RNA–Protein interactions for RNA: ENST00000532331.5

PTPRK-221, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,757 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-221ENST00000532331 DCAF8L2P0C7V8 631 aa20.58■□□□□ 0.88
PTPRK-221ENST00000532331 NISCHQ9Y2I1 1504 aa19.95■□□□□ 0.78
PTPRK-221ENST00000532331 SUPT5HO00267 1087 aaKnown RBP18.89■□□□□ 0.61
PTPRK-221ENST00000532331 SHROOM4Q9ULL8 1493 aa18.82■□□□□ 0.6
PTPRK-221ENST00000532331 FAM9AQ8IZU1 332 aaPredicted RBP18.21■□□□□ 0.51
PTPRK-221ENST00000532331 EHMT2Q96KQ7 1210 aa18.21■□□□□ 0.51
PTPRK-221ENST00000532331 APLP2Q06481 763 aa17.99■□□□□ 0.47
PTPRK-221ENST00000532331 ABCC9O60706 1549 aa17.7■□□□□ 0.42
PTPRK-221ENST00000532331 RANGAP1P46060 587 aaPredicted RBP17.68■□□□□ 0.42
PTPRK-221ENST00000532331 ATP1B4Q9UN42 357 aaPredicted RBP17.62■□□□□ 0.41
PTPRK-221ENST00000532331 TRIM41Q8WV44 630 aa17.6■□□□□ 0.41
PTPRK-221ENST00000532331 TTBK1Q5TCY1 1321 aaPredicted RBP17.48■□□□□ 0.39
PTPRK-221ENST00000532331 PABPN1Q86U42 306 aaKnown RBP eCLIP17.46■□□□□ 0.39
PTPRK-221ENST00000532331 UBTFP17480 764 aaKnown RBP17.44■□□□□ 0.38
PTPRK-221ENST00000532331 PELP1Q8IZL8 1130 aaKnown RBP17.35■□□□□ 0.37
PTPRK-221ENST00000532331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.2■□□□□ 0.34
PTPRK-221ENST00000532331 HNRNPUL2Q1KMD3 747 aaKnown RBP17.2■□□□□ 0.34
PTPRK-221ENST00000532331 MYT1LQ9UL68 1186 aa17.2■□□□□ 0.34
PTPRK-221ENST00000532331 PCGF6Q9BYE7 350 aa17.11■□□□□ 0.33
PTPRK-221ENST00000532331 ZEB1P37275 1124 aaPredicted RBP16.93■□□□□ 0.3
PTPRK-221ENST00000532331 CCER1Q8TC90 406 aaPredicted RBP16.91■□□□□ 0.3
PTPRK-221ENST00000532331 FBLN2P98095 1184 aa16.88■□□□□ 0.29
PTPRK-221ENST00000532331 CENPBP07199 599 aaPredicted RBP16.78■□□□□ 0.28
PTPRK-221ENST00000532331 ITGAEP38570 1179 aa16.75■□□□□ 0.27
PTPRK-221ENST00000532331 CHIC1Q5VXU3 224 aa16.74■□□□□ 0.27
PTPRK-221ENST00000532331 PPARGC1BQ86YN6 1023 aaKnown RBP16.74■□□□□ 0.27
PTPRK-221ENST00000532331 SCRIBQ14160 1630 aa16.69■□□□□ 0.26
PTPRK-221ENST00000532331 CCDC180Q9P1Z9 1646 aa16.61■□□□□ 0.25
PTPRK-221ENST00000532331 ERICH6Q7L0X2 663 aa16.57■□□□□ 0.24
PTPRK-221ENST00000532331 RB1CC1Q8TDY2 1594 aa16.54■□□□□ 0.24
PTPRK-221ENST00000532331 NEFLP07196 543 aa16.49■□□□□ 0.23
PTPRK-221ENST00000532331 LOC105371045A0A1W2PR82 267 aa16.49■□□□□ 0.23
PTPRK-221ENST00000532331 TRIM26Q12899 539 aaPredicted RBP16.48■□□□□ 0.23
PTPRK-221ENST00000532331 POLR3GLQ9BT43 218 aa16.47■□□□□ 0.23
PTPRK-221ENST00000532331 FAM50AQ14320 339 aaKnown RBP16.45■□□□□ 0.22
PTPRK-221ENST00000532331 ZCCHC6Q5VYS8 1495 aaKnown RBP16.43■□□□□ 0.22
PTPRK-221ENST00000532331 NPM1P06748 294 aaKnown RBP eCLIP16.41■□□□□ 0.22
PTPRK-221ENST00000532331 YTHDC1Q96MU7 727 aaKnown RBP16.41■□□□□ 0.22
PTPRK-221ENST00000532331 SLC4A1APQ9BWU0 796 aaKnown RBP16.39■□□□□ 0.21
PTPRK-221ENST00000532331 TRIM52Q96A61 297 aa16.35■□□□□ 0.21
PTPRK-221ENST00000532331 ARID3CA6NKF2 412 aa16.35■□□□□ 0.21
PTPRK-221ENST00000532331 P3H3Q8IVL6 736 aa16.34■□□□□ 0.21
PTPRK-221ENST00000532331 ESF1Q9H501 851 aaKnown RBP16.28■□□□□ 0.2
PTPRK-221ENST00000532331 NACADO15069 1562 aa16.28■□□□□ 0.2
PTPRK-221ENST00000532331 CDK11AQ9UQ88 783 aaPredicted RBP16.27■□□□□ 0.2
PTPRK-221ENST00000532331 BCANQ96GW7 911 aa16.25■□□□□ 0.19
PTPRK-221ENST00000532331 CHMP7Q8WUX9 453 aaPredicted RBP16.22■□□□□ 0.19
PTPRK-221ENST00000532331 CSRNP3Q8WYN3 585 aa16.22■□□□□ 0.19
PTPRK-221ENST00000532331 ZNF777Q9ULD5 760 aaPredicted RBP16.21■□□□□ 0.19
PTPRK-221ENST00000532331 CNGB1Q14028 1251 aaPredicted RBP16.19■□□□□ 0.18
PTPRK-221ENST00000532331 HRCP23327 699 aa16.15■□□□□ 0.18
PTPRK-221ENST00000532331 ERCC6Q03468 1493 aa16.13■□□□□ 0.17
PTPRK-221ENST00000532331 PLPPR3Q6T4P5 718 aa16.13■□□□□ 0.17
PTPRK-221ENST00000532331 ZNF326Q5BKZ1 582 aaKnown RBP16.07■□□□□ 0.16
PTPRK-221ENST00000532331 BAZ1BQ9UIG0 1483 aaKnown RBP16.05■□□□□ 0.16
PTPRK-221ENST00000532331 STAG3Q9UJ98 1225 aa16.04■□□□□ 0.16
PTPRK-221ENST00000532331 NEUROD1Q13562 356 aa16.04■□□□□ 0.16
PTPRK-221ENST00000532331 DAXXQ9UER7 740 aaPredicted RBP16■□□□□ 0.15
PTPRK-221ENST00000532331 CHGAP10645 457 aaKnown RBP15.94■□□□□ 0.14
PTPRK-221ENST00000532331 KCNH8Q96L42 1107 aa15.86■□□□□ 0.13
PTPRK-221ENST00000532331 DIEXFQ68CQ4 756 aaKnown RBP15.83■□□□□ 0.13
PTPRK-221ENST00000532331 TSPY4P0CV99 314 aa15.82■□□□□ 0.12
PTPRK-221ENST00000532331 TSPY10P0CW01 314 aa15.82■□□□□ 0.12
PTPRK-221ENST00000532331 SLC24A1O60721 1099 aa15.82■□□□□ 0.12
PTPRK-221ENST00000532331 MYT1Q01538 1121 aa15.82■□□□□ 0.12
PTPRK-221ENST00000532331 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.81■□□□□ 0.125e-7■■□□□ 13.3
PTPRK-221ENST00000532331 RSF1Q96T23 1441 aaPredicted RBP15.8■□□□□ 0.12
PTPRK-221ENST00000532331 TRHP20396 242 aaPredicted RBP15.8■□□□□ 0.12
PTPRK-221ENST00000532331 BAZ1AQ9NRL2 1556 aaPredicted RBP15.78■□□□□ 0.12
PTPRK-221ENST00000532331 PLEKHD1A6NEE1 506 aa15.78■□□□□ 0.12
PTPRK-221ENST00000532331 NEFMP07197 916 aa15.77■□□□□ 0.12
PTPRK-221ENST00000532331 ARID4BQ4LE39 1312 aaPredicted RBP15.77■□□□□ 0.12
PTPRK-221ENST00000532331 MTUS2Q5JR59 1369 aa15.76■□□□□ 0.11
PTPRK-221ENST00000532331 DCAF1Q9Y4B6 1507 aa15.74■□□□□ 0.11
PTPRK-221ENST00000532331 CHIC2Q9UKJ5 165 aa15.72■□□□□ 0.11
PTPRK-221ENST00000532331 CLSPNQ9HAW4 1339 aa15.72■□□□□ 0.11
PTPRK-221ENST00000532331 WRNQ14191 1432 aaPredicted RBP eCLIP15.71■□□□□ 0.11
PTPRK-221ENST00000532331 KIF27Q86VH2 1401 aa15.69■□□□□ 0.1
PTPRK-221ENST00000532331 PDS5BQ9NTI5 1447 aa15.68■□□□□ 0.1
PTPRK-221ENST00000532331 ANP32CO43423 234 aa15.66■□□□□ 0.1
PTPRK-221ENST00000532331 PPP1R15AO75807 674 aaPredicted RBP15.63■□□□□ 0.09
PTPRK-221ENST00000532331 CECR2Q9BXF3 1484 aa15.63■□□□□ 0.09
PTPRK-221ENST00000532331 ZNF316A6NFI3 1004 aaPredicted RBP15.62■□□□□ 0.09
PTPRK-221ENST00000532331 SMARCA2P51531 1590 aa15.61■□□□□ 0.09
PTPRK-221ENST00000532331 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
PTPRK-221ENST00000532331 C14orf37Q86TY3 774 aa15.59■□□□□ 0.09
PTPRK-221ENST00000532331 EEA1Q15075 1411 aa15.59■□□□□ 0.09
PTPRK-221ENST00000532331 CLIP1P30622 1438 aa15.58■□□□□ 0.08
PTPRK-221ENST00000532331 ZBTB47Q9UFB7 747 aaPredicted RBP15.58■□□□□ 0.08
PTPRK-221ENST00000532331 TONSLQ96HA7 1378 aa15.56■□□□□ 0.08
PTPRK-221ENST00000532331 CFDP1Q9UEE9 299 aaPredicted RBP15.54■□□□□ 0.08
PTPRK-221ENST00000532331 RTL5Q5HYW3 569 aaPredicted RBP15.53■□□□□ 0.08
PTPRK-221ENST00000532331 GOLGA3Q08378 1498 aa15.52■□□□□ 0.07
PTPRK-221ENST00000532331 EIF4G1Q04637 1599 aaKnown RBP15.51■□□□□ 0.07
PTPRK-221ENST00000532331 SENP3Q9H4L4 574 aaPredicted RBP15.5■□□□□ 0.07
PTPRK-221ENST00000532331 CUX2O14529 1486 aa15.49■□□□□ 0.07
PTPRK-221ENST00000532331 CANXP27824 592 aaKnown RBP15.49■□□□□ 0.07
PTPRK-221ENST00000532331 KDM2AQ9Y2K7 1162 aa15.48■□□□□ 0.07
PTPRK-221ENST00000532331 RRP7BPQ9NSQ0 103 aa15.47■□□□□ 0.07
PTPRK-221ENST00000532331 CARMIL1Q5VZK9 1371 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms