RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 LINC00483Q53H64 154 aa4.01□□□□□ -1.77
CSDE1-205ENST00000438362 LCA10Q71F78 164 aa4.01□□□□□ -1.77
CSDE1-205ENST00000438362 Q6ZR54 194 aa4.01□□□□□ -1.77
CSDE1-205ENST00000438362 AKAP9Q99996 3911 aa4□□□□□ -1.77
CSDE1-205ENST00000438362 NBPF19A0A087WUL8 3843 aa3.99□□□□□ -1.77
CSDE1-205ENST00000438362 Q5W150 140 aa3.99□□□□□ -1.77
CSDE1-205ENST00000438362 Q8N1X5 172 aa3.99□□□□□ -1.77
CSDE1-205ENST00000438362 SPINK7P58062 85 aa3.98□□□□□ -1.77
CSDE1-205ENST00000438362 TENM3Q9P273 2699 aa3.97□□□□□ -1.77
CSDE1-205ENST00000438362 C9orf92A6NGG3 77 aa3.97□□□□□ -1.77
CSDE1-205ENST00000438362 RBM12B-AS1Q9P1G2 102 aa3.97□□□□□ -1.77
CSDE1-205ENST00000438362 ZFHX3Q15911 3703 aa3.96□□□□□ -1.78
CSDE1-205ENST00000438362 A0A087X002 238 aa3.95□□□□□ -1.78
CSDE1-205ENST00000438362 SMR3BP02814 79 aaPredicted RBP3.95□□□□□ -1.78
CSDE1-205ENST00000438362 NOTCH2NLQ7Z3S9 236 aa3.95□□□□□ -1.78
CSDE1-205ENST00000438362 KRTAP13-1Q8IUC0 172 aa3.95□□□□□ -1.78
CSDE1-205ENST00000438362 Q6ZRN7 208 aaPredicted RBP3.95□□□□□ -1.78
CSDE1-205ENST00000438362 DMAC1Q96GE9 116 aa3.94□□□□□ -1.78
CSDE1-205ENST00000438362 TENM1Q9UKZ4 2725 aa3.94□□□□□ -1.78
CSDE1-205ENST00000438362 VWFP04275 2813 aa3.93□□□□□ -1.78
CSDE1-205ENST00000438362 PDZD2O15018 2839 aa3.91□□□□□ -1.78
CSDE1-205ENST00000438362 CUBNO60494 3623 aa3.91□□□□□ -1.78
CSDE1-205ENST00000438362 KRTAP10-2P60368 255 aa3.9□□□□□ -1.79
CSDE1-205ENST00000438362 PRAC1Q96KF2 57 aa3.9□□□□□ -1.79
CSDE1-205ENST00000438362 A8MU10 97 aa3.89□□□□□ -1.79
CSDE1-205ENST00000438362 KRTAP10-1P60331 282 aa3.88□□□□□ -1.79
CSDE1-205ENST00000438362 ASB16-AS1Q495Z4 193 aa3.88□□□□□ -1.79
CSDE1-205ENST00000438362 A0A1B0GU33 70 aa3.88□□□□□ -1.79
CSDE1-205ENST00000438362 DMBT1Q9UGM3 2413 aaPredicted RBP3.87□□□□□ -1.79
CSDE1-205ENST00000438362 TENM4Q6N022 2769 aa3.87□□□□□ -1.79
CSDE1-205ENST00000438362 LINC01554Q52M75 96 aa3.86□□□□□ -1.79
CSDE1-205ENST00000438362 A6NN06 94 aa3.85□□□□□ -1.79
CSDE1-205ENST00000438362 OTOGQ6ZRI0 2925 aa3.85□□□□□ -1.79
CSDE1-205ENST00000438362 SPATA8Q6RVD6 105 aa3.83□□□□□ -1.8
CSDE1-205ENST00000438362 SPINT4Q6UDR6 99 aa3.82□□□□□ -1.8
CSDE1-205ENST00000438362 A0A0D9SG42 100 aa3.82□□□□□ -1.8
CSDE1-205ENST00000438362 KRTAP13-2Q52LG2 175 aa3.82□□□□□ -1.8
CSDE1-205ENST00000438362 PKD1L1Q8TDX9 2849 aa3.82□□□□□ -1.8
CSDE1-205ENST00000438362 CSAG1Q6PB30 78 aa3.81□□□□□ -1.8
CSDE1-205ENST00000438362 FBN1P35555 2871 aaKnown RBP3.81□□□□□ -1.8
CSDE1-205ENST00000438362 CSMD2Q7Z408 3487 aa3.81□□□□□ -1.8
CSDE1-205ENST00000438362 ANK2Q01484 3957 aa3.81□□□□□ -1.8
CSDE1-205ENST00000438362 CRIPTQ9P021 101 aa3.8□□□□□ -1.8
CSDE1-205ENST00000438362 ZNF469Q96JG9 3925 aaPredicted RBP3.77□□□□□ -1.81
CSDE1-205ENST00000438362 LOC100996750A0A140TA64 210 aa3.76□□□□□ -1.81
CSDE1-205ENST00000438362 KRTAP4-6Q9BYQ5 205 aa3.76□□□□□ -1.81
CSDE1-205ENST00000438362 H1FX-AS1Q4G0G2 97 aa3.75□□□□□ -1.81
CSDE1-205ENST00000438362 VPS13CQ709C8 3753 aa3.75□□□□□ -1.81
CSDE1-205ENST00000438362 RPS29P62273 56 aaKnown RBP3.74□□□□□ -1.81
CSDE1-205ENST00000438362 XP32Q5T750 250 aa3.74□□□□□ -1.81
CSDE1-205ENST00000438362 COX6B2Q6YFQ2 88 aa3.74□□□□□ -1.81
CSDE1-205ENST00000438362 CMYA5Q8N3K9 4069 aa3.74□□□□□ -1.81
CSDE1-205ENST00000438362 ADM2Q7Z4H4 148 aa3.73□□□□□ -1.81
CSDE1-205ENST00000438362 TGP01266 2768 aa3.73□□□□□ -1.81
CSDE1-205ENST00000438362 ANK3Q12955 4377 aaKnown RBP3.73□□□□□ -1.81
CSDE1-205ENST00000438362 FLG2Q5D862 2391 aaPredicted RBP3.72□□□□□ -1.81
CSDE1-205ENST00000438362 S4R3F8 94 aa3.72□□□□□ -1.81
CSDE1-205ENST00000438362 TENM2Q9NT68 2774 aa3.71□□□□□ -1.82
CSDE1-205ENST00000438362 RPL37P61927 97 aaKnown RBP3.71□□□□□ -1.82
CSDE1-205ENST00000438362 TRRAPQ9Y4A5 3859 aa3.71□□□□□ -1.82
CSDE1-205ENST00000438362 Q6ZSA8 131 aa3.7□□□□□ -1.82
CSDE1-205ENST00000438362 DNHD1Q96M86 4753 aa3.7□□□□□ -1.82
CSDE1-205ENST00000438362 KRTAP1-4P0C5Y4 121 aa3.7□□□□□ -1.82
CSDE1-205ENST00000438362 ROMO1P60602 79 aa3.68□□□□□ -1.82
CSDE1-205ENST00000438362 KRTAP13-3Q3SY46 172 aa3.68□□□□□ -1.82
CSDE1-205ENST00000438362 KRTAP16-1A8MUX0 517 aa3.67□□□□□ -1.82
CSDE1-205ENST00000438362 SRRM2Q9UQ35 2752 aaKnown RBP3.66□□□□□ -1.82
CSDE1-205ENST00000438362 A8MUU9 505 aa3.66□□□□□ -1.82
CSDE1-205ENST00000438362 H3BS24 57 aa3.66□□□□□ -1.82
CSDE1-205ENST00000438362 Q5VSD8 79 aa3.65□□□□□ -1.82
CSDE1-205ENST00000438362 C20orf166-AS1Q96NR2 134 aa3.65□□□□□ -1.82
CSDE1-205ENST00000438362 KRTAP25-1Q3LHN0 102 aa3.64□□□□□ -1.83
CSDE1-205ENST00000438362 FBN3Q75N90 2809 aa3.61□□□□□ -1.83
CSDE1-205ENST00000438362 DNAH3Q8TD57 4116 aa3.6□□□□□ -1.83
CSDE1-205ENST00000438362 R4GN34 69 aa3.59□□□□□ -1.83
CSDE1-205ENST00000438362 H0YAA0 97 aa3.58□□□□□ -1.84
CSDE1-205ENST00000438362 KRTAP19-4Q3LI73 84 aa3.58□□□□□ -1.84
CSDE1-205ENST00000438362 CAMK2N1Q7Z7J9 78 aa3.57□□□□□ -1.84
CSDE1-205ENST00000438362 M0QZ58 72 aa3.55□□□□□ -1.84
CSDE1-205ENST00000438362 SEC61BP60468 96 aaKnown RBP3.55□□□□□ -1.84
CSDE1-205ENST00000438362 MEGF8Q7Z7M0 2845 aa3.54□□□□□ -1.84
CSDE1-205ENST00000438362 LYSTQ99698 3801 aa3.53□□□□□ -1.84
CSDE1-205ENST00000438362 LUZP6Q538Z0 58 aa3.53□□□□□ -1.84
CSDE1-205ENST00000438362 KRTAP4-8Q9BYQ9 185 aa3.51□□□□□ -1.85
CSDE1-205ENST00000438362 KRTAP21-3Q3LHN1 58 aa3.5□□□□□ -1.85
CSDE1-205ENST00000438362 COL7A1Q02388 2944 aa3.48□□□□□ -1.85
CSDE1-205ENST00000438362 HUWE1Q7Z6Z7 4374 aaKnown RBP3.45□□□□□ -1.86
CSDE1-205ENST00000438362 DNAH7Q8WXX0 4024 aa3.44□□□□□ -1.86
CSDE1-205ENST00000438362 KRTAP3-1Q9BYR8 98 aa3.44□□□□□ -1.86
CSDE1-205ENST00000438362 C10orf95Q9H7T3 257 aa3.43□□□□□ -1.86
CSDE1-205ENST00000438362 P0C880 135 aa3.43□□□□□ -1.86
CSDE1-205ENST00000438362 NDUFAF8A1L188 74 aa3.42□□□□□ -1.86
CSDE1-205ENST00000438362 CSMD3Q7Z407 3707 aa3.42□□□□□ -1.86
CSDE1-205ENST00000438362 A0A1B0GVY2 172 aa3.41□□□□□ -1.86
CSDE1-205ENST00000438362 KRTAP10-8P60410 259 aa3.4□□□□□ -1.86
CSDE1-205ENST00000438362 KRTAP4-12Q9BQ66 201 aa3.4□□□□□ -1.87
CSDE1-205ENST00000438362 M0R2T5 61 aa3.4□□□□□ -1.87
CSDE1-205ENST00000438362 LCE3BQ5TA77 95 aa3.39□□□□□ -1.87
CSDE1-205ENST00000438362 DNAH1Q9P2D7 4330 aa3.38□□□□□ -1.87
CSDE1-205ENST00000438362 PRKDCP78527 4128 aaKnown RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms