RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 SPRR1BP22528 89 aa6.52□□□□□ -1.37
CLIP1-209ENST00000537178 SPINK7P58062 85 aa6.52□□□□□ -1.37
CLIP1-209ENST00000537178 KRTAP1-1Q07627 177 aa6.52□□□□□ -1.37
CLIP1-209ENST00000537178 H3BS24 57 aa6.52□□□□□ -1.37
CLIP1-209ENST00000537178 APCP25054 2843 aa6.51□□□□□ -1.37
CLIP1-209ENST00000537178 HELZ2Q9BYK8 2649 aaKnown RBP6.51□□□□□ -1.37
CLIP1-209ENST00000537178 DNAH1Q9P2D7 4330 aa6.51□□□□□ -1.37
CLIP1-209ENST00000537178 ANK2Q01484 3957 aa6.51□□□□□ -1.37
CLIP1-209ENST00000537178 Q5VV11 94 aa6.51□□□□□ -1.37
CLIP1-209ENST00000537178 LINC00472Q9H8W2 130 aa6.5□□□□□ -1.37
CLIP1-209ENST00000537178 TRRAPQ9Y4A5 3859 aa6.49□□□□□ -1.37
CLIP1-209ENST00000537178 RPL37P61927 97 aaKnown RBP6.49□□□□□ -1.37
CLIP1-209ENST00000537178 SEC61BP60468 96 aaKnown RBP6.48□□□□□ -1.37
CLIP1-209ENST00000537178 VWFP04275 2813 aa6.47□□□□□ -1.37
CLIP1-209ENST00000537178 PDZD2O15018 2839 aa6.46□□□□□ -1.38
CLIP1-209ENST00000537178 NOTCH1P46531 2555 aa6.45□□□□□ -1.38
CLIP1-209ENST00000537178 ROMO1P60602 79 aa6.44□□□□□ -1.38
CLIP1-209ENST00000537178 TEP1Q99973 2627 aaKnown RBP6.44□□□□□ -1.38
CLIP1-209ENST00000537178 Q8NDZ9 215 aa6.43□□□□□ -1.38
CLIP1-209ENST00000537178 CMYA5Q8N3K9 4069 aa6.4□□□□□ -1.39
CLIP1-209ENST00000537178 LYSTQ99698 3801 aa6.39□□□□□ -1.39
CLIP1-209ENST00000537178 M0QZ58 72 aa6.39□□□□□ -1.39
CLIP1-209ENST00000537178 H1FX-AS1Q4G0G2 97 aa6.38□□□□□ -1.39
CLIP1-209ENST00000537178 TENM4Q6N022 2769 aa6.36□□□□□ -1.39
CLIP1-209ENST00000537178 BAHCC1Q9P281 2608 aa6.36□□□□□ -1.39
CLIP1-209ENST00000537178 DNAH3Q8TD57 4116 aa6.36□□□□□ -1.39
CLIP1-209ENST00000537178 ASB16-AS1Q495Z4 193 aa6.35□□□□□ -1.39
CLIP1-209ENST00000537178 KRTAP26-1Q6PEX3 210 aa6.35□□□□□ -1.39
CLIP1-209ENST00000537178 PLAC4Q8WY50 150 aa6.35□□□□□ -1.39
CLIP1-209ENST00000537178 NBEAL2Q6ZNJ1 2754 aa6.35□□□□□ -1.39
CLIP1-209ENST00000537178 UNC79Q9P2D8 2635 aa6.34□□□□□ -1.39
CLIP1-209ENST00000537178 Q5VSD8 79 aa6.31□□□□□ -1.4
CLIP1-209ENST00000537178 OTOGQ6ZRI0 2925 aa6.31□□□□□ -1.4
CLIP1-209ENST00000537178 HIVEP1P15822 2718 aa6.3□□□□□ -1.4
CLIP1-209ENST00000537178 PKD1L1Q8TDX9 2849 aa6.3□□□□□ -1.4
CLIP1-209ENST00000537178 CSMD3Q7Z407 3707 aa6.3□□□□□ -1.4
CLIP1-209ENST00000537178 Q6ZR54 194 aa6.3□□□□□ -1.4
CLIP1-209ENST00000537178 GCN1Q92616 2671 aaKnown RBP6.3□□□□□ -1.4
CLIP1-209ENST00000537178 KRTAP1-5Q9BYS1 174 aa6.29□□□□□ -1.4
CLIP1-209ENST00000537178 TENM1Q9UKZ4 2725 aa6.29□□□□□ -1.4
CLIP1-209ENST00000537178 COL6A5A8TX70 2615 aa6.28□□□□□ -1.4
CLIP1-209ENST00000537178 A8MU10 97 aa6.28□□□□□ -1.4
CLIP1-209ENST00000537178 KRTAP10-1P60331 282 aa6.26□□□□□ -1.41
CLIP1-209ENST00000537178 ADM2Q7Z4H4 148 aa6.26□□□□□ -1.41
CLIP1-209ENST00000537178 PANO1I0J062 215 aa6.25□□□□□ -1.41
CLIP1-209ENST00000537178 SPATA8Q6RVD6 105 aa6.24□□□□□ -1.41
CLIP1-209ENST00000537178 KRTAP29-1A8MX34 341 aaPredicted RBP6.24□□□□□ -1.41
CLIP1-209ENST00000537178 LCE6AA0A183 80 aa6.24□□□□□ -1.41
CLIP1-209ENST00000537178 KRTAP16-1A8MUX0 517 aa6.22□□□□□ -1.41
CLIP1-209ENST00000537178 KRTAP10-2P60368 255 aa6.21□□□□□ -1.42
CLIP1-209ENST00000537178 KRTAP4-16G5E9R7 235 aaPredicted RBP6.2□□□□□ -1.42
CLIP1-209ENST00000537178 DNAH9Q9NYC9 4486 aa6.19□□□□□ -1.42
CLIP1-209ENST00000537178 A6NN06 94 aa6.19□□□□□ -1.42
CLIP1-209ENST00000537178 DNAH10Q8IVF4 4471 aa6.19□□□□□ -1.42
CLIP1-209ENST00000537178 ITPR2Q14571 2701 aa6.17□□□□□ -1.42
CLIP1-209ENST00000537178 A0A087X002 238 aa6.13□□□□□ -1.43
CLIP1-209ENST00000537178 KRTAP25-1Q3LHN0 102 aa6.12□□□□□ -1.43
CLIP1-209ENST00000537178 DNAH7Q8WXX0 4024 aa6.12□□□□□ -1.43
CLIP1-209ENST00000537178 FBN1P35555 2871 aaKnown RBP6.1□□□□□ -1.43
CLIP1-209ENST00000537178 RPS29P62273 56 aaKnown RBP6.1□□□□□ -1.43
CLIP1-209ENST00000537178 C20orf166-AS1Q96NR2 134 aa6.09□□□□□ -1.43
CLIP1-209ENST00000537178 DYNC2H1Q8NCM8 4307 aaKnown RBP6.09□□□□□ -1.43
CLIP1-209ENST00000537178 NOTCH2NLQ7Z3S9 236 aa6.09□□□□□ -1.43
CLIP1-209ENST00000537178 A8MUU9 505 aa6.09□□□□□ -1.44
CLIP1-209ENST00000537178 TENM3Q9P273 2699 aa6.08□□□□□ -1.44
CLIP1-209ENST00000537178 KRTAP21-3Q3LHN1 58 aa6.08□□□□□ -1.44
CLIP1-209ENST00000537178 TENM2Q9NT68 2774 aa6.07□□□□□ -1.44
CLIP1-209ENST00000537178 NSD1Q96L73 2696 aaPredicted RBP6.05□□□□□ -1.44
CLIP1-209ENST00000537178 KRTAP7-1Q8IUC3 87 aa6.03□□□□□ -1.44
CLIP1-209ENST00000537178 SRRM2Q9UQ35 2752 aaKnown RBP6.03□□□□□ -1.44
CLIP1-209ENST00000537178 HUWE1Q7Z6Z7 4374 aaKnown RBP6.02□□□□□ -1.44
CLIP1-209ENST00000537178 NDUFAF8A1L188 74 aa6.01□□□□□ -1.45
CLIP1-209ENST00000537178 TNP1P09430 55 aa5.99□□□□□ -1.45
CLIP1-209ENST00000537178 COL7A1Q02388 2944 aa5.99□□□□□ -1.45
CLIP1-209ENST00000537178 KMT2BQ9UMN6 2715 aaPredicted RBP5.97□□□□□ -1.45
CLIP1-209ENST00000537178 HECTD4Q9Y4D8 3996 aa5.96□□□□□ -1.45
CLIP1-209ENST00000537178 KRTAP11-1Q8IUC1 163 aa5.95□□□□□ -1.46
CLIP1-209ENST00000537178 FRAS1Q86XX4 4008 aa5.95□□□□□ -1.46
CLIP1-209ENST00000537178 Q6ZRN7 208 aaPredicted RBP5.93□□□□□ -1.46
CLIP1-209ENST00000537178 KRTAP13-2Q52LG2 175 aa5.92□□□□□ -1.46
CLIP1-209ENST00000537178 DNAH8Q96JB1 4490 aa5.91□□□□□ -1.46
CLIP1-209ENST00000537178 ALMS1Q8TCU4 4167 aa5.91□□□□□ -1.46
CLIP1-209ENST00000537178 PRKDCP78527 4128 aaKnown RBP5.89□□□□□ -1.47
CLIP1-209ENST00000537178 C10orf95Q9H7T3 257 aa5.89□□□□□ -1.47
CLIP1-209ENST00000537178 KRTAP13-1Q8IUC0 172 aa5.89□□□□□ -1.47
CLIP1-209ENST00000537178 FBN3Q75N90 2809 aa5.89□□□□□ -1.47
CLIP1-209ENST00000537178 VPS13DQ5THJ4 4388 aa5.89□□□□□ -1.47
CLIP1-209ENST00000537178 PLECQ15149 4684 aaKnown RBP5.86□□□□□ -1.47
CLIP1-209ENST00000537178 PP632Q6XCG6 107 aa5.86□□□□□ -1.47
CLIP1-209ENST00000537178 DNAH2Q9P225 4427 aa5.82□□□□□ -1.48
CLIP1-209ENST00000537178 DNAH17Q9UFH2 4485 aa5.82□□□□□ -1.48
CLIP1-209ENST00000537178 DNAH6Q9C0G6 4158 aa5.79□□□□□ -1.48
CLIP1-209ENST00000537178 STARD9Q9P2P6 4700 aa5.76□□□□□ -1.49
CLIP1-209ENST00000537178 KRTAP10-8P60410 259 aa5.74□□□□□ -1.49
CLIP1-209ENST00000537178 KMT2AQ03164 3969 aa5.74□□□□□ -1.49
CLIP1-209ENST00000537178 P0C880 135 aa5.68□□□□□ -1.5
CLIP1-209ENST00000537178 DNAH11Q96DT5 4516 aa5.64□□□□□ -1.51
CLIP1-209ENST00000537178 XP32Q5T750 250 aa5.64□□□□□ -1.51
CLIP1-209ENST00000537178 PKD1P98161 4303 aa5.63□□□□□ -1.51
CLIP1-209ENST00000537178 DNAH5Q8TE73 4624 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms