RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 LAMA2P24043 3122 aaKnown RBP9.46□□□□□ -0.9
SFSWAP-203ENST00000535236 HIVEP1P15822 2718 aa9.46□□□□□ -0.9
SFSWAP-203ENST00000535236 TACC2O95359 2948 aa9.44□□□□□ -0.9
SFSWAP-203ENST00000535236 H0YAA0 97 aa9.4□□□□□ -0.9
SFSWAP-203ENST00000535236 REV3LO60673 3130 aa9.39□□□□□ -0.91
SFSWAP-203ENST00000535236 KRTAP13-3Q3SY46 172 aa9.38□□□□□ -0.91
SFSWAP-203ENST00000535236 CRYBG3Q68DQ2 2970 aa9.36□□□□□ -0.91
SFSWAP-203ENST00000535236 P0C880 135 aa9.35□□□□□ -0.91
SFSWAP-203ENST00000535236 FLNCQ14315 2725 aa9.34□□□□□ -0.91
SFSWAP-203ENST00000535236 KALRNO60229 2985 aa9.33□□□□□ -0.92
SFSWAP-203ENST00000535236 VPS13AQ96RL7 3174 aa9.31□□□□□ -0.92
SFSWAP-203ENST00000535236 UNC80Q8N2C7 3258 aa9.31□□□□□ -0.92
SFSWAP-203ENST00000535236 XIRP2A4UGR9 3374 aa9.29□□□□□ -0.92
SFSWAP-203ENST00000535236 DMXL2Q8TDJ6 3036 aa9.29□□□□□ -0.92
SFSWAP-203ENST00000535236 ATMQ13315 3056 aa9.27□□□□□ -0.92
SFSWAP-203ENST00000535236 LRBAP50851 2863 aa9.27□□□□□ -0.93
SFSWAP-203ENST00000535236 NIPBLQ6KC79 2804 aaeCLIP9.26□□□□□ -0.931e-6■□□□□ 10
SFSWAP-203ENST00000535236 FREM2Q5SZK8 3169 aa9.25□□□□□ -0.93
SFSWAP-203ENST00000535236 ASH1LQ9NR48 2969 aaKnown RBP9.25□□□□□ -0.93
SFSWAP-203ENST00000535236 COL12A1Q99715 3063 aa9.23□□□□□ -0.93
SFSWAP-203ENST00000535236 LAMA1P25391 3075 aa9.16□□□□□ -0.94
SFSWAP-203ENST00000535236 CELSR2Q9HCU4 2923 aa9.12□□□□□ -0.95
SFSWAP-203ENST00000535236 CELSR3Q9NYQ7 3312 aa9.11□□□□□ -0.95
SFSWAP-203ENST00000535236 CDH23Q9H251 3354 aa9.09□□□□□ -0.95
SFSWAP-203ENST00000535236 FRYLO94915 3013 aa9.08□□□□□ -0.96
SFSWAP-203ENST00000535236 DCHS2Q6V1P9 2916 aa9.03□□□□□ -0.96
SFSWAP-203ENST00000535236 TENM1Q9UKZ4 2725 aa9.01□□□□□ -0.97
SFSWAP-203ENST00000535236 TENM3Q9P273 2699 aa9.01□□□□□ -0.97
SFSWAP-203ENST00000535236 DNAH14Q0VDD8 3507 aa8.99□□□□□ -0.97
SFSWAP-203ENST00000535236 ADGRG4Q8IZF6 3080 aa8.98□□□□□ -0.97
SFSWAP-203ENST00000535236 TENM2Q9NT68 2774 aa8.96□□□□□ -0.98
SFSWAP-203ENST00000535236 ZZEF1O43149 2961 aa8.95□□□□□ -0.98
SFSWAP-203ENST00000535236 EYSQ5T1H1 3165 aa8.94□□□□□ -0.98
SFSWAP-203ENST00000535236 VCANP13611 3396 aa8.9□□□□□ -0.98
SFSWAP-203ENST00000535236 KRTAP12-2P59991 146 aa8.9□□□□□ -0.98
SFSWAP-203ENST00000535236 BOD1L1Q8NFC6 3051 aa8.9□□□□□ -0.98
SFSWAP-203ENST00000535236 NBEAQ8NFP9 2946 aa8.86□□□□□ -0.99
SFSWAP-203ENST00000535236 COL6A3P12111 3177 aa8.86□□□□□ -0.99
SFSWAP-203ENST00000535236 CFAP47Q6ZTR5 3102 aa8.86□□□□□ -0.99
SFSWAP-203ENST00000535236 SZT2Q5T011 3432 aa8.85□□□□□ -0.99
SFSWAP-203ENST00000535236 KRTAP13-4Q3LI77 160 aa8.84□□□□□ -0.99
SFSWAP-203ENST00000535236 NF1P21359 2839 aa8.81□□□□□ -1
SFSWAP-203ENST00000535236 TGP01266 2768 aa8.79□□□□□ -1
SFSWAP-203ENST00000535236 ZANQ9Y493 2812 aa8.78□□□□□ -1
SFSWAP-203ENST00000535236 SPEGQ15772 3267 aa8.74□□□□□ -1.01
SFSWAP-203ENST00000535236 KRTAP12-1P59990 96 aa8.72□□□□□ -1.01
SFSWAP-203ENST00000535236 HRNRQ86YZ3 2850 aaPredicted RBP8.63□□□□□ -1.03
SFSWAP-203ENST00000535236 KRTAP15-1Q3LI76 137 aa8.62□□□□□ -1.03
SFSWAP-203ENST00000535236 TNRC18O15417 2968 aaPredicted RBP8.59□□□□□ -1.03
SFSWAP-203ENST00000535236 FBN2P35556 2912 aa8.59□□□□□ -1.03
SFSWAP-203ENST00000535236 KRTAP3-1Q9BYR8 98 aa8.58□□□□□ -1.04
SFSWAP-203ENST00000535236 CELSR1Q9NYQ6 3014 aa8.57□□□□□ -1.04
SFSWAP-203ENST00000535236 PKD1L1Q8TDX9 2849 aa8.55□□□□□ -1.04
SFSWAP-203ENST00000535236 USP34Q70CQ2 3546 aa8.54□□□□□ -1.04
SFSWAP-203ENST00000535236 PDZD2O15018 2839 aa8.5□□□□□ -1.05
SFSWAP-203ENST00000535236 MYO15AQ9UKN7 3530 aa8.49□□□□□ -1.05
SFSWAP-203ENST00000535236 MXRA5Q9NR99 2828 aa8.47□□□□□ -1.05
SFSWAP-203ENST00000535236 VWFP04275 2813 aa8.44□□□□□ -1.06
SFSWAP-203ENST00000535236 SPTBN5Q9NRC6 3674 aaKnown RBP8.42□□□□□ -1.06
SFSWAP-203ENST00000535236 DMXL1Q9Y485 3027 aa8.41□□□□□ -1.06
SFSWAP-203ENST00000535236 KRTAP10-6P60371 365 aaPredicted RBP8.35□□□□□ -1.07
SFSWAP-203ENST00000535236 MT1HL1P0DM35 61 aa8.25□□□□□ -1.09
SFSWAP-203ENST00000535236 CRCT1Q9UGL9 99 aa8.21□□□□□ -1.09
SFSWAP-203ENST00000535236 LOC400499M0QZD8 3231 aa8.2□□□□□ -1.1
SFSWAP-203ENST00000535236 KRTAP10-12P60413 245 aa8.2□□□□□ -1.1
SFSWAP-203ENST00000535236 WDFY3Q8IZQ1 3526 aa8.15□□□□□ -1.11
SFSWAP-203ENST00000535236 SRRM2Q9UQ35 2752 aaKnown RBP8.04□□□□□ -1.12
SFSWAP-203ENST00000535236 INE1O15225 51 aa8.02□□□□□ -1.13
SFSWAP-203ENST00000535236 KRTAP3-2Q9BYR7 98 aa8.01□□□□□ -1.13
SFSWAP-203ENST00000535236 KRTAP3-3Q9BYR6 98 aa8□□□□□ -1.13
SFSWAP-203ENST00000535236 KRTAP4-5Q9BYR2 181 aa7.99□□□□□ -1.13
SFSWAP-203ENST00000535236 FBN3Q75N90 2809 aa7.98□□□□□ -1.13
SFSWAP-203ENST00000535236 DCHS1Q96JQ0 3298 aa7.98□□□□□ -1.13
SFSWAP-203ENST00000535236 ASPMQ8IZT6 3477 aa7.95□□□□□ -1.14
SFSWAP-203ENST00000535236 NBPF19A0A087WUL8 3843 aa7.94□□□□□ -1.14
SFSWAP-203ENST00000535236 KRTAP12-3P60328 96 aa7.93□□□□□ -1.14
SFSWAP-203ENST00000535236 ZFHX4Q86UP3 3567 aa7.92□□□□□ -1.14
SFSWAP-203ENST00000535236 FBN1P35555 2871 aaKnown RBP7.9□□□□□ -1.15
SFSWAP-203ENST00000535236 RELNP78509 3460 aa7.89□□□□□ -1.15
SFSWAP-203ENST00000535236 MEGF8Q7Z7M0 2845 aa7.88□□□□□ -1.15
SFSWAP-203ENST00000535236 KRTAP10-4P60372 401 aaPredicted RBP7.88□□□□□ -1.15
SFSWAP-203ENST00000535236 OTOGQ6ZRI0 2925 aa7.86□□□□□ -1.15
SFSWAP-203ENST00000535236 ANK3Q12955 4377 aaKnown RBP7.82□□□□□ -1.16
SFSWAP-203ENST00000535236 LAMA5O15230 3695 aa7.82□□□□□ -1.16
SFSWAP-203ENST00000535236 LCE3AQ5TA76 89 aa7.8□□□□□ -1.16
SFSWAP-203ENST00000535236 DMDP11532 3685 aa7.79□□□□□ -1.16
SFSWAP-203ENST00000535236 MUC3AQ02505 3323 aa7.76□□□□□ -1.17
SFSWAP-203ENST00000535236 COL7A1Q02388 2944 aa7.74□□□□□ -1.17
SFSWAP-203ENST00000535236 KRTAP23-1A1A580 65 aa7.74□□□□□ -1.17
SFSWAP-203ENST00000535236 ZFHX3Q15911 3703 aa7.7□□□□□ -1.18
SFSWAP-203ENST00000535236 CSMD1Q96PZ7 3565 aa7.68□□□□□ -1.18
SFSWAP-203ENST00000535236 KRTAP8-1Q8IUC2 63 aa7.66□□□□□ -1.18
SFSWAP-203ENST00000535236 SMG1Q96Q15 3661 aaKnown RBP7.66□□□□□ -1.18
SFSWAP-203ENST00000535236 LORP23490 312 aaPredicted RBP7.62□□□□□ -1.19
SFSWAP-203ENST00000535236 KRTAP10-5P60370 271 aa7.56□□□□□ -1.2
SFSWAP-203ENST00000535236 ALMS1Q8TCU4 4167 aa7.55□□□□□ -1.2
SFSWAP-203ENST00000535236 SVEP1Q4LDE5 3571 aa7.53□□□□□ -1.2
SFSWAP-203ENST00000535236 HUWE1Q7Z6Z7 4374 aaKnown RBP7.51□□□□□ -1.21
SFSWAP-203ENST00000535236 CUBNO60494 3623 aa7.48□□□□□ -1.21
SFSWAP-203ENST00000535236 TRRAPQ9Y4A5 3859 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 150.1 ms