9Y4A5	3859 aa		3.66	□□□□□ -1.82
YBX3-208	ENST00000540447	MEGF8	Q7Z7M0	2845 aa		3.65	□□□□□ -1.82
YBX3-208	ENST00000540447	LOR	P23490	312 aa	Predicted RBP	3.63	□□□□□ -1.83
YBX3-208	ENST00000540447	FBN3	Q75N90	2809 aa		3.59	□□□□□ -1.83
YBX3-208	ENST00000540447	COL7A1	Q02388	2944 aa		3.57	□□□□□ -1.84
YBX3-208	ENST00000540447	ALMS1	Q8TCU4	4167 aa		3.56	□□□□□ -1.84
YBX3-208	ENST00000540447	ANK3	Q12955	4377 aa	Known RBP	3.51	□□□□□ -1.85

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