RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 VPS13BQ7Z7G8 4022 aa0.76□□□□□ -2.29
SKP1-209ENST00000522552 MMP24-AS1A0A0U1RRL7 71 aa0.75□□□□□ -2.29
SKP1-209ENST00000522552 LRP1Q07954 4544 aaKnown RBP0.75□□□□□ -2.29
SKP1-209ENST00000522552 MACF1Q9UPN3 7388 aaKnown RBP0.75□□□□□ -2.29
SKP1-209ENST00000522552 SNRPGP62308 76 aaKnown RBP0.75□□□□□ -2.29
SKP1-209ENST00000522552 NOP10Q9NPE3 64 aaKnown RBP0.75□□□□□ -2.29
SKP1-209ENST00000522552 DEFB131AP59861 70 aa0.74□□□□□ -2.29
SKP1-209ENST00000522552 NCOR2Q9Y618 2525 aa0.73□□□□□ -2.29
SKP1-209ENST00000522552 IGSF10Q6WRI0 2623 aa0.73□□□□□ -2.29
SKP1-209ENST00000522552 FLNCQ14315 2725 aa0.73□□□□□ -2.29
SKP1-209ENST00000522552 MYCBP2O75592 4640 aa0.72□□□□□ -2.29
SKP1-209ENST00000522552 DCHS2Q6V1P9 2916 aa0.72□□□□□ -2.29
SKP1-209ENST00000522552 GCN1Q92616 2671 aaKnown RBP0.72□□□□□ -2.29
SKP1-209ENST00000522552 NSD1Q96L73 2696 aaPredicted RBP0.72□□□□□ -2.29
SKP1-209ENST00000522552 DNAH11Q96DT5 4516 aa0.71□□□□□ -2.3
SKP1-209ENST00000522552 SPENQ96T58 3664 aaKnown RBP0.71□□□□□ -2.3
SKP1-209ENST00000522552 SACSQ9NZJ4 4579 aa0.7□□□□□ -2.3
SKP1-209ENST00000522552 DUOX1Q9NRD9 1551 aa0.7□□□□□ -2.3
SKP1-209ENST00000522552 KRTAP21-1Q3LI58 79 aa0.69□□□□□ -2.3
SKP1-209ENST00000522552 FLNBO75369 2602 aaKnown RBP0.69□□□□□ -2.3
SKP1-209ENST00000522552 DMXL1Q9Y485 3027 aa0.69□□□□□ -2.3
SKP1-209ENST00000522552 ACACAQ13085 2346 aa0.68□□□□□ -2.3
SKP1-209ENST00000522552 CUBNO60494 3623 aa0.68□□□□□ -2.3
SKP1-209ENST00000522552 LPAP08519 4548 aa0.68□□□□□ -2.3
SKP1-209ENST00000522552 LRRK2Q5S007 2527 aa0.68□□□□□ -2.3
SKP1-209ENST00000522552 SETD2Q9BYW2 2564 aaPredicted RBP0.68□□□□□ -2.3
SKP1-209ENST00000522552 CACNA1AO00555 2505 aa0.67□□□□□ -2.3
SKP1-209ENST00000522552 RIF1Q5UIP0 2472 aaKnown RBP0.67□□□□□ -2.3
SKP1-209ENST00000522552 COL7A1Q02388 2944 aa0.67□□□□□ -2.3
SKP1-209ENST00000522552 MROH2BQ7Z745 1585 aa0.67□□□□□ -2.3
SKP1-209ENST00000522552 HRNRQ86YZ3 2850 aaPredicted RBP0.67□□□□□ -2.3
SKP1-209ENST00000522552 DMBT1Q9UGM3 2413 aaPredicted RBP0.66□□□□□ -2.3
SKP1-209ENST00000522552 PKD1P98161 4303 aa0.66□□□□□ -2.3
SKP1-209ENST00000522552 TACC2O95359 2948 aa0.66□□□□□ -2.3
SKP1-209ENST00000522552 HECTD4Q9Y4D8 3996 aa0.66□□□□□ -2.3
SKP1-209ENST00000522552 SYNE2Q8WXH0 6885 aaKnown RBP0.66□□□□□ -2.3
SKP1-209ENST00000522552 M0QY20 66 aa0.65□□□□□ -2.3
SKP1-209ENST00000522552 DNAH3Q8TD57 4116 aa0.65□□□□□ -2.3
SKP1-209ENST00000522552 MTORP42345 2549 aa0.65□□□□□ -2.31
SKP1-209ENST00000522552 COL12A1Q99715 3063 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 COL6A5A8TX70 2615 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 GCC2Q8IWJ2 1684 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 KALRNO60229 2985 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 CHD7Q9P2D1 2997 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 SPTBN4Q9H254 2564 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 EPG5Q9HCE0 2579 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 HSPG2P98160 4391 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 PKHD1L1Q86WI1 4243 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 NBEAL2Q6ZNJ1 2754 aa0.63□□□□□ -2.31
SKP1-209ENST00000522552 DNAH9Q9NYC9 4486 aa0.62□□□□□ -2.31
SKP1-209ENST00000522552 SPG11Q96JI7 2443 aa0.62□□□□□ -2.31
SKP1-209ENST00000522552 C9orf92A6NGG3 77 aa0.62□□□□□ -2.31
SKP1-209ENST00000522552 SPRR2DP22532 72 aa0.62□□□□□ -2.31
SKP1-209ENST00000522552 UTP20O75691 2785 aaKnown RBP0.62□□□□□ -2.31
SKP1-209ENST00000522552 FLGP20930 4061 aaPredicted RBP0.62□□□□□ -2.31
SKP1-209ENST00000522552 A8MTW9 85 aa0.62□□□□□ -2.31
SKP1-209ENST00000522552 H3BNG1 76 aa0.62□□□□□ -2.31
SKP1-209ENST00000522552 SPTBN5Q9NRC6 3674 aaKnown RBP0.62□□□□□ -2.31
SKP1-209ENST00000522552 FAT4Q6V0I7 4981 aa0.61□□□□□ -2.31
SKP1-209ENST00000522552 ANKHD1Q8IWZ3 2542 aaKnown RBP0.61□□□□□ -2.31
SKP1-209ENST00000522552 FAM186AA6NE01 2351 aa0.61□□□□□ -2.31
SKP1-209ENST00000522552 AKAP9Q99996 3911 aa0.61□□□□□ -2.31
SKP1-209ENST00000522552 STAB1Q9NY15 2570 aa0.61□□□□□ -2.31
SKP1-209ENST00000522552 RANBP2P49792 3224 aaKnown RBP0.6□□□□□ -2.31
SKP1-209ENST00000522552 ANK3Q12955 4377 aaKnown RBP0.6□□□□□ -2.31
SKP1-209ENST00000522552 POLR2KP53803 58 aaKnown RBP0.59□□□□□ -2.31
SKP1-209ENST00000522552 RPL39P62891 51 aaKnown RBP0.59□□□□□ -2.31
SKP1-209ENST00000522552 CLPSL2Q6UWE3 100 aa0.59□□□□□ -2.31
SKP1-209ENST00000522552 FRYQ5TBA9 3013 aa0.59□□□□□ -2.31
SKP1-209ENST00000522552 DNAH2Q9P225 4427 aa0.59□□□□□ -2.31
SKP1-209ENST00000522552 FLNAP21333 2647 aaKnown RBP0.59□□□□□ -2.31
SKP1-209ENST00000522552 ANKRD11Q6UB99 2663 aaPredicted RBP0.59□□□□□ -2.31
SKP1-209ENST00000522552 TENM2Q9NT68 2774 aa0.58□□□□□ -2.32
SKP1-209ENST00000522552 NBEAQ8NFP9 2946 aa0.58□□□□□ -2.32
SKP1-209ENST00000522552 DYNC2H1Q8NCM8 4307 aaKnown RBP0.58□□□□□ -2.32
SKP1-209ENST00000522552 VPS13DQ5THJ4 4388 aa0.58□□□□□ -2.32
SKP1-209ENST00000522552 SONP18583 2426 aaKnown RBP0.58□□□□□ -2.32
SKP1-209ENST00000522552 HTTP42858 3142 aa0.57□□□□□ -2.32
SKP1-209ENST00000522552 M0QZ58 72 aa0.57□□□□□ -2.32
SKP1-209ENST00000522552 MAST4O15021 2626 aa0.57□□□□□ -2.32
SKP1-209ENST00000522552 FASNP49327 2511 aaKnown RBP0.57□□□□□ -2.32
SKP1-209ENST00000522552 TENM3Q9P273 2699 aa0.56□□□□□ -2.32
SKP1-209ENST00000522552 COL6A3P12111 3177 aa0.56□□□□□ -2.32
SKP1-209ENST00000522552 HMCN2Q8NDA2 5059 aa0.56□□□□□ -2.32
SKP1-209ENST00000522552 LRP1BQ9NZR2 4599 aa0.55□□□□□ -2.32
SKP1-209ENST00000522552 APOBP04114 4563 aaKnown RBP0.55□□□□□ -2.32
SKP1-209ENST00000522552 MAP1AP78559 2803 aaPredicted RBP0.55□□□□□ -2.32
SKP1-209ENST00000522552 CCDC168Q8NDH2 2452 aa0.55□□□□□ -2.32
SKP1-209ENST00000522552 SPRR2BP35325 72 aa0.54□□□□□ -2.32
SKP1-209ENST00000522552 TNP1P09430 55 aa0.53□□□□□ -2.32
SKP1-209ENST00000522552 RPL39LQ96EH5 51 aaKnown RBP0.53□□□□□ -2.32
SKP1-209ENST00000522552 KMT2DO14686 5537 aa0.53□□□□□ -2.32
SKP1-209ENST00000522552 ZFHX4Q86UP3 3567 aa0.53□□□□□ -2.33
SKP1-209ENST00000522552 DNAH6Q9C0G6 4158 aa0.53□□□□□ -2.33
SKP1-209ENST00000522552 CRYBG3Q68DQ2 2970 aa0.53□□□□□ -2.33
SKP1-209ENST00000522552 KRTAP5-10Q6L8G5 202 aa0.53□□□□□ -2.33
SKP1-209ENST00000522552 MUC16Q8WXI7 14507 aa0.53□□□□□ -2.33
SKP1-209ENST00000522552 HIVEP1P15822 2718 aa0.52□□□□□ -2.33
SKP1-209ENST00000522552 DNAH8Q96JB1 4490 aa0.52□□□□□ -2.33
SKP1-209ENST00000522552 LAMA5O15230 3695 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms