RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 KRTAP10-2P60368 255 aa7.11□□□□□ -1.27
NUP54-202ENST00000502850 FAM229BQ4G0N7 80 aa7.1□□□□□ -1.27
NUP54-202ENST00000502850 C1orf64Q8NEQ6 169 aa7.1□□□□□ -1.27
NUP54-202ENST00000502850 ANAPC11Q9NYG5 84 aa7.1□□□□□ -1.27
NUP54-202ENST00000502850 IGHV6-1A0A0B4J1U7 121 aa7.09□□□□□ -1.27
NUP54-202ENST00000502850 C4orf26Q17RF5 130 aa7.09□□□□□ -1.27
NUP54-202ENST00000502850 FP248Q71RG6 208 aaPredicted RBP7.09□□□□□ -1.28
NUP54-202ENST00000502850 MRPL34Q9BQ48 92 aaKnown RBP7.09□□□□□ -1.28
NUP54-202ENST00000502850 C8orf87E5RJ46 101 aa7.06□□□□□ -1.28
NUP54-202ENST00000502850 NDUFS5O43920 106 aa7.05□□□□□ -1.28
NUP54-202ENST00000502850 KRTAP10-1P60331 282 aa7.05□□□□□ -1.28
NUP54-202ENST00000502850 KRTAP17-1Q9BYP8 105 aa7.05□□□□□ -1.28
NUP54-202ENST00000502850 DNAH5Q8TE73 4624 aa7.02□□□□□ -1.29
NUP54-202ENST00000502850 SPINK6Q6UWN8 80 aa7.01□□□□□ -1.29
NUP54-202ENST00000502850 LIMD2Q9BT23 127 aa7.01□□□□□ -1.29
NUP54-202ENST00000502850 DNAH11Q96DT5 4516 aa7.01□□□□□ -1.29
NUP54-202ENST00000502850 V9GYY9 64 aa7□□□□□ -1.29
NUP54-202ENST00000502850 IGLV7-46A0A075B6I9 117 aa6.99□□□□□ -1.29
NUP54-202ENST00000502850 PRR4Q16378 134 aa6.99□□□□□ -1.29
NUP54-202ENST00000502850 LOC101927531A0A1B0GV80 90 aa6.98□□□□□ -1.29
NUP54-202ENST00000502850 Q1T7F1 81 aa6.98□□□□□ -1.29
NUP54-202ENST00000502850 MPLKIPQ8TAP9 179 aa6.98□□□□□ -1.29
NUP54-202ENST00000502850 A0A087X002 238 aa6.97□□□□□ -1.29
NUP54-202ENST00000502850 HERC2O95714 4834 aa6.97□□□□□ -1.29
NUP54-202ENST00000502850 KIAA1109Q2LD37 5005 aa6.97□□□□□ -1.29
NUP54-202ENST00000502850 KRTAP13-2Q52LG2 175 aa6.96□□□□□ -1.3
NUP54-202ENST00000502850 C1orf195Q5TG92 126 aa6.95□□□□□ -1.3
NUP54-202ENST00000502850 PKD1P98161 4303 aa6.95□□□□□ -1.3
NUP54-202ENST00000502850 FAT2Q9NYQ8 4349 aa6.95□□□□□ -1.3
NUP54-202ENST00000502850 PKHD1P08F94 4074 aa6.95□□□□□ -1.3
NUP54-202ENST00000502850 LINC00313P59037 77 aa6.94□□□□□ -1.3
NUP54-202ENST00000502850 C4orf48Q5BLP8 95 aa6.94□□□□□ -1.3
NUP54-202ENST00000502850 NOTCH2NLQ7Z3S9 236 aa6.94□□□□□ -1.3
NUP54-202ENST00000502850 KRTAP1-4P0C5Y4 121 aa6.93□□□□□ -1.3
NUP54-202ENST00000502850 PCOTHQ58A44 107 aa6.92□□□□□ -1.3
NUP54-202ENST00000502850 FAM229AH3BQW9 127 aa6.91□□□□□ -1.3
NUP54-202ENST00000502850 PCLOQ9Y6V0 5065 aa6.91□□□□□ -1.3
NUP54-202ENST00000502850 PRO0628Q9UI54 55 aa6.9□□□□□ -1.3
NUP54-202ENST00000502850 SPINK1P00995 79 aa6.9□□□□□ -1.31
NUP54-202ENST00000502850 TYMSOSQ8TAI1 123 aa6.9□□□□□ -1.31
NUP54-202ENST00000502850 KRTAP4-5Q9BYR2 181 aa6.9□□□□□ -1.31
NUP54-202ENST00000502850 PLA2G1BP04054 148 aaKnown RBP6.89□□□□□ -1.31
NUP54-202ENST00000502850 COA5Q86WW8 74 aa6.89□□□□□ -1.31
NUP54-202ENST00000502850 Q8N9P0 234 aaPredicted RBP6.89□□□□□ -1.31
NUP54-202ENST00000502850 RPS29P62273 56 aaKnown RBP6.88□□□□□ -1.31
NUP54-202ENST00000502850 KRTAP13-3Q3SY46 172 aa6.88□□□□□ -1.31
NUP54-202ENST00000502850 SPAG11AQ6PDA7 123 aa6.87□□□□□ -1.31
NUP54-202ENST00000502850 LRP1BQ9NZR2 4599 aa6.85□□□□□ -1.31
NUP54-202ENST00000502850 Q5W150 140 aa6.84□□□□□ -1.31
NUP54-202ENST00000502850 Q8N1X5 172 aa6.84□□□□□ -1.31
NUP54-202ENST00000502850 DYNC1H1Q14204 4646 aaKnown RBP6.84□□□□□ -1.31
NUP54-202ENST00000502850 BRK1Q8WUW1 75 aa6.83□□□□□ -1.32
NUP54-202ENST00000502850 LINC00304Q8N9R0 145 aa6.82□□□□□ -1.32
NUP54-202ENST00000502850 RYR1P21817 5038 aa6.81□□□□□ -1.32
NUP54-202ENST00000502850 KRTAP16-1A8MUX0 517 aa6.81□□□□□ -1.32
NUP54-202ENST00000502850 PSPHP1O15172 72 aa6.79□□□□□ -1.32
NUP54-202ENST00000502850 IGKV2-30P06310 120 aa6.79□□□□□ -1.32
NUP54-202ENST00000502850 HRES1P13985 223 aa6.78□□□□□ -1.32
NUP54-202ENST00000502850 ACYP2P14621 99 aa6.78□□□□□ -1.32
NUP54-202ENST00000502850 HSPG2P98160 4391 aa6.77□□□□□ -1.33
NUP54-202ENST00000502850 A8MUN3 132 aa6.76□□□□□ -1.33
NUP54-202ENST00000502850 VPS13BQ7Z7G8 4022 aa6.75□□□□□ -1.33
NUP54-202ENST00000502850 Q5VV11 94 aa6.75□□□□□ -1.33
NUP54-202ENST00000502850 PRR26Q8N8Z3 221 aa6.75□□□□□ -1.33
NUP54-202ENST00000502850 DMAC1Q96GE9 116 aa6.75□□□□□ -1.33
NUP54-202ENST00000502850 PRR15LQ9BU68 103 aa6.75□□□□□ -1.33
NUP54-202ENST00000502850 ABCA13Q86UQ4 5058 aa6.75□□□□□ -1.33
NUP54-202ENST00000502850 LINC01558Q9Y6Z2 57 aa6.74□□□□□ -1.33
NUP54-202ENST00000502850 Q75L30 129 aa6.73□□□□□ -1.33
NUP54-202ENST00000502850 CHKB-CPT1BH3BT56 60 aa6.71□□□□□ -1.34
NUP54-202ENST00000502850 SMR3BP02814 79 aaPredicted RBP6.71□□□□□ -1.34
NUP54-202ENST00000502850 Q5VSD8 79 aa6.71□□□□□ -1.34
NUP54-202ENST00000502850 RETNLBQ9BQ08 111 aa6.7□□□□□ -1.34
NUP54-202ENST00000502850 APOBP04114 4563 aaKnown RBP6.69□□□□□ -1.34
NUP54-202ENST00000502850 IGKV2D-30A0A075B6S6 120 aa6.67□□□□□ -1.34
NUP54-202ENST00000502850 KRTAP10-4P60372 401 aaPredicted RBP6.67□□□□□ -1.34
NUP54-202ENST00000502850 C7orf65Q6ZTY9 151 aa6.66□□□□□ -1.34
NUP54-202ENST00000502850 A6NED7 52 aa6.64□□□□□ -1.35
NUP54-202ENST00000502850 FLG2Q5D862 2391 aaPredicted RBP6.63□□□□□ -1.35
NUP54-202ENST00000502850 KRTAP3-3Q9BYR6 98 aa6.62□□□□□ -1.35
NUP54-202ENST00000502850 KRTAP3-2Q9BYR7 98 aa6.62□□□□□ -1.35
NUP54-202ENST00000502850 A8MUU9 505 aa6.61□□□□□ -1.35
NUP54-202ENST00000502850 C20orf166-AS1Q96NR2 134 aa6.61□□□□□ -1.35
NUP54-202ENST00000502850 DMBT1Q9UGM3 2413 aaPredicted RBP6.58□□□□□ -1.36
NUP54-202ENST00000502850 CDC42SE1Q9NRR8 79 aa6.58□□□□□ -1.36
NUP54-202ENST00000502850 PKHD1L1Q86WI1 4243 aa6.56□□□□□ -1.36
NUP54-202ENST00000502850 ATP11AUNQ6ZP68 121 aa6.55□□□□□ -1.36
NUP54-202ENST00000502850 J3QL48 77 aa6.54□□□□□ -1.36
NUP54-202ENST00000502850 A0A1B0GU69 56 aa6.54□□□□□ -1.36
NUP54-202ENST00000502850 C9orf92A6NGG3 77 aa6.54□□□□□ -1.36
NUP54-202ENST00000502850 FAT1Q14517 4588 aa6.54□□□□□ -1.36
NUP54-202ENST00000502850 SPTSSBQ8NFR3 76 aa6.53□□□□□ -1.36
NUP54-202ENST00000502850 LCA10Q71F78 164 aa6.51□□□□□ -1.37
NUP54-202ENST00000502850 SPINK7P58062 85 aa6.48□□□□□ -1.37
NUP54-202ENST00000502850 PMAIP1Q13794 54 aa6.47□□□□□ -1.37
NUP54-202ENST00000502850 HERC1Q15751 4861 aa6.47□□□□□ -1.37
NUP54-202ENST00000502850 MYCBP2O75592 4640 aa6.47□□□□□ -1.37
NUP54-202ENST00000502850 KRTAP10-8P60410 259 aa6.47□□□□□ -1.37
NUP54-202ENST00000502850 A8MU10 97 aa6.44□□□□□ -1.38
NUP54-202ENST00000502850 SEC61GP60059 68 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms