RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 CSMD3Q7Z407 3707 aa0.76□□□□□ -2.29
CLK1-204ENST00000432425 PKD1L2Q7Z442 2459 aa0.76□□□□□ -2.29
CLK1-204ENST00000432425 MKI67P46013 3256 aaKnown RBP0.76□□□□□ -2.29
CLK1-204ENST00000432425 U3KQA8 63 aa0.75□□□□□ -2.29
CLK1-204ENST00000432425 FAM186AA6NE01 2351 aa0.75□□□□□ -2.29
CLK1-204ENST00000432425 WNK1Q9H4A3 2382 aa0.75□□□□□ -2.29
CLK1-204ENST00000432425 MGAQ8IWI9 3026 aa0.75□□□□□ -2.29
CLK1-204ENST00000432425 WDR87Q6ZQQ6 2873 aa0.75□□□□□ -2.29
CLK1-204ENST00000432425 RANBP2P49792 3224 aaKnown RBP0.75□□□□□ -2.29
CLK1-204ENST00000432425 SRRM2Q9UQ35 2752 aaKnown RBP0.75□□□□□ -2.29
CLK1-204ENST00000432425 BRCA2P51587 3418 aa0.75□□□□□ -2.29
CLK1-204ENST00000432425 CEP250Q9BV73 2442 aa0.74□□□□□ -2.29
CLK1-204ENST00000432425 VCANP13611 3396 aa0.74□□□□□ -2.29
CLK1-204ENST00000432425 LAMA3Q16787 3333 aa0.74□□□□□ -2.29
CLK1-204ENST00000432425 APC2O95996 2303 aa0.73□□□□□ -2.29
CLK1-204ENST00000432425 OTOGQ6ZRI0 2925 aa0.73□□□□□ -2.29
CLK1-204ENST00000432425 HTTP42858 3142 aa0.73□□□□□ -2.29
CLK1-204ENST00000432425 TENM3Q9P273 2699 aa0.73□□□□□ -2.29
CLK1-204ENST00000432425 CREBBPQ92793 2442 aa0.73□□□□□ -2.29
CLK1-204ENST00000432425 CFAP54Q96N23 3096 aa0.73□□□□□ -2.29
CLK1-204ENST00000432425 SPEGQ15772 3267 aa0.73□□□□□ -2.29
CLK1-204ENST00000432425 NOP10Q9NPE3 64 aaKnown RBP0.73□□□□□ -2.29
CLK1-204ENST00000432425 SPTA1P02549 2419 aa0.73□□□□□ -2.29
CLK1-204ENST00000432425 ATRQ13535 2644 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 VPS13AQ96RL7 3174 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 NAV2Q8IVL1 2488 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 CCDC168Q8NDH2 2452 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 COL6A5A8TX70 2615 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 DNAH11Q96DT5 4516 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 DCHS1Q96JQ0 3298 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 BSNQ9UPA5 3926 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 NBASA2RRP1 2371 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 FRYLO94915 3013 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 WDFY3Q8IZQ1 3526 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 LAMA2P24043 3122 aaKnown RBP0.72□□□□□ -2.29
CLK1-204ENST00000432425 TENM2Q9NT68 2774 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 FREM2Q5SZK8 3169 aa0.72□□□□□ -2.29
CLK1-204ENST00000432425 VWFP04275 2813 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 TNRC18O15417 2968 aaPredicted RBP0.71□□□□□ -2.3
CLK1-204ENST00000432425 UBR5O95071 2799 aaPredicted RBP0.71□□□□□ -2.3
CLK1-204ENST00000432425 NBEAQ8NFP9 2946 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 TRIOO75962 3097 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 NOTCH1P46531 2555 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 VPS13DQ5THJ4 4388 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 ZZEF1O43149 2961 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 CDH23Q9H251 3354 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 FBN2P35556 2912 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 FRYQ5TBA9 3013 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 CHD6Q8TD26 2715 aa0.71□□□□□ -2.3
CLK1-204ENST00000432425 LAMA1P25391 3075 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 CSMD1Q96PZ7 3565 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 HECTD1Q9ULT8 2610 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 SPTBN4Q9H254 2564 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 PRUNE2Q8WUY3 3088 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 DMBT1Q9UGM3 2413 aaPredicted RBP0.7□□□□□ -2.3
CLK1-204ENST00000432425 HTN1P15515 57 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 RHPN1-AS1Q9BWJ2 59 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 WDFY4Q6ZS81 3184 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 CELSR3Q9NYQ7 3312 aa0.7□□□□□ -2.3
CLK1-204ENST00000432425 SPTBN5Q9NRC6 3674 aaKnown RBP0.7□□□□□ -2.3
CLK1-204ENST00000432425 SPENQ96T58 3664 aaKnown RBP0.69□□□□□ -2.3
CLK1-204ENST00000432425 KALRNO60229 2985 aa0.69□□□□□ -2.3
CLK1-204ENST00000432425 DMDP11532 3685 aa0.69□□□□□ -2.3
CLK1-204ENST00000432425 ZFHX4Q86UP3 3567 aa0.69□□□□□ -2.3
CLK1-204ENST00000432425 DMXL2Q8TDJ6 3036 aa0.69□□□□□ -2.3
CLK1-204ENST00000432425 LYSTQ99698 3801 aa0.68□□□□□ -2.3
CLK1-204ENST00000432425 DEFB136Q30KP8 78 aa0.68□□□□□ -2.3
CLK1-204ENST00000432425 DEFB135Q30KP9 77 aa0.68□□□□□ -2.3
CLK1-204ENST00000432425 PDZD2O15018 2839 aa0.68□□□□□ -2.3
CLK1-204ENST00000432425 ANK2Q01484 3957 aa0.68□□□□□ -2.3
CLK1-204ENST00000432425 NBPF19A0A087WUL8 3843 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 SETD2Q9BYW2 2564 aaPredicted RBP0.67□□□□□ -2.3
CLK1-204ENST00000432425 MYCBP2O75592 4640 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 RELNP78509 3460 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 PIEZO1Q92508 2521 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 SPG11Q96JI7 2443 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 MYO15AQ9UKN7 3530 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 PTPN13Q12923 2485 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 DCHS2Q6V1P9 2916 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 BDP1A6H8Y1 2624 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 CRYBG3Q68DQ2 2970 aa0.67□□□□□ -2.3
CLK1-204ENST00000432425 ZNF469Q96JG9 3925 aaPredicted RBP0.67□□□□□ -2.3
CLK1-204ENST00000432425 CHD8Q9HCK8 2581 aa0.66□□□□□ -2.3
CLK1-204ENST00000432425 MAP1BP46821 2468 aaKnown RBP0.66□□□□□ -2.3
CLK1-204ENST00000432425 SPTAN1Q13813 2472 aaKnown RBP0.66□□□□□ -2.3
CLK1-204ENST00000432425 A0A096LPF7 62 aa0.66□□□□□ -2.3
CLK1-204ENST00000432425 H3BUX3 64 aa0.66□□□□□ -2.3
CLK1-204ENST00000432425 LOC400499M0QZD8 3231 aa0.66□□□□□ -2.3
CLK1-204ENST00000432425 HRNRQ86YZ3 2850 aaPredicted RBP0.66□□□□□ -2.3
CLK1-204ENST00000432425 TENM4Q6N022 2769 aa0.66□□□□□ -2.3
CLK1-204ENST00000432425 TACC2O95359 2948 aa0.66□□□□□ -2.3
CLK1-204ENST00000432425 SMG1Q96Q15 3661 aaKnown RBP0.65□□□□□ -2.3
CLK1-204ENST00000432425 FSIP2Q5CZC0 6907 aa0.65□□□□□ -2.3
CLK1-204ENST00000432425 NCOR2Q9Y618 2525 aa0.65□□□□□ -2.3
CLK1-204ENST00000432425 BOD1L1Q8NFC6 3051 aa0.65□□□□□ -2.3
CLK1-204ENST00000432425 DMXL1Q9Y485 3027 aa0.65□□□□□ -2.31
CLK1-204ENST00000432425 EYSQ5T1H1 3165 aa0.65□□□□□ -2.31
CLK1-204ENST00000432425 ITPR1Q14643 2758 aa0.65□□□□□ -2.31
CLK1-204ENST00000432425 FAT2Q9NYQ8 4349 aa0.64□□□□□ -2.31
CLK1-204ENST00000432425 M0QZ58 72 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms