RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 KRTAP1-4P0C5Y4 121 aa4.31□□□□□ -1.72
NUP54-204ENST00000506098 Q8N377 158 aa4.31□□□□□ -1.72
NUP54-204ENST00000506098 TRBV7-4A0A0J9YYF1 115 aa4.3□□□□□ -1.72
NUP54-204ENST00000506098 hDV103S1A0JD37 113 aa4.3□□□□□ -1.72
NUP54-204ENST00000506098 MP68P56378 58 aa4.3□□□□□ -1.72
NUP54-204ENST00000506098 FAM229BQ4G0N7 80 aa4.3□□□□□ -1.72
NUP54-204ENST00000506098 MPLKIPQ8TAP9 179 aa4.3□□□□□ -1.72
NUP54-204ENST00000506098 KRTAP4-5Q9BYR2 181 aa4.3□□□□□ -1.72
NUP54-204ENST00000506098 ORMDL1Q9P0S3 153 aa4.3□□□□□ -1.72
NUP54-204ENST00000506098 FLG2Q5D862 2391 aaPredicted RBP4.29□□□□□ -1.72
NUP54-204ENST00000506098 JMJD7-PLA2G4BH0Y9G9 81 aa4.29□□□□□ -1.72
NUP54-204ENST00000506098 SMIM29Q86T20 159 aa4.29□□□□□ -1.72
NUP54-204ENST00000506098 LINC00846Q9NV44 126 aa4.29□□□□□ -1.72
NUP54-204ENST00000506098 A0A087WVE0 104 aa4.28□□□□□ -1.72
NUP54-204ENST00000506098 IGKV3D-7A0A0C4DH55 119 aa4.28□□□□□ -1.72
NUP54-204ENST00000506098 DEFB105AQ8NG35 78 aa4.28□□□□□ -1.72
NUP54-204ENST00000506098 LIMD2Q9BT23 127 aa4.28□□□□□ -1.72
NUP54-204ENST00000506098 UBL5Q9BZL1 73 aa4.28□□□□□ -1.72
NUP54-204ENST00000506098 LINC01554Q52M75 96 aa4.27□□□□□ -1.73
NUP54-204ENST00000506098 TNXBP22105 4242 aa4.26□□□□□ -1.73
NUP54-204ENST00000506098 HERC2O95714 4834 aa4.26□□□□□ -1.73
NUP54-204ENST00000506098 FAT3Q8TDW7 4589 aa4.26□□□□□ -1.73
NUP54-204ENST00000506098 IGLV8-61A0A075B6I0 122 aa4.26□□□□□ -1.73
NUP54-204ENST00000506098 A0A1B0GW54 56 aa4.26□□□□□ -1.73
NUP54-204ENST00000506098 TMEM254Q8TBM7 123 aa4.26□□□□□ -1.73
NUP54-204ENST00000506098 ANAPC11Q9NYG5 84 aa4.26□□□□□ -1.73
NUP54-204ENST00000506098 TRAV22A0A0B4J277 110 aa4.25□□□□□ -1.73
NUP54-204ENST00000506098 KRTAP13-2Q52LG2 175 aa4.25□□□□□ -1.73
NUP54-204ENST00000506098 LRP1Q07954 4544 aaKnown RBP4.24□□□□□ -1.73
NUP54-204ENST00000506098 PSPHP1O15172 72 aa4.24□□□□□ -1.73
NUP54-204ENST00000506098 LINC00313P59037 77 aa4.24□□□□□ -1.73
NUP54-204ENST00000506098 KRTAP10-8P60410 259 aa4.24□□□□□ -1.73
NUP54-204ENST00000506098 SSBP3-AS1Q7Z2R9 100 aa4.24□□□□□ -1.73
NUP54-204ENST00000506098 PDE6GP18545 87 aa4.23□□□□□ -1.73
NUP54-204ENST00000506098 Q8NBF4 154 aa4.23□□□□□ -1.73
NUP54-204ENST00000506098 CDC42SE1Q9NRR8 79 aa4.23□□□□□ -1.73
NUP54-204ENST00000506098 IGLV9-49A0A0B4J1Y8 123 aa4.22□□□□□ -1.73
NUP54-204ENST00000506098 KRTAP29-1A8MX34 341 aaPredicted RBP4.22□□□□□ -1.73
NUP54-204ENST00000506098 Q75L30 129 aa4.22□□□□□ -1.73
NUP54-204ENST00000506098 TYMSOSQ8TAI1 123 aa4.22□□□□□ -1.73
NUP54-204ENST00000506098 A0A0A0MQY5 61 aa4.21□□□□□ -1.74
NUP54-204ENST00000506098 MOBPQ13875 183 aa4.21□□□□□ -1.74
NUP54-204ENST00000506098 SNURFQ9Y675 71 aa4.21□□□□□ -1.74
NUP54-204ENST00000506098 DMBT1Q9UGM3 2413 aaPredicted RBP4.21□□□□□ -1.74
NUP54-204ENST00000506098 LOC101927531A0A1B0GV80 90 aa4.2□□□□□ -1.74
NUP54-204ENST00000506098 HCG22E2RYF7 251 aa4.2□□□□□ -1.74
NUP54-204ENST00000506098 MT1HL1P0DM35 61 aa4.2□□□□□ -1.74
NUP54-204ENST00000506098 Q5VV11 94 aa4.2□□□□□ -1.74
NUP54-204ENST00000506098 IGFL1Q6UW32 110 aa4.2□□□□□ -1.74
NUP54-204ENST00000506098 MYCBP2O75592 4640 aa4.19□□□□□ -1.74
NUP54-204ENST00000506098 LOC110117498A0A087WWA1 95 aa4.19□□□□□ -1.74
NUP54-204ENST00000506098 NDUFB1O75438 58 aa4.19□□□□□ -1.74
NUP54-204ENST00000506098 NREPQ16612 68 aa4.19□□□□□ -1.74
NUP54-204ENST00000506098 ABCA13Q86UQ4 5058 aa4.19□□□□□ -1.74
NUP54-204ENST00000506098 Q6ZQT0 140 aa4.18□□□□□ -1.74
NUP54-204ENST00000506098 C14orf132Q9NPU4 83 aa4.18□□□□□ -1.74
NUP54-204ENST00000506098 IGHV6-1A0A0B4J1U7 121 aa4.17□□□□□ -1.74
NUP54-204ENST00000506098 A0A0G2JQZ4 141 aa4.17□□□□□ -1.74
NUP54-204ENST00000506098 A0A1W2PNM2 257 aa4.17□□□□□ -1.74
NUP54-204ENST00000506098 RPS29P62273 56 aaKnown RBP4.17□□□□□ -1.74
NUP54-204ENST00000506098 SPAG11AQ6PDA7 123 aa4.17□□□□□ -1.74
NUP54-204ENST00000506098 LINC00304Q8N9R0 145 aa4.17□□□□□ -1.74
NUP54-204ENST00000506098 SPINK1P00995 79 aa4.16□□□□□ -1.74
NUP54-204ENST00000506098 C1orf64Q8NEQ6 169 aa4.16□□□□□ -1.74
NUP54-204ENST00000506098 CHKB-CPT1BH3BT56 60 aa4.15□□□□□ -1.75
NUP54-204ENST00000506098 OCR1Q9BZK8 76 aa4.14□□□□□ -1.75
NUP54-204ENST00000506098 BPY2O14599 106 aa4.13□□□□□ -1.75
NUP54-204ENST00000506098 CASC2Q6XLA1 102 aa4.13□□□□□ -1.75
NUP54-204ENST00000506098 SPTSSBQ8NFR3 76 aa4.13□□□□□ -1.75
NUP54-204ENST00000506098 SPANXA2-OT1Q8N9U9 137 aa4.12□□□□□ -1.75
NUP54-204ENST00000506098 Q8N9P0 234 aaPredicted RBP4.11□□□□□ -1.75
NUP54-204ENST00000506098 ZCCHC13Q8WW36 166 aaKnown RBP4.11□□□□□ -1.75
NUP54-204ENST00000506098 PCLOQ9Y6V0 5065 aa4.1□□□□□ -1.75
NUP54-204ENST00000506098 A0A087WSZ3 146 aa4.1□□□□□ -1.75
NUP54-204ENST00000506098 A6NED7 52 aa4.09□□□□□ -1.75
NUP54-204ENST00000506098 H3BPC8 53 aa4.08□□□□□ -1.76
NUP54-204ENST00000506098 Q96NJ1 140 aa4.08□□□□□ -1.76
NUP54-204ENST00000506098 RETNLBQ9BQ08 111 aa4.07□□□□□ -1.76
NUP54-204ENST00000506098 LINC00472Q9H8W2 130 aa4.07□□□□□ -1.76
NUP54-204ENST00000506098 PRR15LQ9BU68 103 aa4.05□□□□□ -1.76
NUP54-204ENST00000506098 LINC01558Q9Y6Z2 57 aa4.05□□□□□ -1.76
NUP54-204ENST00000506098 LINC00208Q96KT6 92 aa4.04□□□□□ -1.76
NUP54-204ENST00000506098 IGKV4-1P06312 121 aa4.02□□□□□ -1.77
NUP54-204ENST00000506098 SEC61BP60468 96 aaKnown RBP4.01□□□□□ -1.77
NUP54-204ENST00000506098 DEFB116Q30KQ4 102 aa4.01□□□□□ -1.77
NUP54-204ENST00000506098 A8MU10 97 aa4□□□□□ -1.77
NUP54-204ENST00000506098 DSCR10P59022 87 aa4□□□□□ -1.77
NUP54-204ENST00000506098 IGLV7-46A0A075B6I9 117 aa3.99□□□□□ -1.77
NUP54-204ENST00000506098 A8MWP4 228 aa3.99□□□□□ -1.77
NUP54-204ENST00000506098 A0A1B0GVX0 72 aa3.98□□□□□ -1.77
NUP54-204ENST00000506098 PRR4Q16378 134 aa3.98□□□□□ -1.77
NUP54-204ENST00000506098 TPRXLQ17RH7 258 aa3.98□□□□□ -1.77
NUP54-204ENST00000506098 KRTAP13-3Q3SY46 172 aa3.97□□□□□ -1.77
NUP54-204ENST00000506098 K7EQZ3 153 aa3.96□□□□□ -1.78
NUP54-204ENST00000506098 ROMO1P60602 79 aa3.95□□□□□ -1.78
NUP54-204ENST00000506098 HERC1Q15751 4861 aa3.95□□□□□ -1.78
NUP54-204ENST00000506098 LPAP08519 4548 aa3.95□□□□□ -1.78
NUP54-204ENST00000506098 C8orf17Q9NRJ1 99 aa3.94□□□□□ -1.78
NUP54-204ENST00000506098 MMP24-AS1A0A0U1RRL7 71 aa3.93□□□□□ -1.78
NUP54-204ENST00000506098 C9orf92A6NGG3 77 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms