RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 AEBP2Q6ZN18 517 aaPredicted RBP20.21■□□□□ 0.83
CLK1-204ENST00000432425 CHIC1Q5VXU3 224 aa19.64■□□□□ 0.73
CLK1-204ENST00000432425 SENP3Q9H4L4 574 aaPredicted RBP17.24■□□□□ 0.35
CLK1-204ENST00000432425 PHF23Q9BUL5 403 aaPredicted RBP17.21■□□□□ 0.35
CLK1-204ENST00000432425 POTEDQ86YR6 584 aa16.61■□□□□ 0.25
CLK1-204ENST00000432425 FOXD1Q16676 465 aa15.98■□□□□ 0.15
CLK1-204ENST00000432425 PLPPR3Q6T4P5 718 aa15.91■□□□□ 0.14
CLK1-204ENST00000432425 ADRA2BP18089 450 aa15.24■□□□□ 0.03
CLK1-204ENST00000432425 PPP6R1Q9UPN7 881 aa15.23■□□□□ 0.03
CLK1-204ENST00000432425 PIAS4Q8N2W9 510 aaPredicted RBP15.07■□□□□ 0
CLK1-204ENST00000432425 MSH5O43196 834 aa14.84□□□□□ -0.03
CLK1-204ENST00000432425 SCAF1Q9H7N4 1312 aaKnown RBP14□□□□□ -0.17
CLK1-204ENST00000432425 PPP4R3CPQ6ZMV5 832 aa13.98□□□□□ -0.17
CLK1-204ENST00000432425 MAPK8IP2Q13387 824 aaPredicted RBP13.85□□□□□ -0.19
CLK1-204ENST00000432425 DMRT2Q9Y5R5 561 aa13.72□□□□□ -0.21
CLK1-204ENST00000432425 CNKSR2Q8WXI2 1034 aa13.64□□□□□ -0.23
CLK1-204ENST00000432425 NCBP3Q53F19 620 aaKnown RBP13.62□□□□□ -0.23
CLK1-204ENST00000432425 KCNA4P22459 653 aa13.47□□□□□ -0.25
CLK1-204ENST00000432425 RNF216Q9NWF9 866 aaPredicted RBP13.4□□□□□ -0.26
CLK1-204ENST00000432425 HOXD11P31277 338 aaPredicted RBP13.37□□□□□ -0.27
CLK1-204ENST00000432425 NPM3O75607 178 aaKnown RBP13.36□□□□□ -0.27
CLK1-204ENST00000432425 DCAF8L1A6NGE4 600 aa13.19□□□□□ -0.3
CLK1-204ENST00000432425 DNAJC5BQ9UF47 199 aa12.97□□□□□ -0.33
CLK1-204ENST00000432425 CACNB1Q02641 598 aaPredicted RBP12.89□□□□□ -0.35
CLK1-204ENST00000432425 SLC4A1APQ9BWU0 796 aaKnown RBP12.84□□□□□ -0.35
CLK1-204ENST00000432425 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.78□□□□□ -0.362e-8■■□□□ 12.7
CLK1-204ENST00000432425 RNF39Q9H2S5 420 aa12.67□□□□□ -0.38
CLK1-204ENST00000432425 POTEHQ6S545 545 aa12.64□□□□□ -0.39
CLK1-204ENST00000432425 SLC4A2P04920 1241 aa12.63□□□□□ -0.39
CLK1-204ENST00000432425 C1QBPQ07021 282 aaKnown RBP12.53□□□□□ -0.4
CLK1-204ENST00000432425 U3KPZ7 1027 aaPredicted RBP12.52□□□□□ -0.4
CLK1-204ENST00000432425 FOXD4L1Q9NU39 408 aa12.48□□□□□ -0.41
CLK1-204ENST00000432425 MYCNP04198 464 aaPredicted RBP12.38□□□□□ -0.43
CLK1-204ENST00000432425 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.37□□□□□ -0.43
CLK1-204ENST00000432425 ZBTB22O15209 634 aa12.37□□□□□ -0.43
CLK1-204ENST00000432425 HNRNPUL2Q1KMD3 747 aaKnown RBP12.37□□□□□ -0.43
CLK1-204ENST00000432425 APLP2Q06481 763 aa12.3□□□□□ -0.44
CLK1-204ENST00000432425 SAMD1Q6SPF0 538 aaPredicted RBP12.3□□□□□ -0.44
CLK1-204ENST00000432425 EHMT2Q96KQ7 1210 aa12.3□□□□□ -0.44
CLK1-204ENST00000432425 CAPN15O75808 1086 aa12.22□□□□□ -0.45
CLK1-204ENST00000432425 SPINK5Q9NQ38 1064 aaPredicted RBP12.21□□□□□ -0.45
CLK1-204ENST00000432425 CSRNP3Q8WYN3 585 aa12.19□□□□□ -0.46
CLK1-204ENST00000432425 TRHP20396 242 aaPredicted RBP12.12□□□□□ -0.47
CLK1-204ENST00000432425 ZNF219Q9P2Y4 722 aaPredicted RBP12.12□□□□□ -0.47
CLK1-204ENST00000432425 ATXN8OSP0DMR3 200 aa12.05□□□□□ -0.48
CLK1-204ENST00000432425 ATF5Q9Y2D1 282 aaPredicted RBP12.01□□□□□ -0.49
CLK1-204ENST00000432425 DSG3P32926 999 aa12□□□□□ -0.49
CLK1-204ENST00000432425 ABCB7O75027 752 aa11.96□□□□□ -0.5
CLK1-204ENST00000432425 POLA2Q14181 598 aa11.86□□□□□ -0.51
CLK1-204ENST00000432425 ZBTB12Q9Y330 459 aaPredicted RBP11.7□□□□□ -0.54
CLK1-204ENST00000432425 FBLN2P98095 1184 aa11.6□□□□□ -0.55
CLK1-204ENST00000432425 RBM42Q9BTD8 480 aaKnown RBP11.49□□□□□ -0.57
CLK1-204ENST00000432425 MKRN4PQ13434 485 aaPredicted RBP11.48□□□□□ -0.57
CLK1-204ENST00000432425 OSCARQ8IYS5 282 aa11.48□□□□□ -0.57
CLK1-204ENST00000432425 SPDYE2BA6NHP3 402 aa11.35□□□□□ -0.59
CLK1-204ENST00000432425 SPDYE6P0CI01 402 aa11.35□□□□□ -0.59
CLK1-204ENST00000432425 SPDYE2Q495Y8 402 aa11.35□□□□□ -0.59
CLK1-204ENST00000432425 AKT1S1Q96B36 256 aa11.3□□□□□ -0.6
CLK1-204ENST00000432425 ZNF692Q9BU19 519 aaPredicted RBP11.29□□□□□ -0.6
CLK1-204ENST00000432425 SSUH2Q9Y2M2 353 aa11.21□□□□□ -0.61
CLK1-204ENST00000432425 SPDYE4A6NLX3 237 aa11.2□□□□□ -0.62
CLK1-204ENST00000432425 PLSCR2Q9NRY7 297 aa11.2□□□□□ -0.62
CLK1-204ENST00000432425 REM2Q8IYK8 340 aaPredicted RBP11.17□□□□□ -0.62
CLK1-204ENST00000432425 PABPN1Q86U42 306 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLK1-204ENST00000432425 FKBP8Q14318 412 aa11.08□□□□□ -0.64
CLK1-204ENST00000432425 SPDYE1Q8NFV5 336 aaPredicted RBP11.06□□□□□ -0.64
CLK1-204ENST00000432425 PITPNM1O00562 1244 aa11.05□□□□□ -0.64
CLK1-204ENST00000432425 CHRDL2Q6WN34 429 aa11.04□□□□□ -0.64
CLK1-204ENST00000432425 CLEC11AQ9Y240 323 aa11.03□□□□□ -0.64
CLK1-204ENST00000432425 PROM2Q8N271 834 aa10.95□□□□□ -0.66
CLK1-204ENST00000432425 SP7Q8TDD2 431 aaPredicted RBP10.95□□□□□ -0.66
CLK1-204ENST00000432425 STAG3Q9UJ98 1225 aa10.94□□□□□ -0.66
CLK1-204ENST00000432425 PRR29P0C7W0 189 aa10.9□□□□□ -0.66
CLK1-204ENST00000432425 FXR2P51116 673 aaKnown RBP eCLIP10.86□□□□□ -0.67
CLK1-204ENST00000432425 PIP4P2Q8N4L2 257 aa10.86□□□□□ -0.67
CLK1-204ENST00000432425 PRKAR2AP13861 404 aaKnown RBP10.79□□□□□ -0.68
CLK1-204ENST00000432425 FBXO3Q9UK99 471 aa10.75□□□□□ -0.69
CLK1-204ENST00000432425 CHADLQ6NUI6 762 aa10.74□□□□□ -0.69
CLK1-204ENST00000432425 CREBZFQ9NS37 354 aa10.69□□□□□ -0.7
CLK1-204ENST00000432425 PLEKHG5O94827 1062 aa10.66□□□□□ -0.7
CLK1-204ENST00000432425 MIER1Q8N108 512 aa10.65□□□□□ -0.7
CLK1-204ENST00000432425 PLCD3Q8N3E9 789 aa10.63□□□□□ -0.71
CLK1-204ENST00000432425 FARP1Q9Y4F1 1045 aaPredicted RBP10.63□□□□□ -0.71
CLK1-204ENST00000432425 HAX1O00165 279 aa10.58□□□□□ -0.72
CLK1-204ENST00000432425 VASPP50552 380 aaPredicted RBP10.57□□□□□ -0.72
CLK1-204ENST00000432425 NPM1P06748 294 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLK1-204ENST00000432425 ZBTB47Q9UFB7 747 aaPredicted RBP10.54□□□□□ -0.72
CLK1-204ENST00000432425 MNX1P50219 401 aaPredicted RBP10.53□□□□□ -0.72
CLK1-204ENST00000432425 C19orf67A6NJJ6 358 aa10.5□□□□□ -0.73
CLK1-204ENST00000432425 CD44P16070 742 aaKnown RBP10.47□□□□□ -0.73
CLK1-204ENST00000432425 KLHL34Q8N239 644 aa10.47□□□□□ -0.73
CLK1-204ENST00000432425 PAK3O75914 559 aaPredicted RBP10.44□□□□□ -0.74
CLK1-204ENST00000432425 EVX2Q03828 476 aa10.41□□□□□ -0.74
CLK1-204ENST00000432425 ZRANB1Q9UGI0 708 aa10.4□□□□□ -0.74
CLK1-204ENST00000432425 IFNLR1Q8IU57 520 aaPredicted RBP10.39□□□□□ -0.75
CLK1-204ENST00000432425 TSPYL2Q9H2G4 693 aaPredicted RBP10.36□□□□□ -0.75
CLK1-204ENST00000432425 NUBP1P53384 320 aa10.35□□□□□ -0.75
CLK1-204ENST00000432425 RASEFQ8IZ41 740 aa10.35□□□□□ -0.75
CLK1-204ENST00000432425 SPOCK2Q92563 424 aa10.34□□□□□ -0.75
CLK1-204ENST00000432425 FAM212AQ96EL1 285 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 162.3 ms