RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PKD1L2Q7Z442 2459 aa-0.55□□□□□ -2.5
UPF3B-203ENST00000478840 DEFB106AQ8N104 65 aa-0.56□□□□□ -2.5
UPF3B-203ENST00000478840 ABCA13Q86UQ4 5058 aa-0.56□□□□□ -2.5
UPF3B-203ENST00000478840 CEP290O15078 2479 aa-0.56□□□□□ -2.5
UPF3B-203ENST00000478840 NRAPQ86VF7 1730 aa-0.56□□□□□ -2.5
UPF3B-203ENST00000478840 ZZEF1O43149 2961 aa-0.57□□□□□ -2.5
UPF3B-203ENST00000478840 DNAH6Q9C0G6 4158 aa-0.57□□□□□ -2.5
UPF3B-203ENST00000478840 MINOS1Q5TGZ0 78 aa-0.57□□□□□ -2.5
UPF3B-203ENST00000478840 TEP1Q99973 2627 aaKnown RBP-0.57□□□□□ -2.5
UPF3B-203ENST00000478840 FASNP49327 2511 aaKnown RBP-0.58□□□□□ -2.5
UPF3B-203ENST00000478840 MUC17Q685J3 4493 aa-0.58□□□□□ -2.5
UPF3B-203ENST00000478840 WT1-ASQ06250 92 aa-0.58□□□□□ -2.5
UPF3B-203ENST00000478840 ANKRD11Q6UB99 2663 aaPredicted RBP-0.58□□□□□ -2.5
UPF3B-203ENST00000478840 DNAH2Q9P225 4427 aa-0.58□□□□□ -2.5
UPF3B-203ENST00000478840 ASXL1Q8IXJ9 1541 aa-0.59□□□□□ -2.5
UPF3B-203ENST00000478840 BPTFQ12830 3046 aa-0.6□□□□□ -2.51
UPF3B-203ENST00000478840 COL12A1Q99715 3063 aa-0.61□□□□□ -2.51
UPF3B-203ENST00000478840 DNAH3Q8TD57 4116 aa-0.61□□□□□ -2.51
UPF3B-203ENST00000478840 TACC2O95359 2948 aa-0.61□□□□□ -2.51
UPF3B-203ENST00000478840 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.61□□□□□ -2.51
UPF3B-203ENST00000478840 ABCA9Q8IUA7 1624 aa-0.61□□□□□ -2.51
UPF3B-203ENST00000478840 DMXL1Q9Y485 3027 aa-0.62□□□□□ -2.51
UPF3B-203ENST00000478840 ITSN2Q9NZM3 1697 aa-0.62□□□□□ -2.51
UPF3B-203ENST00000478840 ABCC6O95255 1503 aa-0.62□□□□□ -2.51
UPF3B-203ENST00000478840 RPS27P42677 84 aaKnown RBP-0.62□□□□□ -2.51
UPF3B-203ENST00000478840 RPS27LQ71UM5 84 aaKnown RBP-0.62□□□□□ -2.51
UPF3B-203ENST00000478840 VPS13DQ5THJ4 4388 aa-0.62□□□□□ -2.51
UPF3B-203ENST00000478840 DNMBPQ6XZF7 1577 aa-0.62□□□□□ -2.51
UPF3B-203ENST00000478840 ITPR3Q14573 2671 aa-0.62□□□□□ -2.51
UPF3B-203ENST00000478840 PLECQ15149 4684 aaKnown RBP-0.63□□□□□ -2.51
UPF3B-203ENST00000478840 PKHD1L1Q86WI1 4243 aa-0.63□□□□□ -2.51
UPF3B-203ENST00000478840 GCN1Q92616 2671 aaKnown RBP-0.63□□□□□ -2.51
UPF3B-203ENST00000478840 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.64□□□□□ -2.51
UPF3B-203ENST00000478840 CUBNO60494 3623 aa-0.64□□□□□ -2.51
UPF3B-203ENST00000478840 C3P01024 1663 aa-0.64□□□□□ -2.51
UPF3B-203ENST00000478840 USP9YO00507 2555 aaPredicted RBP-0.64□□□□□ -2.51
UPF3B-203ENST00000478840 ANK3Q12955 4377 aaKnown RBP-0.64□□□□□ -2.51
UPF3B-203ENST00000478840 LRRK2Q5S007 2527 aa-0.65□□□□□ -2.51
UPF3B-203ENST00000478840 DNAH9Q9NYC9 4486 aa-0.65□□□□□ -2.51
UPF3B-203ENST00000478840 H3BUA1 57 aa-0.65□□□□□ -2.51
UPF3B-203ENST00000478840 C6orf48Q9UBA6 75 aa-0.65□□□□□ -2.51
UPF3B-203ENST00000478840 HTTP42858 3142 aa-0.65□□□□□ -2.51
UPF3B-203ENST00000478840 K7EMI3 77 aa-0.66□□□□□ -2.52
UPF3B-203ENST00000478840 FAM186AA6NE01 2351 aa-0.66□□□□□ -2.52
UPF3B-203ENST00000478840 WDR87Q6ZQQ6 2873 aa-0.66□□□□□ -2.52
UPF3B-203ENST00000478840 CELSR3Q9NYQ7 3312 aa-0.66□□□□□ -2.52
UPF3B-203ENST00000478840 KIF1AQ12756 1690 aa-0.67□□□□□ -2.52
UPF3B-203ENST00000478840 AKAP9Q99996 3911 aa-0.68□□□□□ -2.52
UPF3B-203ENST00000478840 VPS13BQ7Z7G8 4022 aa-0.68□□□□□ -2.52
UPF3B-203ENST00000478840 DYNC1H1Q14204 4646 aaKnown RBP-0.68□□□□□ -2.52
UPF3B-203ENST00000478840 APOBP04114 4563 aaKnown RBP-0.68□□□□□ -2.52
UPF3B-203ENST00000478840 UTP20O75691 2785 aaKnown RBP-0.68□□□□□ -2.52
UPF3B-203ENST00000478840 ANKRD36CQ5JPF3 1778 aa-0.69□□□□□ -2.52
UPF3B-203ENST00000478840 LINC01549A6NIU2 74 aa-0.69□□□□□ -2.52
UPF3B-203ENST00000478840 ACACAQ13085 2346 aa-0.7□□□□□ -2.52
UPF3B-203ENST00000478840 MROH1Q8NDA8 1641 aa-0.7□□□□□ -2.52
UPF3B-203ENST00000478840 DNAH7Q8WXX0 4024 aa-0.7□□□□□ -2.52
UPF3B-203ENST00000478840 TOGARAM1Q9Y4F4 1720 aa-0.7□□□□□ -2.52
UPF3B-203ENST00000478840 NIPBLQ6KC79 2804 aaeCLIP-0.71□□□□□ -2.52
UPF3B-203ENST00000478840 FCER1GP30273 86 aa-0.71□□□□□ -2.52
UPF3B-203ENST00000478840 NCBP2-AS2Q69YL0 99 aa-0.71□□□□□ -2.52
UPF3B-203ENST00000478840 EFCAB5A4FU69 1503 aa-0.71□□□□□ -2.52
UPF3B-203ENST00000478840 MYO18BQ8IUG5 2567 aa-0.71□□□□□ -2.52
UPF3B-203ENST00000478840 USP9XQ93008 2570 aaPredicted RBP-0.71□□□□□ -2.52
UPF3B-203ENST00000478840 CMYA5Q8N3K9 4069 aa-0.71□□□□□ -2.52
UPF3B-203ENST00000478840 NBEAQ8NFP9 2946 aa-0.72□□□□□ -2.52
UPF3B-203ENST00000478840 LAMA3Q16787 3333 aa-0.72□□□□□ -2.52
UPF3B-203ENST00000478840 DEFB110Q30KQ9 67 aa-0.73□□□□□ -2.53
UPF3B-203ENST00000478840 SACSQ9NZJ4 4579 aa-0.73□□□□□ -2.53
UPF3B-203ENST00000478840 COL6A5A8TX70 2615 aa-0.73□□□□□ -2.53
UPF3B-203ENST00000478840 CLASP1Q7Z460 1538 aa-0.74□□□□□ -2.53
UPF3B-203ENST00000478840 IGLV5-48A0A075B6I7 105 aa-0.74□□□□□ -2.53
UPF3B-203ENST00000478840 MGAM2Q2M2H8 2515 aa-0.74□□□□□ -2.53
UPF3B-203ENST00000478840 LAMA1P25391 3075 aa-0.75□□□□□ -2.53
UPF3B-203ENST00000478840 A0A087WWC5 75 aa-0.75□□□□□ -2.53
UPF3B-203ENST00000478840 SERF2P84101 59 aa-0.75□□□□□ -2.53
UPF3B-203ENST00000478840 NOP10Q9NPE3 64 aaKnown RBP-0.75□□□□□ -2.53
UPF3B-203ENST00000478840 NBEAL2Q6ZNJ1 2754 aa-0.75□□□□□ -2.53
UPF3B-203ENST00000478840 DNAH1Q9P2D7 4330 aa-0.75□□□□□ -2.53
UPF3B-203ENST00000478840 MADDQ8WXG6 1647 aa-0.76□□□□□ -2.53
UPF3B-203ENST00000478840 MMP24-AS1A0A0U1RRL7 71 aa-0.77□□□□□ -2.53
UPF3B-203ENST00000478840 TEX15Q9BXT5 2789 aa-0.79□□□□□ -2.54
UPF3B-203ENST00000478840 ACACBO00763 2458 aa-0.79□□□□□ -2.54
UPF3B-203ENST00000478840 KALRNO60229 2985 aa-0.79□□□□□ -2.54
UPF3B-203ENST00000478840 DNAH11Q96DT5 4516 aa-0.79□□□□□ -2.54
UPF3B-203ENST00000478840 DNAH5Q8TE73 4624 aa-0.8□□□□□ -2.54
UPF3B-203ENST00000478840 NMES1Q9C002 83 aa-0.8□□□□□ -2.54
UPF3B-203ENST00000478840 DNAH17Q9UFH2 4485 aa-0.8□□□□□ -2.54
UPF3B-203ENST00000478840 SRCAPQ6ZRS2 3230 aa-0.81□□□□□ -2.54
UPF3B-203ENST00000478840 SMG1Q96Q15 3661 aaKnown RBP-0.81□□□□□ -2.54
UPF3B-203ENST00000478840 SFTA3P0C7M3 94 aa-0.81□□□□□ -2.54
UPF3B-203ENST00000478840 CCDC168Q8NDH2 2452 aa-0.81□□□□□ -2.54
UPF3B-203ENST00000478840 TIAM1Q13009 1591 aa-0.82□□□□□ -2.54
UPF3B-203ENST00000478840 ITPR2Q14571 2701 aa-0.82□□□□□ -2.54
UPF3B-203ENST00000478840 ITPR1Q14643 2758 aa-0.82□□□□□ -2.54
UPF3B-203ENST00000478840 M0R1W7 72 aa-0.83□□□□□ -2.54
UPF3B-203ENST00000478840 TNP1P09430 55 aa-0.83□□□□□ -2.54
UPF3B-203ENST00000478840 ABCA6Q8N139 1617 aa-0.83□□□□□ -2.54
UPF3B-203ENST00000478840 A0A0C4DFX4 3053 aa-0.83□□□□□ -2.54
UPF3B-203ENST00000478840 RIF1Q5UIP0 2472 aaKnown RBP-0.84□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms