RNA–Protein interactions for RNA: ENST00000532649.5

CTNND1-232, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,026 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-232ENST00000532649 ASB16-AS1Q495Z4 193 aa5.13□□□□□ -1.59
CTNND1-232ENST00000532649 CFAP47Q6ZTR5 3102 aa5.12□□□□□ -1.59
CTNND1-232ENST00000532649 SPEGQ15772 3267 aa5.11□□□□□ -1.59
CTNND1-232ENST00000532649 STAB2Q8WWQ8 2551 aa5.11□□□□□ -1.59
CTNND1-232ENST00000532649 A0A087X002 238 aa5.11□□□□□ -1.59
CTNND1-232ENST00000532649 CRYBG3Q68DQ2 2970 aa5.11□□□□□ -1.59
CTNND1-232ENST00000532649 SPATA8Q6RVD6 105 aa5.1□□□□□ -1.59
CTNND1-232ENST00000532649 KRTAP11-1Q8IUC1 163 aa5.08□□□□□ -1.6
CTNND1-232ENST00000532649 CYSTM1Q9H1C7 97 aa5.06□□□□□ -1.6
CTNND1-232ENST00000532649 TENM4Q6N022 2769 aa5.05□□□□□ -1.6
CTNND1-232ENST00000532649 A8MUU9 505 aa5.04□□□□□ -1.6
CTNND1-232ENST00000532649 KRTAP25-1Q3LHN0 102 aa5.03□□□□□ -1.6
CTNND1-232ENST00000532649 LOC400499M0QZD8 3231 aa5.03□□□□□ -1.6
CTNND1-232ENST00000532649 KRTAP7-1Q8IUC3 87 aa5.03□□□□□ -1.6
CTNND1-232ENST00000532649 NDUFAF8A1L188 74 aa5.02□□□□□ -1.61
CTNND1-232ENST00000532649 ZANQ9Y493 2812 aa5.02□□□□□ -1.61
CTNND1-232ENST00000532649 ASH1LQ9NR48 2969 aaKnown RBP5.01□□□□□ -1.61
CTNND1-232ENST00000532649 CELSR2Q9HCU4 2923 aa5.01□□□□□ -1.61
CTNND1-232ENST00000532649 NIPBLQ6KC79 2804 aaeCLIP5□□□□□ -1.611e-6■□□□□ 9
CTNND1-232ENST00000532649 HRNRQ86YZ3 2850 aaPredicted RBP4.99□□□□□ -1.61
CTNND1-232ENST00000532649 TNP1P09430 55 aa4.98□□□□□ -1.61
CTNND1-232ENST00000532649 DMBT1Q9UGM3 2413 aaPredicted RBP4.97□□□□□ -1.61
CTNND1-232ENST00000532649 MYO15AQ9UKN7 3530 aa4.97□□□□□ -1.61
CTNND1-232ENST00000532649 FLG2Q5D862 2391 aaPredicted RBP4.97□□□□□ -1.61
CTNND1-232ENST00000532649 RPS29P62273 56 aaKnown RBP4.96□□□□□ -1.62
CTNND1-232ENST00000532649 KRTAP13-2Q52LG2 175 aa4.96□□□□□ -1.62
CTNND1-232ENST00000532649 NOTCH2NLQ7Z3S9 236 aa4.96□□□□□ -1.62
CTNND1-232ENST00000532649 DCHS2Q6V1P9 2916 aa4.96□□□□□ -1.62
CTNND1-232ENST00000532649 KRTAP29-1A8MX34 341 aaPredicted RBP4.95□□□□□ -1.62
CTNND1-232ENST00000532649 KRTAP13-1Q8IUC0 172 aa4.95□□□□□ -1.62
CTNND1-232ENST00000532649 C10orf95Q9H7T3 257 aa4.94□□□□□ -1.62
CTNND1-232ENST00000532649 A6NN06 94 aa4.92□□□□□ -1.62
CTNND1-232ENST00000532649 A8MU10 97 aa4.88□□□□□ -1.63
CTNND1-232ENST00000532649 FBN2P35556 2912 aa4.88□□□□□ -1.63
CTNND1-232ENST00000532649 NF1P21359 2839 aa4.87□□□□□ -1.63
CTNND1-232ENST00000532649 RELNP78509 3460 aa4.85□□□□□ -1.63
CTNND1-232ENST00000532649 P0C880 135 aa4.85□□□□□ -1.63
CTNND1-232ENST00000532649 KRTAP10-8P60410 259 aa4.83□□□□□ -1.64
CTNND1-232ENST00000532649 ASPMQ8IZT6 3477 aa4.78□□□□□ -1.64
CTNND1-232ENST00000532649 WDFY3Q8IZQ1 3526 aa4.78□□□□□ -1.64
CTNND1-232ENST00000532649 DCHS1Q96JQ0 3298 aa4.78□□□□□ -1.64
CTNND1-232ENST00000532649 LAMA5O15230 3695 aa4.77□□□□□ -1.65
CTNND1-232ENST00000532649 MXRA5Q9NR99 2828 aa4.77□□□□□ -1.65
CTNND1-232ENST00000532649 PP632Q6XCG6 107 aa4.77□□□□□ -1.65
CTNND1-232ENST00000532649 CELSR1Q9NYQ6 3014 aa4.76□□□□□ -1.65
CTNND1-232ENST00000532649 KRTAP1-4P0C5Y4 121 aa4.76□□□□□ -1.65
CTNND1-232ENST00000532649 PRO2289Q9P1D8 64 aa4.76□□□□□ -1.65
CTNND1-232ENST00000532649 A0A1B0GVY2 172 aa4.75□□□□□ -1.65
CTNND1-232ENST00000532649 TENM1Q9UKZ4 2725 aa4.74□□□□□ -1.65
CTNND1-232ENST00000532649 TENM2Q9NT68 2774 aa4.74□□□□□ -1.65
CTNND1-232ENST00000532649 NBPF19A0A087WUL8 3843 aa4.74□□□□□ -1.65
CTNND1-232ENST00000532649 DMDP11532 3685 aa4.71□□□□□ -1.65
CTNND1-232ENST00000532649 PDZD2O15018 2839 aa4.71□□□□□ -1.66
CTNND1-232ENST00000532649 MUC3AQ02505 3323 aa4.69□□□□□ -1.66
CTNND1-232ENST00000532649 KRTAP10-10P60014 251 aa4.69□□□□□ -1.66
CTNND1-232ENST00000532649 XP32Q5T750 250 aa4.69□□□□□ -1.66
CTNND1-232ENST00000532649 ZFHX4Q86UP3 3567 aa4.69□□□□□ -1.66
CTNND1-232ENST00000532649 TENM3Q9P273 2699 aa4.69□□□□□ -1.66
CTNND1-232ENST00000532649 PKD1L1Q8TDX9 2849 aa4.63□□□□□ -1.67
CTNND1-232ENST00000532649 TPRXLQ17RH7 258 aa4.63□□□□□ -1.67
CTNND1-232ENST00000532649 OTOGQ6ZRI0 2925 aa4.61□□□□□ -1.67
CTNND1-232ENST00000532649 ZFHX3Q15911 3703 aa4.58□□□□□ -1.68
CTNND1-232ENST00000532649 KRTAP13-3Q3SY46 172 aa4.56□□□□□ -1.68
CTNND1-232ENST00000532649 VWFP04275 2813 aa4.54□□□□□ -1.68
CTNND1-232ENST00000532649 SMG1Q96Q15 3661 aaKnown RBP4.53□□□□□ -1.68
CTNND1-232ENST00000532649 CSMD1Q96PZ7 3565 aa4.53□□□□□ -1.68
CTNND1-232ENST00000532649 FBN1P35555 2871 aaKnown RBP4.52□□□□□ -1.69
CTNND1-232ENST00000532649 TGP01266 2768 aa4.52□□□□□ -1.69
CTNND1-232ENST00000532649 ANK3Q12955 4377 aaKnown RBP4.52□□□□□ -1.69
CTNND1-232ENST00000532649 CSMD2Q7Z408 3487 aa4.46□□□□□ -1.7
CTNND1-232ENST00000532649 SPENQ96T58 3664 aaKnown RBP4.45□□□□□ -1.7
CTNND1-232ENST00000532649 H0YAA0 97 aa4.43□□□□□ -1.7
CTNND1-232ENST00000532649 SVEP1Q4LDE5 3571 aa4.42□□□□□ -1.7
CTNND1-232ENST00000532649 BSNQ9UPA5 3926 aa4.4□□□□□ -1.71
CTNND1-232ENST00000532649 TRRAPQ9Y4A5 3859 aa4.37□□□□□ -1.71
CTNND1-232ENST00000532649 KRTAP12-2P59991 146 aa4.33□□□□□ -1.72
CTNND1-232ENST00000532649 CUBNO60494 3623 aa4.29□□□□□ -1.72
CTNND1-232ENST00000532649 KRTAP15-1Q3LI76 137 aa4.28□□□□□ -1.72
CTNND1-232ENST00000532649 FBN3Q75N90 2809 aa4.27□□□□□ -1.73
CTNND1-232ENST00000532649 SRRM2Q9UQ35 2752 aaKnown RBP4.27□□□□□ -1.73
CTNND1-232ENST00000532649 KRTAP13-4Q3LI77 160 aa4.25□□□□□ -1.73
CTNND1-232ENST00000532649 HUWE1Q7Z6Z7 4374 aaKnown RBP4.23□□□□□ -1.73
CTNND1-232ENST00000532649 MT1HL1P0DM35 61 aa4.21□□□□□ -1.74
CTNND1-232ENST00000532649 MEGF8Q7Z7M0 2845 aa4.2□□□□□ -1.74
CTNND1-232ENST00000532649 COL7A1Q02388 2944 aa4.19□□□□□ -1.74
CTNND1-232ENST00000532649 KRTAP3-1Q9BYR8 98 aa4.17□□□□□ -1.74
CTNND1-232ENST00000532649 KRTAP4-5Q9BYR2 181 aa4.17□□□□□ -1.74
CTNND1-232ENST00000532649 VPS13CQ709C8 3753 aa4.16□□□□□ -1.74
CTNND1-232ENST00000532649 CRCT1Q9UGL9 99 aa4.15□□□□□ -1.75
CTNND1-232ENST00000532649 INE1O15225 51 aa4.14□□□□□ -1.75
CTNND1-232ENST00000532649 KRTAP10-4P60372 401 aaPredicted RBP4.12□□□□□ -1.75
CTNND1-232ENST00000532649 ALMS1Q8TCU4 4167 aa4.11□□□□□ -1.75
CTNND1-232ENST00000532649 AKAP9Q99996 3911 aa4.09□□□□□ -1.76
CTNND1-232ENST00000532649 ZNF469Q96JG9 3925 aaPredicted RBP4.08□□□□□ -1.76
CTNND1-232ENST00000532649 KRTAP12-1P59990 96 aa4.07□□□□□ -1.76
CTNND1-232ENST00000532649 DNAH9Q9NYC9 4486 aa4.04□□□□□ -1.76
CTNND1-232ENST00000532649 KRTAP10-6P60371 365 aaPredicted RBP4□□□□□ -1.77
CTNND1-232ENST00000532649 KRTAP10-12P60413 245 aa3.97□□□□□ -1.77
CTNND1-232ENST00000532649 CSMD3Q7Z407 3707 aa3.94□□□□□ -1.78
CTNND1-232ENST00000532649 KRTAP3-3Q9BYR6 98 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms