RNA–Protein interactions for RNA: ENST00000481194.1

CCM2-214, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 5,304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-214ENST00000481194 NBPF19A0A087WUL8 3843 aa11.17□□□□□ -0.62
CCM2-214ENST00000481194 KRTAP13-2Q52LG2 175 aa11.16□□□□□ -0.62
CCM2-214ENST00000481194 SEC61BP60468 96 aaKnown RBP11.16□□□□□ -0.62
CCM2-214ENST00000481194 Q5W150 140 aa11.13□□□□□ -0.63
CCM2-214ENST00000481194 KRTAP29-1A8MX34 341 aaPredicted RBP11.1□□□□□ -0.63
CCM2-214ENST00000481194 HRES1P13985 223 aa11.1□□□□□ -0.63
CCM2-214ENST00000481194 SPINT4Q6UDR6 99 aa11.1□□□□□ -0.63
CCM2-214ENST00000481194 CRIPTQ9P021 101 aa11.08□□□□□ -0.64
CCM2-214ENST00000481194 SMG1Q96Q15 3661 aaKnown RBP11.06□□□□□ -0.64
CCM2-214ENST00000481194 SPENQ96T58 3664 aaKnown RBP11.06□□□□□ -0.64
CCM2-214ENST00000481194 CDC42SE1Q9NRR8 79 aa11.01□□□□□ -0.65
CCM2-214ENST00000481194 Q1T7F1 81 aa11□□□□□ -0.65
CCM2-214ENST00000481194 TENM1Q9UKZ4 2725 aa11□□□□□ -0.65
CCM2-214ENST00000481194 SPINK7P58062 85 aa11□□□□□ -0.65
CCM2-214ENST00000481194 A0A1B0GVY2 172 aa10.98□□□□□ -0.65
CCM2-214ENST00000481194 Q8N9P0 234 aaPredicted RBP10.98□□□□□ -0.65
CCM2-214ENST00000481194 KTN1-AS1Q86SY8 53 aa10.98□□□□□ -0.65
CCM2-214ENST00000481194 KRTAP1-4P0C5Y4 121 aa10.94□□□□□ -0.66
CCM2-214ENST00000481194 LCA10Q71F78 164 aa10.91□□□□□ -0.66
CCM2-214ENST00000481194 TENM3Q9P273 2699 aa10.9□□□□□ -0.66
CCM2-214ENST00000481194 CELSR1Q9NYQ6 3014 aa10.9□□□□□ -0.66
CCM2-214ENST00000481194 Q75L30 129 aa10.89□□□□□ -0.67
CCM2-214ENST00000481194 FBN1P35555 2871 aaKnown RBP10.87□□□□□ -0.67
CCM2-214ENST00000481194 S4R3F8 94 aa10.85□□□□□ -0.67
CCM2-214ENST00000481194 NOTCH2NLQ7Z3S9 236 aa10.85□□□□□ -0.67
CCM2-214ENST00000481194 A0A0D9SG42 100 aa10.82□□□□□ -0.68
CCM2-214ENST00000481194 CSAG1Q6PB30 78 aa10.8□□□□□ -0.68
CCM2-214ENST00000481194 DMAC1Q96GE9 116 aa10.8□□□□□ -0.68
CCM2-214ENST00000481194 LINC01558Q9Y6Z2 57 aa10.79□□□□□ -0.68
CCM2-214ENST00000481194 LINC01554Q52M75 96 aa10.78□□□□□ -0.68
CCM2-214ENST00000481194 A0A1B0GU33 70 aa10.77□□□□□ -0.68
CCM2-214ENST00000481194 RPL37P61927 97 aaKnown RBP10.77□□□□□ -0.69
CCM2-214ENST00000481194 CSMD1Q96PZ7 3565 aa10.76□□□□□ -0.69
CCM2-214ENST00000481194 CYSTM1Q9H1C7 97 aa10.74□□□□□ -0.69
CCM2-214ENST00000481194 VWFP04275 2813 aa10.71□□□□□ -0.7
CCM2-214ENST00000481194 A8MUU9 505 aa10.69□□□□□ -0.7
CCM2-214ENST00000481194 C20orf166-AS1Q96NR2 134 aa10.68□□□□□ -0.7
CCM2-214ENST00000481194 AKAP9Q99996 3911 aa10.68□□□□□ -0.7
CCM2-214ENST00000481194 CSMD2Q7Z408 3487 aa10.65□□□□□ -0.7
CCM2-214ENST00000481194 M0R2T5 61 aa10.65□□□□□ -0.7
CCM2-214ENST00000481194 TENM2Q9NT68 2774 aa10.62□□□□□ -0.71
CCM2-214ENST00000481194 CAMK2N1Q7Z7J9 78 aa10.57□□□□□ -0.72
CCM2-214ENST00000481194 ZFHX3Q15911 3703 aa10.56□□□□□ -0.72
CCM2-214ENST00000481194 SVEP1Q4LDE5 3571 aa10.55□□□□□ -0.72
CCM2-214ENST00000481194 H1FX-AS1Q4G0G2 97 aa10.54□□□□□ -0.72
CCM2-214ENST00000481194 Q5VV11 94 aa10.54□□□□□ -0.72
CCM2-214ENST00000481194 HUWE1Q7Z6Z7 4374 aaKnown RBP10.54□□□□□ -0.72
CCM2-214ENST00000481194 TPRXLQ17RH7 258 aa10.52□□□□□ -0.73
CCM2-214ENST00000481194 KRTAP10-8P60410 259 aa10.52□□□□□ -0.73
CCM2-214ENST00000481194 LUZP6Q538Z0 58 aa10.48□□□□□ -0.73
CCM2-214ENST00000481194 XP32Q5T750 250 aa10.46□□□□□ -0.73
CCM2-214ENST00000481194 TRRAPQ9Y4A5 3859 aa10.45□□□□□ -0.74
CCM2-214ENST00000481194 DMBT1Q9UGM3 2413 aaPredicted RBP10.45□□□□□ -0.74
CCM2-214ENST00000481194 ALMS1Q8TCU4 4167 aa10.43□□□□□ -0.74
CCM2-214ENST00000481194 KRTAP16-1A8MUX0 517 aa10.4□□□□□ -0.74
CCM2-214ENST00000481194 R4GN34 69 aa10.37□□□□□ -0.75
CCM2-214ENST00000481194 KRTAP13-3Q3SY46 172 aa10.35□□□□□ -0.75
CCM2-214ENST00000481194 ZNF469Q96JG9 3925 aaPredicted RBP10.34□□□□□ -0.75
CCM2-214ENST00000481194 PRAC1Q96KF2 57 aa10.27□□□□□ -0.77
CCM2-214ENST00000481194 PKD1L1Q8TDX9 2849 aa10.27□□□□□ -0.77
CCM2-214ENST00000481194 DNAH9Q9NYC9 4486 aa10.27□□□□□ -0.77
CCM2-214ENST00000481194 FLG2Q5D862 2391 aaPredicted RBP10.27□□□□□ -0.77
CCM2-214ENST00000481194 ADM2Q7Z4H4 148 aa10.26□□□□□ -0.77
CCM2-214ENST00000481194 VPS13CQ709C8 3753 aa10.24□□□□□ -0.77
CCM2-214ENST00000481194 TGP01266 2768 aa10.23□□□□□ -0.77
CCM2-214ENST00000481194 FBN3Q75N90 2809 aa10.23□□□□□ -0.77
CCM2-214ENST00000481194 ROMO1P60602 79 aa10.22□□□□□ -0.77
CCM2-214ENST00000481194 M0QZ58 72 aa10.19□□□□□ -0.78
CCM2-214ENST00000481194 SPATA8Q6RVD6 105 aa10.09□□□□□ -0.79
CCM2-214ENST00000481194 CUBNO60494 3623 aa10.03□□□□□ -0.8
CCM2-214ENST00000481194 KRTAP10-4P60372 401 aaPredicted RBP10.02□□□□□ -0.8
CCM2-214ENST00000481194 ANK2Q01484 3957 aa10□□□□□ -0.81
CCM2-214ENST00000481194 PLAC4Q8WY50 150 aa9.99□□□□□ -0.81
CCM2-214ENST00000481194 A0A0A0MQY5 61 aa9.96□□□□□ -0.82
CCM2-214ENST00000481194 MT1HL1P0DM35 61 aa9.9□□□□□ -0.82
CCM2-214ENST00000481194 MEGF8Q7Z7M0 2845 aa9.9□□□□□ -0.82
CCM2-214ENST00000481194 A6NN06 94 aa9.84□□□□□ -0.83
CCM2-214ENST00000481194 VPS13DQ5THJ4 4388 aa9.83□□□□□ -0.84
CCM2-214ENST00000481194 DNAH3Q8TD57 4116 aa9.82□□□□□ -0.84
CCM2-214ENST00000481194 H3BS24 57 aa9.8□□□□□ -0.84
CCM2-214ENST00000481194 PLECQ15149 4684 aaKnown RBP9.75□□□□□ -0.85
CCM2-214ENST00000481194 A8MU10 97 aa9.75□□□□□ -0.85
CCM2-214ENST00000481194 KRTAP25-1Q3LHN0 102 aa9.75□□□□□ -0.85
CCM2-214ENST00000481194 DNAH1Q9P2D7 4330 aa9.73□□□□□ -0.85
CCM2-214ENST00000481194 CMYA5Q8N3K9 4069 aa9.66□□□□□ -0.86
CCM2-214ENST00000481194 DNAH17Q9UFH2 4485 aa9.65□□□□□ -0.86
CCM2-214ENST00000481194 DNAH10Q8IVF4 4471 aa9.64□□□□□ -0.87
CCM2-214ENST00000481194 KRTAP4-5Q9BYR2 181 aa9.61□□□□□ -0.87
CCM2-214ENST00000481194 DNAH6Q9C0G6 4158 aa9.6□□□□□ -0.87
CCM2-214ENST00000481194 DNAH11Q96DT5 4516 aa9.6□□□□□ -0.87
CCM2-214ENST00000481194 DYNC2H1Q8NCM8 4307 aaKnown RBP9.57□□□□□ -0.88
CCM2-214ENST00000481194 DNHD1Q96M86 4753 aa9.55□□□□□ -0.88
CCM2-214ENST00000481194 STARD9Q9P2P6 4700 aa9.53□□□□□ -0.88
CCM2-214ENST00000481194 PRKDCP78527 4128 aaKnown RBP9.5□□□□□ -0.89
CCM2-214ENST00000481194 H0YAA0 97 aa9.5□□□□□ -0.89
CCM2-214ENST00000481194 DNAH5Q8TE73 4624 aa9.49□□□□□ -0.89
CCM2-214ENST00000481194 COL7A1Q02388 2944 aa9.48□□□□□ -0.89
CCM2-214ENST00000481194 KRTAP10-10P60014 251 aa9.48□□□□□ -0.89
CCM2-214ENST00000481194 TNP1P09430 55 aa9.47□□□□□ -0.89
CCM2-214ENST00000481194 KRTAP3-1Q9BYR8 98 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms