RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 NISCHQ9Y2I1 1504 aa25.7■■□□□ 1.7
NUP54-202ENST00000502850 CCDC180Q9P1Z9 1646 aa22.41■■□□□ 1.18
NUP54-202ENST00000502850 ABCC9O60706 1549 aa22.24■■□□□ 1.15
NUP54-202ENST00000502850 ZCCHC6Q5VYS8 1495 aaKnown RBP21.73■■□□□ 1.07
NUP54-202ENST00000502850 DCAF1Q9Y4B6 1507 aa21.33■■□□□ 1
NUP54-202ENST00000502850 SHROOM4Q9ULL8 1493 aa21.26■□□□□ 0.99
NUP54-202ENST00000502850 RB1CC1Q8TDY2 1594 aa21.25■□□□□ 0.99
NUP54-202ENST00000502850 NACADO15069 1562 aa21.14■□□□□ 0.98
NUP54-202ENST00000502850 DCAF8L2P0C7V8 631 aa21.11■□□□□ 0.97
NUP54-202ENST00000502850 MYO15BQ96JP2 1530 aa20.9■□□□□ 0.94
NUP54-202ENST00000502850 UNC13AQ9UPW8 1703 aa20.8■□□□□ 0.92
NUP54-202ENST00000502850 PABPN1Q86U42 306 aaKnown RBP eCLIP20.75■□□□□ 0.91
NUP54-202ENST00000502850 SUPT5HO00267 1087 aaKnown RBP20.74■□□□□ 0.91
NUP54-202ENST00000502850 DNAJC5BQ9UF47 199 aa20.73■□□□□ 0.91
NUP54-202ENST00000502850 BICRAQ9NZM4 1560 aa20.61■□□□□ 0.89
NUP54-202ENST00000502850 SCRIBQ14160 1630 aa20.45■□□□□ 0.86
NUP54-202ENST00000502850 CHIC1Q5VXU3 224 aa20.16■□□□□ 0.82
NUP54-202ENST00000502850 RSF1Q96T23 1441 aaPredicted RBP20.11■□□□□ 0.81
NUP54-202ENST00000502850 CC2D2AQ9P2K1 1620 aa20.11■□□□□ 0.81
NUP54-202ENST00000502850 EIF4G1Q04637 1599 aaKnown RBP20.09■□□□□ 0.81
NUP54-202ENST00000502850 CECR2Q9BXF3 1484 aa20.01■□□□□ 0.79
NUP54-202ENST00000502850 BAZ1AQ9NRL2 1556 aaPredicted RBP19.86■□□□□ 0.77
NUP54-202ENST00000502850 MROH2BQ7Z745 1585 aa19.84■□□□□ 0.77
NUP54-202ENST00000502850 WIZO95785 1651 aa19.73■□□□□ 0.75
NUP54-202ENST00000502850 SMARCA4P51532 1647 aa19.68■□□□□ 0.74
NUP54-202ENST00000502850 TOP2AP11388 1531 aaKnown RBP19.6■□□□□ 0.73
NUP54-202ENST00000502850 TRIM41Q8WV44 630 aa19.52■□□□□ 0.72
NUP54-202ENST00000502850 NCAPD3P42695 1498 aa19.51■□□□□ 0.71
NUP54-202ENST00000502850 ATAD2BQ9ULI0 1458 aa19.47■□□□□ 0.71
NUP54-202ENST00000502850 SMARCA2P51531 1590 aa19.44■□□□□ 0.7
NUP54-202ENST00000502850 PEG3Q9GZU2 1588 aa19.43■□□□□ 0.7
NUP54-202ENST00000502850 HMGXB3Q12766 1538 aa19.37■□□□□ 0.69
NUP54-202ENST00000502850 LOC105371045A0A1W2PR82 267 aa19.35■□□□□ 0.69
NUP54-202ENST00000502850 CCDC88BA6NC98 1476 aa19.34■□□□□ 0.69
NUP54-202ENST00000502850 BAZ1BQ9UIG0 1483 aaKnown RBP19.3■□□□□ 0.68
NUP54-202ENST00000502850 ERCC6Q03468 1493 aa19.19■□□□□ 0.66
NUP54-202ENST00000502850 NESP48681 1621 aa19.15■□□□□ 0.66
NUP54-202ENST00000502850 PCGF6Q9BYE7 350 aa19.14■□□□□ 0.66
NUP54-202ENST00000502850 HRCP23327 699 aa19.12■□□□□ 0.65
NUP54-202ENST00000502850 ABCC8Q09428 1581 aa19.11■□□□□ 0.65
NUP54-202ENST00000502850 CUX2O14529 1486 aa19.1■□□□□ 0.65
NUP54-202ENST00000502850 FAM9AQ8IZU1 332 aaPredicted RBP19.1■□□□□ 0.65
NUP54-202ENST00000502850 EEA1Q15075 1411 aa19.08■□□□□ 0.65
NUP54-202ENST00000502850 TRIM26Q12899 539 aaPredicted RBP19.07■□□□□ 0.64
NUP54-202ENST00000502850 LAMC3Q9Y6N6 1575 aa19.05■□□□□ 0.64
NUP54-202ENST00000502850 WRNQ14191 1432 aaPredicted RBP eCLIP18.96■□□□□ 0.63
NUP54-202ENST00000502850 PDS5BQ9NTI5 1447 aa18.94■□□□□ 0.62
NUP54-202ENST00000502850 DNAJC5Q9H3Z4 198 aa18.93■□□□□ 0.62
NUP54-202ENST00000502850 CADPSQ9ULU8 1353 aa18.93■□□□□ 0.62
NUP54-202ENST00000502850 KIF21AQ7Z4S6 1674 aa18.93■□□□□ 0.62
NUP54-202ENST00000502850 THOC2Q8NI27 1593 aaKnown RBP18.91■□□□□ 0.62
NUP54-202ENST00000502850 SYNJ1O43426 1573 aa18.85■□□□□ 0.61
NUP54-202ENST00000502850 SOGA1O94964 1423 aa18.84■□□□□ 0.61
NUP54-202ENST00000502850 TNIKQ9UKE5 1360 aa18.81■□□□□ 0.6
NUP54-202ENST00000502850 GOLGA3Q08378 1498 aa18.8■□□□□ 0.6
NUP54-202ENST00000502850 KIF21BO75037 1637 aa18.79■□□□□ 0.6
NUP54-202ENST00000502850 CSRNP3Q8WYN3 585 aa18.78■□□□□ 0.6
NUP54-202ENST00000502850 TOP2BQ02880 1626 aa18.78■□□□□ 0.6
NUP54-202ENST00000502850 BIVM-ERCC5R4GMW8 1640 aa18.78■□□□□ 0.6
NUP54-202ENST00000502850 MRC2Q9UBG0 1479 aa18.75■□□□□ 0.59
NUP54-202ENST00000502850 EHMT2Q96KQ7 1210 aa18.75■□□□□ 0.59
NUP54-202ENST00000502850 CFTRP13569 1480 aa18.75■□□□□ 0.59
NUP54-202ENST00000502850 CEP164Q9UPV0 1460 aa18.75■□□□□ 0.59
NUP54-202ENST00000502850 CEP162Q5TB80 1403 aa18.74■□□□□ 0.59
NUP54-202ENST00000502850 PRDM2Q13029 1718 aa18.74■□□□□ 0.59
NUP54-202ENST00000502850 ZEB1P37275 1124 aaPredicted RBP18.71■□□□□ 0.59
NUP54-202ENST00000502850 FANCD2Q9BXW9 1451 aa18.71■□□□□ 0.59
NUP54-202ENST00000502850 RUSC2Q8N2Y8 1516 aa18.7■□□□□ 0.58
NUP54-202ENST00000502850 WDR62O43379 1518 aa18.69■□□□□ 0.58
NUP54-202ENST00000502850 UBTFP17480 764 aaKnown RBP18.6■□□□□ 0.57
NUP54-202ENST00000502850 ERICH3Q5RHP9 1530 aa18.56■□□□□ 0.56
NUP54-202ENST00000502850 URB2Q14146 1524 aaKnown RBP18.54■□□□□ 0.56
NUP54-202ENST00000502850 CUX1P39880 1505 aa18.53■□□□□ 0.56
NUP54-202ENST00000502850 CLIP1P30622 1438 aa18.48■□□□□ 0.55
NUP54-202ENST00000502850 RAPGEF2Q9Y4G8 1499 aa18.46■□□□□ 0.55
NUP54-202ENST00000502850 KIF27Q86VH2 1401 aa18.46■□□□□ 0.55
NUP54-202ENST00000502850 PPARGC1BQ86YN6 1023 aaKnown RBP18.45■□□□□ 0.54
NUP54-202ENST00000502850 PRXQ9BXM0 1461 aa18.44■□□□□ 0.54
NUP54-202ENST00000502850 VPS8Q8N3P4 1428 aa18.42■□□□□ 0.54
NUP54-202ENST00000502850 TOPBP1Q92547 1522 aa18.37■□□□□ 0.53
NUP54-202ENST00000502850 IFT140Q96RY7 1462 aa18.34■□□□□ 0.53
NUP54-202ENST00000502850 DNMBPQ6XZF7 1577 aa18.32■□□□□ 0.52
NUP54-202ENST00000502850 OSCARQ8IYS5 282 aa18.3■□□□□ 0.52
NUP54-202ENST00000502850 ZNF608Q9ULD9 1512 aaPredicted RBP18.28■□□□□ 0.52
NUP54-202ENST00000502850 APLP2Q06481 763 aa18.27■□□□□ 0.52
NUP54-202ENST00000502850 FGD5Q6ZNL6 1462 aa18.25■□□□□ 0.51
NUP54-202ENST00000502850 CCER1Q8TC90 406 aaPredicted RBP18.22■□□□□ 0.51
NUP54-202ENST00000502850 TARBP1Q13395 1621 aaKnown RBP18.2■□□□□ 0.5
NUP54-202ENST00000502850 ARAP1Q96P48 1450 aa18.2■□□□□ 0.5
NUP54-202ENST00000502850 EIF4G3O43432 1585 aaKnown RBP18.19■□□□□ 0.5
NUP54-202ENST00000502850 POLA1P09884 1462 aaPredicted RBP18.19■□□□□ 0.5
NUP54-202ENST00000502850 AQRO60306 1485 aaKnown RBP eCLIP18.16■□□□□ 0.5
NUP54-202ENST00000502850 TTBK1Q5TCY1 1321 aaPredicted RBP18.15■□□□□ 0.5
NUP54-202ENST00000502850 IGF1RP08069 1367 aa18.14■□□□□ 0.49
NUP54-202ENST00000502850 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.13■□□□□ 0.49
NUP54-202ENST00000502850 ABCA10Q8WWZ4 1543 aa18.13■□□□□ 0.49
NUP54-202ENST00000502850 RAD54L2Q9Y4B4 1467 aa18.13■□□□□ 0.49
NUP54-202ENST00000502850 CUL7Q14999 1698 aa18.12■□□□□ 0.49
NUP54-202ENST00000502850 CARMIL1Q5VZK9 1371 aa18.1■□□□□ 0.49
NUP54-202ENST00000502850 ARHGAP35Q9NRY4 1499 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms