RNA–Protein interactions for RNA: ENST00000532331.5

PTPRK-221, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,757 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-221ENST00000532331 ZZEF1O43149 2961 aa6.43□□□□□ -1.38
PTPRK-221ENST00000532331 KRTAP7-1Q8IUC3 87 aa6.43□□□□□ -1.38
PTPRK-221ENST00000532331 PRAC1Q96KF2 57 aa6.41□□□□□ -1.38
PTPRK-221ENST00000532331 NOTCH2NLQ7Z3S9 236 aa6.41□□□□□ -1.38
PTPRK-221ENST00000532331 ADM2Q7Z4H4 148 aa6.4□□□□□ -1.38
PTPRK-221ENST00000532331 PLAC4Q8WY50 150 aa6.4□□□□□ -1.38
PTPRK-221ENST00000532331 KRTAP13-1Q8IUC0 172 aa6.4□□□□□ -1.39
PTPRK-221ENST00000532331 USP34Q70CQ2 3546 aa6.39□□□□□ -1.39
PTPRK-221ENST00000532331 NIPBLQ6KC79 2804 aaeCLIP6.39□□□□□ -1.39
PTPRK-221ENST00000532331 ROMO1P60602 79 aa6.39□□□□□ -1.39
PTPRK-221ENST00000532331 FREM2Q5SZK8 3169 aa6.39□□□□□ -1.39
PTPRK-221ENST00000532331 DNAH14Q0VDD8 3507 aa6.38□□□□□ -1.39
PTPRK-221ENST00000532331 SPATA8Q6RVD6 105 aa6.33□□□□□ -1.4
PTPRK-221ENST00000532331 C20orf166-AS1Q96NR2 134 aa6.31□□□□□ -1.4
PTPRK-221ENST00000532331 CELSR2Q9HCU4 2923 aa6.29□□□□□ -1.4
PTPRK-221ENST00000532331 ZANQ9Y493 2812 aa6.28□□□□□ -1.4
PTPRK-221ENST00000532331 CFAP47Q6ZTR5 3102 aa6.28□□□□□ -1.4
PTPRK-221ENST00000532331 DCHS2Q6V1P9 2916 aa6.27□□□□□ -1.41
PTPRK-221ENST00000532331 HRNRQ86YZ3 2850 aaPredicted RBP6.23□□□□□ -1.41
PTPRK-221ENST00000532331 ASH1LQ9NR48 2969 aaKnown RBP6.23□□□□□ -1.41
PTPRK-221ENST00000532331 A8MUU9 505 aa6.22□□□□□ -1.41
PTPRK-221ENST00000532331 SPEGQ15772 3267 aa6.21□□□□□ -1.41
PTPRK-221ENST00000532331 NF1P21359 2839 aa6.21□□□□□ -1.41
PTPRK-221ENST00000532331 A0A0A0MQY5 61 aa6.21□□□□□ -1.42
PTPRK-221ENST00000532331 KRTAP1-4P0C5Y4 121 aa6.2□□□□□ -1.42
PTPRK-221ENST00000532331 A0A1B0GVY2 172 aa6.17□□□□□ -1.42
PTPRK-221ENST00000532331 TENM2Q9NT68 2774 aa6.17□□□□□ -1.42
PTPRK-221ENST00000532331 XP32Q5T750 250 aa6.16□□□□□ -1.42
PTPRK-221ENST00000532331 TPRXLQ17RH7 258 aa6.15□□□□□ -1.42
PTPRK-221ENST00000532331 A8MU10 97 aa6.14□□□□□ -1.43
PTPRK-221ENST00000532331 MXRA5Q9NR99 2828 aa6.14□□□□□ -1.43
PTPRK-221ENST00000532331 LOC400499M0QZD8 3231 aa6.12□□□□□ -1.43
PTPRK-221ENST00000532331 TENM1Q9UKZ4 2725 aa6.11□□□□□ -1.43
PTPRK-221ENST00000532331 FBN2P35556 2912 aa6.07□□□□□ -1.44
PTPRK-221ENST00000532331 TENM3Q9P273 2699 aa6.07□□□□□ -1.44
PTPRK-221ENST00000532331 PDZD2O15018 2839 aa6.06□□□□□ -1.44
PTPRK-221ENST00000532331 H3BS24 57 aa6.05□□□□□ -1.44
PTPRK-221ENST00000532331 A6NN06 94 aa6.04□□□□□ -1.44
PTPRK-221ENST00000532331 KRTAP25-1Q3LHN0 102 aa6.04□□□□□ -1.44
PTPRK-221ENST00000532331 MYO15AQ9UKN7 3530 aa6.02□□□□□ -1.45
PTPRK-221ENST00000532331 KRTAP13-3Q3SY46 172 aa5.99□□□□□ -1.45
PTPRK-221ENST00000532331 KRTAP10-8P60410 259 aa5.99□□□□□ -1.45
PTPRK-221ENST00000532331 TNP1P09430 55 aa5.99□□□□□ -1.45
PTPRK-221ENST00000532331 CELSR1Q9NYQ6 3014 aa5.98□□□□□ -1.45
PTPRK-221ENST00000532331 KRTAP10-10P60014 251 aa5.96□□□□□ -1.46
PTPRK-221ENST00000532331 DCHS1Q96JQ0 3298 aa5.95□□□□□ -1.46
PTPRK-221ENST00000532331 RELNP78509 3460 aa5.94□□□□□ -1.46
PTPRK-221ENST00000532331 PKD1L1Q8TDX9 2849 aa5.94□□□□□ -1.46
PTPRK-221ENST00000532331 OTOGQ6ZRI0 2925 aa5.94□□□□□ -1.46
PTPRK-221ENST00000532331 NBPF19A0A087WUL8 3843 aa5.92□□□□□ -1.46
PTPRK-221ENST00000532331 KRTAP16-1A8MUX0 517 aa5.86□□□□□ -1.47
PTPRK-221ENST00000532331 WDFY3Q8IZQ1 3526 aa5.81□□□□□ -1.48
PTPRK-221ENST00000532331 PP632Q6XCG6 107 aa5.8□□□□□ -1.48
PTPRK-221ENST00000532331 PRO2289Q9P1D8 64 aa5.8□□□□□ -1.48
PTPRK-221ENST00000532331 VWFP04275 2813 aa5.79□□□□□ -1.48
PTPRK-221ENST00000532331 LAMA5O15230 3695 aa5.78□□□□□ -1.48
PTPRK-221ENST00000532331 C10orf95Q9H7T3 257 aa5.78□□□□□ -1.48
PTPRK-221ENST00000532331 ASPMQ8IZT6 3477 aa5.78□□□□□ -1.48
PTPRK-221ENST00000532331 ZFHX3Q15911 3703 aa5.77□□□□□ -1.49
PTPRK-221ENST00000532331 FBN1P35555 2871 aaKnown RBP5.76□□□□□ -1.49
PTPRK-221ENST00000532331 NDUFAF8A1L188 74 aa5.76□□□□□ -1.49
PTPRK-221ENST00000532331 TGP01266 2768 aa5.75□□□□□ -1.49
PTPRK-221ENST00000532331 H0YAA0 97 aa5.75□□□□□ -1.49
PTPRK-221ENST00000532331 ANK3Q12955 4377 aaKnown RBP5.73□□□□□ -1.49
PTPRK-221ENST00000532331 MUC3AQ02505 3323 aa5.68□□□□□ -1.5
PTPRK-221ENST00000532331 P0C880 135 aa5.67□□□□□ -1.5
PTPRK-221ENST00000532331 DMDP11532 3685 aa5.66□□□□□ -1.5
PTPRK-221ENST00000532331 ZFHX4Q86UP3 3567 aa5.57□□□□□ -1.52
PTPRK-221ENST00000532331 SMG1Q96Q15 3661 aaKnown RBP5.55□□□□□ -1.52
PTPRK-221ENST00000532331 MT1HL1P0DM35 61 aa5.55□□□□□ -1.52
PTPRK-221ENST00000532331 KRTAP4-5Q9BYR2 181 aa5.53□□□□□ -1.52
PTPRK-221ENST00000532331 FBN3Q75N90 2809 aa5.53□□□□□ -1.52
PTPRK-221ENST00000532331 CSMD1Q96PZ7 3565 aa5.51□□□□□ -1.53
PTPRK-221ENST00000532331 CSMD2Q7Z408 3487 aa5.5□□□□□ -1.53
PTPRK-221ENST00000532331 SRRM2Q9UQ35 2752 aaKnown RBP5.47□□□□□ -1.53
PTPRK-221ENST00000532331 KRTAP12-2P59991 146 aa5.43□□□□□ -1.54
PTPRK-221ENST00000532331 TRRAPQ9Y4A5 3859 aa5.41□□□□□ -1.54
PTPRK-221ENST00000532331 KRTAP10-4P60372 401 aaPredicted RBP5.38□□□□□ -1.55
PTPRK-221ENST00000532331 KRTAP3-1Q9BYR8 98 aa5.37□□□□□ -1.55
PTPRK-221ENST00000532331 KRTAP13-4Q3LI77 160 aa5.37□□□□□ -1.55
PTPRK-221ENST00000532331 ALMS1Q8TCU4 4167 aa5.37□□□□□ -1.55
PTPRK-221ENST00000532331 SPENQ96T58 3664 aaKnown RBP5.36□□□□□ -1.55
PTPRK-221ENST00000532331 HUWE1Q7Z6Z7 4374 aaKnown RBP5.36□□□□□ -1.55
PTPRK-221ENST00000532331 KRTAP12-1P59990 96 aa5.35□□□□□ -1.55
PTPRK-221ENST00000532331 MEGF8Q7Z7M0 2845 aa5.33□□□□□ -1.56
PTPRK-221ENST00000532331 BSNQ9UPA5 3926 aa5.33□□□□□ -1.56
PTPRK-221ENST00000532331 COL7A1Q02388 2944 aa5.32□□□□□ -1.56
PTPRK-221ENST00000532331 SVEP1Q4LDE5 3571 aa5.24□□□□□ -1.57
PTPRK-221ENST00000532331 KRTAP10-6P60371 365 aaPredicted RBP5.2□□□□□ -1.58
PTPRK-221ENST00000532331 DNAH9Q9NYC9 4486 aa5.14□□□□□ -1.59
PTPRK-221ENST00000532331 KRTAP15-1Q3LI76 137 aa5.14□□□□□ -1.59
PTPRK-221ENST00000532331 CUBNO60494 3623 aa5.14□□□□□ -1.59
PTPRK-221ENST00000532331 AKAP9Q99996 3911 aa5.12□□□□□ -1.59
PTPRK-221ENST00000532331 KRTAP3-3Q9BYR6 98 aa5.04□□□□□ -1.6
PTPRK-221ENST00000532331 KRTAP3-2Q9BYR7 98 aa5.02□□□□□ -1.61
PTPRK-221ENST00000532331 DNHD1Q96M86 4753 aa5.02□□□□□ -1.61
PTPRK-221ENST00000532331 DNAH1Q9P2D7 4330 aa5.01□□□□□ -1.61
PTPRK-221ENST00000532331 DNAH5Q8TE73 4624 aa5□□□□□ -1.61
PTPRK-221ENST00000532331 VPS13CQ709C8 3753 aa5□□□□□ -1.61
PTPRK-221ENST00000532331 KRTAP10-12P60413 245 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms