RNA–Protein interactions for RNA: ENST00000538291.5

SCARB1-205, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5

Gene SCARB1, Length 5,527 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-205ENST00000538291 NDUFAF8A1L188 74 aa8.94□□□□□ -0.98
SCARB1-205ENST00000538291 TPRXLQ17RH7 258 aa8.92□□□□□ -0.98
SCARB1-205ENST00000538291 PP632Q6XCG6 107 aa8.92□□□□□ -0.98
SCARB1-205ENST00000538291 DMXL2Q8TDJ6 3036 aa8.91□□□□□ -0.98
SCARB1-205ENST00000538291 VPS13AQ96RL7 3174 aa8.9□□□□□ -0.99
SCARB1-205ENST00000538291 CRYBG3Q68DQ2 2970 aa8.89□□□□□ -0.99
SCARB1-205ENST00000538291 ATMQ13315 3056 aa8.88□□□□□ -0.99
SCARB1-205ENST00000538291 COL12A1Q99715 3063 aa8.86□□□□□ -0.99
SCARB1-205ENST00000538291 BRCA2P51587 3418 aa8.86□□□□□ -0.99
SCARB1-205ENST00000538291 KALRNO60229 2985 aa8.85□□□□□ -0.99
SCARB1-205ENST00000538291 ASH1LQ9NR48 2969 aaKnown RBP8.84□□□□□ -0.99
SCARB1-205ENST00000538291 KRTAP10-10P60014 251 aa8.84□□□□□ -0.99
SCARB1-205ENST00000538291 LRBAP50851 2863 aa8.83□□□□□ -1
SCARB1-205ENST00000538291 XIRP2A4UGR9 3374 aa8.83□□□□□ -1
SCARB1-205ENST00000538291 CELSR2Q9HCU4 2923 aa8.77□□□□□ -1.01
SCARB1-205ENST00000538291 PRO2289Q9P1D8 64 aa8.77□□□□□ -1.01
SCARB1-205ENST00000538291 FREM2Q5SZK8 3169 aa8.77□□□□□ -1.01
SCARB1-205ENST00000538291 TENM3Q9P273 2699 aa8.75□□□□□ -1.01
SCARB1-205ENST00000538291 FRYLO94915 3013 aa8.74□□□□□ -1.01
SCARB1-205ENST00000538291 KRTAP13-3Q3SY46 172 aa8.72□□□□□ -1.01
SCARB1-205ENST00000538291 LAMA1P25391 3075 aa8.71□□□□□ -1.01
SCARB1-205ENST00000538291 UNC80Q8N2C7 3258 aa8.69□□□□□ -1.02
SCARB1-205ENST00000538291 DCHS2Q6V1P9 2916 aa8.67□□□□□ -1.02
SCARB1-205ENST00000538291 H0YAA0 97 aa8.66□□□□□ -1.02
SCARB1-205ENST00000538291 TENM1Q9UKZ4 2725 aa8.65□□□□□ -1.03
SCARB1-205ENST00000538291 ZZEF1O43149 2961 aa8.61□□□□□ -1.03
SCARB1-205ENST00000538291 P0C880 135 aa8.6□□□□□ -1.03
SCARB1-205ENST00000538291 ADGRG4Q8IZF6 3080 aa8.59□□□□□ -1.03
SCARB1-205ENST00000538291 CELSR3Q9NYQ7 3312 aa8.57□□□□□ -1.04
SCARB1-205ENST00000538291 BOD1L1Q8NFC6 3051 aa8.55□□□□□ -1.04
SCARB1-205ENST00000538291 TENM2Q9NT68 2774 aa8.54□□□□□ -1.04
SCARB1-205ENST00000538291 DNAH14Q0VDD8 3507 aa8.52□□□□□ -1.05
SCARB1-205ENST00000538291 EYSQ5T1H1 3165 aa8.51□□□□□ -1.05
SCARB1-205ENST00000538291 NF1P21359 2839 aa8.51□□□□□ -1.05
SCARB1-205ENST00000538291 NBEAQ8NFP9 2946 aa8.51□□□□□ -1.05
SCARB1-205ENST00000538291 ZANQ9Y493 2812 aa8.47□□□□□ -1.05
SCARB1-205ENST00000538291 CDH23Q9H251 3354 aa8.46□□□□□ -1.05
SCARB1-205ENST00000538291 CFAP47Q6ZTR5 3102 aa8.36□□□□□ -1.07
SCARB1-205ENST00000538291 TNRC18O15417 2968 aaPredicted RBP8.34□□□□□ -1.08
SCARB1-205ENST00000538291 VCANP13611 3396 aa8.33□□□□□ -1.08
SCARB1-205ENST00000538291 COL6A3P12111 3177 aa8.31□□□□□ -1.08
SCARB1-205ENST00000538291 TGP01266 2768 aa8.31□□□□□ -1.08
SCARB1-205ENST00000538291 SZT2Q5T011 3432 aa8.28□□□□□ -1.08
SCARB1-205ENST00000538291 PKD1L1Q8TDX9 2849 aa8.26□□□□□ -1.09
SCARB1-205ENST00000538291 SPEGQ15772 3267 aa8.25□□□□□ -1.09
SCARB1-205ENST00000538291 FBN2P35556 2912 aa8.23□□□□□ -1.09
SCARB1-205ENST00000538291 HRNRQ86YZ3 2850 aaPredicted RBP8.2□□□□□ -1.1
SCARB1-205ENST00000538291 KRTAP12-2P59991 146 aa8.18□□□□□ -1.1
SCARB1-205ENST00000538291 MXRA5Q9NR99 2828 aa8.18□□□□□ -1.1
SCARB1-205ENST00000538291 PDZD2O15018 2839 aa8.18□□□□□ -1.1
SCARB1-205ENST00000538291 KRTAP13-4Q3LI77 160 aa8.16□□□□□ -1.1
SCARB1-205ENST00000538291 CELSR1Q9NYQ6 3014 aa8.15□□□□□ -1.1
SCARB1-205ENST00000538291 USP34Q70CQ2 3546 aa8.13□□□□□ -1.11
SCARB1-205ENST00000538291 MYO15AQ9UKN7 3530 aa8.11□□□□□ -1.11
SCARB1-205ENST00000538291 VWFP04275 2813 aa8.11□□□□□ -1.11
SCARB1-205ENST00000538291 KRTAP12-1P59990 96 aa8.05□□□□□ -1.12
SCARB1-205ENST00000538291 DMXL1Q9Y485 3027 aa8.03□□□□□ -1.12
SCARB1-205ENST00000538291 SPTBN5Q9NRC6 3674 aaKnown RBP8□□□□□ -1.13
SCARB1-205ENST00000538291 KRTAP3-1Q9BYR8 98 aa7.95□□□□□ -1.14
SCARB1-205ENST00000538291 KRTAP15-1Q3LI76 137 aa7.92□□□□□ -1.14
SCARB1-205ENST00000538291 SRRM2Q9UQ35 2752 aaKnown RBP7.85□□□□□ -1.15
SCARB1-205ENST00000538291 WDFY3Q8IZQ1 3526 aa7.77□□□□□ -1.17
SCARB1-205ENST00000538291 KRTAP10-6P60371 365 aaPredicted RBP7.74□□□□□ -1.17
SCARB1-205ENST00000538291 MT1HL1P0DM35 61 aa7.72□□□□□ -1.17
SCARB1-205ENST00000538291 FBN3Q75N90 2809 aa7.72□□□□□ -1.17
SCARB1-205ENST00000538291 LOC400499M0QZD8 3231 aa7.71□□□□□ -1.17
SCARB1-205ENST00000538291 DCHS1Q96JQ0 3298 aa7.67□□□□□ -1.18
SCARB1-205ENST00000538291 FBN1P35555 2871 aaKnown RBP7.63□□□□□ -1.19
SCARB1-205ENST00000538291 KRTAP10-12P60413 245 aa7.57□□□□□ -1.2
SCARB1-205ENST00000538291 OTOGQ6ZRI0 2925 aa7.55□□□□□ -1.2
SCARB1-205ENST00000538291 ASPMQ8IZT6 3477 aa7.52□□□□□ -1.21
SCARB1-205ENST00000538291 ANK3Q12955 4377 aaKnown RBP7.52□□□□□ -1.21
SCARB1-205ENST00000538291 ZFHX4Q86UP3 3567 aa7.52□□□□□ -1.21
SCARB1-205ENST00000538291 DMDP11532 3685 aa7.51□□□□□ -1.21
SCARB1-205ENST00000538291 CRCT1Q9UGL9 99 aa7.5□□□□□ -1.21
SCARB1-205ENST00000538291 MEGF8Q7Z7M0 2845 aa7.5□□□□□ -1.21
SCARB1-205ENST00000538291 RELNP78509 3460 aa7.46□□□□□ -1.22
SCARB1-205ENST00000538291 KRTAP4-5Q9BYR2 181 aa7.45□□□□□ -1.22
SCARB1-205ENST00000538291 COL7A1Q02388 2944 aa7.44□□□□□ -1.22
SCARB1-205ENST00000538291 KRTAP3-2Q9BYR7 98 aa7.43□□□□□ -1.22
SCARB1-205ENST00000538291 KRTAP3-3Q9BYR6 98 aa7.42□□□□□ -1.22
SCARB1-205ENST00000538291 NBPF19A0A087WUL8 3843 aa7.41□□□□□ -1.22
SCARB1-205ENST00000538291 KRTAP10-4P60372 401 aaPredicted RBP7.39□□□□□ -1.23
SCARB1-205ENST00000538291 MUC3AQ02505 3323 aa7.38□□□□□ -1.23
SCARB1-205ENST00000538291 SMG1Q96Q15 3661 aaKnown RBP7.36□□□□□ -1.23
SCARB1-205ENST00000538291 LAMA5O15230 3695 aa7.35□□□□□ -1.23
SCARB1-205ENST00000538291 ALMS1Q8TCU4 4167 aa7.35□□□□□ -1.23
SCARB1-205ENST00000538291 ZFHX3Q15911 3703 aa7.34□□□□□ -1.23
SCARB1-205ENST00000538291 INE1O15225 51 aa7.34□□□□□ -1.23
SCARB1-205ENST00000538291 KRTAP12-3P60328 96 aa7.33□□□□□ -1.24
SCARB1-205ENST00000538291 CSMD1Q96PZ7 3565 aa7.31□□□□□ -1.24
SCARB1-205ENST00000538291 KRTAP23-1A1A580 65 aa7.19□□□□□ -1.26
SCARB1-205ENST00000538291 LCE3AQ5TA76 89 aa7.17□□□□□ -1.26
SCARB1-205ENST00000538291 SVEP1Q4LDE5 3571 aa7.16□□□□□ -1.26
SCARB1-205ENST00000538291 HUWE1Q7Z6Z7 4374 aaKnown RBP7.13□□□□□ -1.27
SCARB1-205ENST00000538291 SPENQ96T58 3664 aaKnown RBP7.13□□□□□ -1.27
SCARB1-205ENST00000538291 KRTAP8-1Q8IUC2 63 aa7.08□□□□□ -1.28
SCARB1-205ENST00000538291 LORP23490 312 aaPredicted RBP7.04□□□□□ -1.28
SCARB1-205ENST00000538291 TRRAPQ9Y4A5 3859 aa6.96□□□□□ -1.3
SCARB1-205ENST00000538291 CUBNO60494 3623 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms