RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.86□□□□□ -1.31
HMGCS1-202ENST00000433297 KRTAP24-1Q3LI83 254 aa6.85□□□□□ -1.31
HMGCS1-202ENST00000433297 CIRBP-AS1Q8TBR5 109 aa6.84□□□□□ -1.31
HMGCS1-202ENST00000433297 WWC2-AS2Q96NR7 200 aa6.84□□□□□ -1.31
HMGCS1-202ENST00000433297 DNAH9Q9NYC9 4486 aa6.83□□□□□ -1.32
HMGCS1-202ENST00000433297 C4orf48Q5BLP8 95 aa6.83□□□□□ -1.32
HMGCS1-202ENST00000433297 MGAM2Q2M2H8 2515 aa6.82□□□□□ -1.32
HMGCS1-202ENST00000433297 LINC01554Q52M75 96 aa6.81□□□□□ -1.32
HMGCS1-202ENST00000433297 PSORS1C2Q9UIG4 136 aa6.81□□□□□ -1.32
HMGCS1-202ENST00000433297 ZNF706Q9Y5V0 76 aaPredicted RBP6.81□□□□□ -1.32
HMGCS1-202ENST00000433297 MIR22HGQ0VDD5 57 aa6.8□□□□□ -1.32
HMGCS1-202ENST00000433297 PLA2G1BP04054 148 aaKnown RBP6.79□□□□□ -1.32
HMGCS1-202ENST00000433297 LINC00483Q53H64 154 aa6.78□□□□□ -1.32
HMGCS1-202ENST00000433297 SPACA4Q8TDM5 124 aa6.77□□□□□ -1.33
HMGCS1-202ENST00000433297 UQCR11O14957 56 aa6.76□□□□□ -1.33
HMGCS1-202ENST00000433297 DMAC1Q96GE9 116 aa6.76□□□□□ -1.33
HMGCS1-202ENST00000433297 APLNQ9ULZ1 77 aa6.76□□□□□ -1.33
HMGCS1-202ENST00000433297 HUWE1Q7Z6Z7 4374 aaKnown RBP6.76□□□□□ -1.33
HMGCS1-202ENST00000433297 KRTAP13-3Q3SY46 172 aa6.75□□□□□ -1.33
HMGCS1-202ENST00000433297 NBDYA0A0U1RRE5 68 aa6.75□□□□□ -1.33
HMGCS1-202ENST00000433297 SPATA8Q6RVD6 105 aa6.75□□□□□ -1.33
HMGCS1-202ENST00000433297 ZNF861PO60384 105 aa6.74□□□□□ -1.33
HMGCS1-202ENST00000433297 CSAG1Q6PB30 78 aa6.74□□□□□ -1.33
HMGCS1-202ENST00000433297 IGKV2D-30A0A075B6S6 120 aa6.73□□□□□ -1.33
HMGCS1-202ENST00000433297 IGLV5-52A0A0A0MRZ9 124 aa6.73□□□□□ -1.33
HMGCS1-202ENST00000433297 IGKV2-30P06310 120 aa6.73□□□□□ -1.33
HMGCS1-202ENST00000433297 RTL8CO15255 209 aa6.73□□□□□ -1.33
HMGCS1-202ENST00000433297 SPINK1P00995 79 aa6.73□□□□□ -1.33
HMGCS1-202ENST00000433297 H3BS24 57 aa6.72□□□□□ -1.33
HMGCS1-202ENST00000433297 CMYA5Q8N3K9 4069 aa6.71□□□□□ -1.34
HMGCS1-202ENST00000433297 FRAS1Q86XX4 4008 aa6.7□□□□□ -1.34
HMGCS1-202ENST00000433297 FAM229AH3BQW9 127 aa6.7□□□□□ -1.34
HMGCS1-202ENST00000433297 DNAH7Q8WXX0 4024 aa6.69□□□□□ -1.34
HMGCS1-202ENST00000433297 Q6ZRN7 208 aaPredicted RBP6.67□□□□□ -1.34
HMGCS1-202ENST00000433297 A0A087WTM6 91 aa6.66□□□□□ -1.34
HMGCS1-202ENST00000433297 ALMS1Q8TCU4 4167 aa6.63□□□□□ -1.35
HMGCS1-202ENST00000433297 TGP01266 2768 aa6.63□□□□□ -1.35
HMGCS1-202ENST00000433297 IGLV7-43P04211 117 aa6.62□□□□□ -1.35
HMGCS1-202ENST00000433297 DNAH8Q96JB1 4490 aa6.62□□□□□ -1.35
HMGCS1-202ENST00000433297 DNAH3Q8TD57 4116 aa6.61□□□□□ -1.35
HMGCS1-202ENST00000433297 Q8N1X5 172 aa6.59□□□□□ -1.35
HMGCS1-202ENST00000433297 SSBP3-AS1Q7Z2R9 100 aa6.58□□□□□ -1.36
HMGCS1-202ENST00000433297 PLECQ15149 4684 aaKnown RBP6.57□□□□□ -1.36
HMGCS1-202ENST00000433297 FBN3Q75N90 2809 aa6.55□□□□□ -1.36
HMGCS1-202ENST00000433297 MEGF8Q7Z7M0 2845 aa6.54□□□□□ -1.36
HMGCS1-202ENST00000433297 FLG2Q5D862 2391 aaPredicted RBP6.54□□□□□ -1.36
HMGCS1-202ENST00000433297 NUPR2A6NF83 97 aa6.53□□□□□ -1.36
HMGCS1-202ENST00000433297 C1orf134Q5TEV5 83 aa6.53□□□□□ -1.36
HMGCS1-202ENST00000433297 KRTAP16-1A8MUX0 517 aa6.5□□□□□ -1.37
HMGCS1-202ENST00000433297 DNAH17Q9UFH2 4485 aa6.49□□□□□ -1.37
HMGCS1-202ENST00000433297 CRIPTQ9P021 101 aa6.49□□□□□ -1.37
HMGCS1-202ENST00000433297 KRTAP13-2Q52LG2 175 aa6.49□□□□□ -1.37
HMGCS1-202ENST00000433297 KRTAP21-3Q3LHN1 58 aa6.47□□□□□ -1.37
HMGCS1-202ENST00000433297 Q6ZSA8 131 aa6.46□□□□□ -1.38
HMGCS1-202ENST00000433297 HECTD4Q9Y4D8 3996 aa6.45□□□□□ -1.38
HMGCS1-202ENST00000433297 H0YAA0 97 aa6.45□□□□□ -1.38
HMGCS1-202ENST00000433297 TYMSOSQ8TAI1 123 aa6.44□□□□□ -1.38
HMGCS1-202ENST00000433297 LY6G6CO95867 125 aa6.43□□□□□ -1.38
HMGCS1-202ENST00000433297 LINC00304Q8N9R0 145 aa6.43□□□□□ -1.38
HMGCS1-202ENST00000433297 KMT2AQ03164 3969 aa6.42□□□□□ -1.38
HMGCS1-202ENST00000433297 KRTAP25-1Q3LHN0 102 aa6.42□□□□□ -1.38
HMGCS1-202ENST00000433297 A8MUU9 505 aa6.42□□□□□ -1.38
HMGCS1-202ENST00000433297 A0A1B0GU33 70 aa6.41□□□□□ -1.38
HMGCS1-202ENST00000433297 STARD9Q9P2P6 4700 aa6.4□□□□□ -1.39
HMGCS1-202ENST00000433297 ROMO1P60602 79 aa6.38□□□□□ -1.39
HMGCS1-202ENST00000433297 KRTAP10-2P60368 255 aa6.38□□□□□ -1.39
HMGCS1-202ENST00000433297 VPS13DQ5THJ4 4388 aa6.37□□□□□ -1.39
HMGCS1-202ENST00000433297 DNAH2Q9P225 4427 aa6.37□□□□□ -1.39
HMGCS1-202ENST00000433297 DYNC2H1Q8NCM8 4307 aaKnown RBP6.34□□□□□ -1.39
HMGCS1-202ENST00000433297 DNAH6Q9C0G6 4158 aa6.33□□□□□ -1.4
HMGCS1-202ENST00000433297 C9orf92A6NGG3 77 aa6.33□□□□□ -1.4
HMGCS1-202ENST00000433297 H1FX-AS1Q4G0G2 97 aa6.32□□□□□ -1.4
HMGCS1-202ENST00000433297 K7ERS5 55 aa6.31□□□□□ -1.4
HMGCS1-202ENST00000433297 KRTAP1-4P0C5Y4 121 aa6.3□□□□□ -1.4
HMGCS1-202ENST00000433297 DNAH11Q96DT5 4516 aa6.3□□□□□ -1.4
HMGCS1-202ENST00000433297 DMBT1Q9UGM3 2413 aaPredicted RBP6.29□□□□□ -1.4
HMGCS1-202ENST00000433297 KRTAP10-1P60331 282 aa6.28□□□□□ -1.4
HMGCS1-202ENST00000433297 LRP1BQ9NZR2 4599 aa6.27□□□□□ -1.41
HMGCS1-202ENST00000433297 KRTAP3-1Q9BYR8 98 aa6.25□□□□□ -1.41
HMGCS1-202ENST00000433297 COX6B2Q6YFQ2 88 aa6.22□□□□□ -1.41
HMGCS1-202ENST00000433297 A0A0D9SG42 100 aa6.21□□□□□ -1.42
HMGCS1-202ENST00000433297 P0C880 135 aa6.21□□□□□ -1.42
HMGCS1-202ENST00000433297 SPINT4Q6UDR6 99 aa6.21□□□□□ -1.42
HMGCS1-202ENST00000433297 DNAH5Q8TE73 4624 aa6.19□□□□□ -1.42
HMGCS1-202ENST00000433297 PRKDCP78527 4128 aaKnown RBP6.17□□□□□ -1.42
HMGCS1-202ENST00000433297 VPS13BQ7Z7G8 4022 aa6.15□□□□□ -1.42
HMGCS1-202ENST00000433297 SMR3BP02814 79 aaPredicted RBP6.13□□□□□ -1.43
HMGCS1-202ENST00000433297 C10orf95Q9H7T3 257 aa6.11□□□□□ -1.43
HMGCS1-202ENST00000433297 RPL37P61927 97 aaKnown RBP6.11□□□□□ -1.43
HMGCS1-202ENST00000433297 C20orf166-AS1Q96NR2 134 aa6.1□□□□□ -1.43
HMGCS1-202ENST00000433297 TPRXLQ17RH7 258 aa6.08□□□□□ -1.44
HMGCS1-202ENST00000433297 FAT2Q9NYQ8 4349 aa6.06□□□□□ -1.44
HMGCS1-202ENST00000433297 KRTAP13-4Q3LI77 160 aa6.05□□□□□ -1.44
HMGCS1-202ENST00000433297 NDUFAF8A1L188 74 aa6.04□□□□□ -1.44
HMGCS1-202ENST00000433297 RPS29P62273 56 aaKnown RBP6.01□□□□□ -1.45
HMGCS1-202ENST00000433297 KRTAP10-6P60371 365 aaPredicted RBP6□□□□□ -1.45
HMGCS1-202ENST00000433297 HYDINQ4G0P3 5121 aa6□□□□□ -1.45
HMGCS1-202ENST00000433297 PKD1P98161 4303 aa5.99□□□□□ -1.45
HMGCS1-202ENST00000433297 KRTAP3-3Q9BYR6 98 aa5.94□□□□□ -1.46
HMGCS1-202ENST00000433297 S4R3F8 94 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms