RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SIGMAR1Q99720 223 aa5.75□□□□□ -1.49
CD44-207ENST00000425428 IGKV4-1P06312 121 aa5.75□□□□□ -1.49
CD44-207ENST00000425428 RETNLBQ9BQ08 111 aa5.75□□□□□ -1.49
CD44-207ENST00000425428 C1orf195Q5TG92 126 aa5.74□□□□□ -1.49
CD44-207ENST00000425428 BPY2O14599 106 aa5.73□□□□□ -1.49
CD44-207ENST00000425428 IGLV7-46A0A075B6I9 117 aa5.72□□□□□ -1.49
CD44-207ENST00000425428 KRTAP4-12Q9BQ66 201 aa5.72□□□□□ -1.49
CD44-207ENST00000425428 LINC00846Q9NV44 126 aa5.72□□□□□ -1.49
CD44-207ENST00000425428 Q6ZVQ6 151 aa5.72□□□□□ -1.49
CD44-207ENST00000425428 PCLOQ9Y6V0 5065 aa5.71□□□□□ -1.49
CD44-207ENST00000425428 DEFB116Q30KQ4 102 aa5.7□□□□□ -1.5
CD44-207ENST00000425428 LINC00472Q9H8W2 130 aa5.7□□□□□ -1.5
CD44-207ENST00000425428 ATP5EP2Q5VTU8 51 aa5.67□□□□□ -1.5
CD44-207ENST00000425428 Q96NJ1 140 aa5.67□□□□□ -1.5
CD44-207ENST00000425428 A8MWP4 228 aa5.67□□□□□ -1.5
CD44-207ENST00000425428 IGHV6-1A0A0B4J1U7 121 aa5.66□□□□□ -1.5
CD44-207ENST00000425428 CXCL6P80162 114 aa5.66□□□□□ -1.5
CD44-207ENST00000425428 LINC00643Q86TS7 51 aa5.66□□□□□ -1.5
CD44-207ENST00000425428 A0A1B0GVX0 72 aa5.65□□□□□ -1.5
CD44-207ENST00000425428 C8orf87E5RJ46 101 aa5.65□□□□□ -1.5
CD44-207ENST00000425428 CDIP1Q9H305 208 aa5.65□□□□□ -1.5
CD44-207ENST00000425428 LINC00313P59037 77 aa5.65□□□□□ -1.51
CD44-207ENST00000425428 KRTAP4-7Q9BYR0 210 aa5.65□□□□□ -1.51
CD44-207ENST00000425428 TPRXLQ17RH7 258 aa5.64□□□□□ -1.51
CD44-207ENST00000425428 C9orf92A6NGG3 77 aa5.62□□□□□ -1.51
CD44-207ENST00000425428 PRR15Q8IV56 129 aa5.62□□□□□ -1.51
CD44-207ENST00000425428 IGKV3D-7A0A0C4DH55 119 aa5.61□□□□□ -1.51
CD44-207ENST00000425428 HIST1H4AP62805 103 aaKnown RBP5.61□□□□□ -1.51
CD44-207ENST00000425428 DSCR10P59022 87 aa5.6□□□□□ -1.51
CD44-207ENST00000425428 K7EQZ3 153 aa5.6□□□□□ -1.51
CD44-207ENST00000425428 KRTAP13-3Q3SY46 172 aa5.59□□□□□ -1.51
CD44-207ENST00000425428 C8orf17Q9NRJ1 99 aa5.58□□□□□ -1.52
CD44-207ENST00000425428 hDV103S1A0JD37 113 aa5.57□□□□□ -1.52
CD44-207ENST00000425428 Q8N9L7 120 aa5.57□□□□□ -1.52
CD44-207ENST00000425428 CASC2Q6XLA1 102 aa5.56□□□□□ -1.52
CD44-207ENST00000425428 HCG22E2RYF7 251 aa5.55□□□□□ -1.52
CD44-207ENST00000425428 NDUFS5O43920 106 aa5.55□□□□□ -1.52
CD44-207ENST00000425428 TMEM254Q8TBM7 123 aa5.55□□□□□ -1.52
CD44-207ENST00000425428 WFDC13Q8IUB5 93 aa5.54□□□□□ -1.52
CD44-207ENST00000425428 ATP11AUNQ6ZP68 121 aa5.53□□□□□ -1.52
CD44-207ENST00000425428 MRPL34Q9BQ48 92 aaKnown RBP5.53□□□□□ -1.52
CD44-207ENST00000425428 IMUPQ9GZP8 106 aa5.53□□□□□ -1.52
CD44-207ENST00000425428 MMP24-AS1A0A0U1RRL7 71 aa5.52□□□□□ -1.53
CD44-207ENST00000425428 SEC61BP60468 96 aaKnown RBP5.52□□□□□ -1.53
CD44-207ENST00000425428 PCP4P48539 62 aa5.52□□□□□ -1.53
CD44-207ENST00000425428 Q75L30 129 aa5.51□□□□□ -1.53
CD44-207ENST00000425428 HERC1Q15751 4861 aa5.51□□□□□ -1.53
CD44-207ENST00000425428 SCGB1A1P11684 91 aa5.5□□□□□ -1.53
CD44-207ENST00000425428 NOTCH2NLQ7Z3S9 236 aa5.5□□□□□ -1.53
CD44-207ENST00000425428 C20orf166-AS1Q96NR2 134 aa5.5□□□□□ -1.53
CD44-207ENST00000425428 RPL37P61927 97 aaKnown RBP5.49□□□□□ -1.53
CD44-207ENST00000425428 A8MUU9 505 aa5.48□□□□□ -1.53
CD44-207ENST00000425428 LCE1DQ5T752 114 aa5.48□□□□□ -1.53
CD44-207ENST00000425428 TP53AIP1Q9HCN2 124 aa5.48□□□□□ -1.53
CD44-207ENST00000425428 MT-ATP8P03928 68 aa5.47□□□□□ -1.53
CD44-207ENST00000425428 Q8N9P0 234 aaPredicted RBP5.47□□□□□ -1.53
CD44-207ENST00000425428 KRTAP16-1A8MUX0 517 aa5.47□□□□□ -1.53
CD44-207ENST00000425428 A0A087WVE0 104 aa5.46□□□□□ -1.54
CD44-207ENST00000425428 KRTAP19-1Q8IUB9 90 aa5.44□□□□□ -1.54
CD44-207ENST00000425428 PCOTHQ58A44 107 aa5.42□□□□□ -1.54
CD44-207ENST00000425428 ZCCHC13Q8WW36 166 aaKnown RBP5.42□□□□□ -1.54
CD44-207ENST00000425428 SMIM20Q8N5G0 67 aa5.42□□□□□ -1.54
CD44-207ENST00000425428 KRTAP4-2Q9BYR5 136 aa5.42□□□□□ -1.54
CD44-207ENST00000425428 HMCN2Q8NDA2 5059 aa5.4□□□□□ -1.54
CD44-207ENST00000425428 FAM236AA0A1B0GUQ0 79 aa5.4□□□□□ -1.54
CD44-207ENST00000425428 FAM236BA0A1B0GV22 79 aa5.4□□□□□ -1.54
CD44-207ENST00000425428 UQCRQO14949 82 aa5.4□□□□□ -1.54
CD44-207ENST00000425428 KRTAP4-9Q9BYQ8 210 aa5.4□□□□□ -1.54
CD44-207ENST00000425428 LPAP08519 4548 aa5.4□□□□□ -1.54
CD44-207ENST00000425428 ATOX1O00244 68 aa5.38□□□□□ -1.55
CD44-207ENST00000425428 TRAV22A0A0B4J277 110 aa5.37□□□□□ -1.55
CD44-207ENST00000425428 MP68P56378 58 aa5.37□□□□□ -1.55
CD44-207ENST00000425428 LRP2P98164 4655 aa5.35□□□□□ -1.55
CD44-207ENST00000425428 C5orf47Q569G3 176 aa5.34□□□□□ -1.55
CD44-207ENST00000425428 H0Y9P7 68 aa5.33□□□□□ -1.56
CD44-207ENST00000425428 C7orf65Q6ZTY9 151 aa5.33□□□□□ -1.56
CD44-207ENST00000425428 IGKV2D-30A0A075B6S6 120 aa5.32□□□□□ -1.56
CD44-207ENST00000425428 TRAV7A0A075B6U4 112 aa5.32□□□□□ -1.56
CD44-207ENST00000425428 IGKV2-30P06310 120 aa5.32□□□□□ -1.56
CD44-207ENST00000425428 OCR1Q9BZK8 76 aa5.32□□□□□ -1.56
CD44-207ENST00000425428 A0A0U1RQV1 116 aa5.31□□□□□ -1.56
CD44-207ENST00000425428 LOC101927531A0A1B0GV80 90 aa5.31□□□□□ -1.56
CD44-207ENST00000425428 H3BPC8 53 aa5.3□□□□□ -1.56
CD44-207ENST00000425428 SPINK7P58062 85 aa5.3□□□□□ -1.56
CD44-207ENST00000425428 Q5W150 140 aa5.3□□□□□ -1.56
CD44-207ENST00000425428 RBM12B-AS1Q9P1G2 102 aa5.29□□□□□ -1.56
CD44-207ENST00000425428 C1orf64Q8NEQ6 169 aa5.28□□□□□ -1.56
CD44-207ENST00000425428 SERP2Q8N6R1 65 aa5.27□□□□□ -1.57
CD44-207ENST00000425428 LINC00208Q96KT6 92 aa5.27□□□□□ -1.57
CD44-207ENST00000425428 MUC17Q685J3 4493 aa5.26□□□□□ -1.57
CD44-207ENST00000425428 FAM236DA0A1B0GTK5 79 aa5.25□□□□□ -1.57
CD44-207ENST00000425428 FAM236CP0DP71 79 aa5.25□□□□□ -1.57
CD44-207ENST00000425428 ANAPC13Q9BS18 74 aa5.25□□□□□ -1.57
CD44-207ENST00000425428 COX6B2Q6YFQ2 88 aa5.24□□□□□ -1.57
CD44-207ENST00000425428 CYP4F30PQ9H0H9 118 aa5.23□□□□□ -1.57
CD44-207ENST00000425428 KRTAP5-3Q6L8H2 238 aa5.21□□□□□ -1.57
CD44-207ENST00000425428 COX7CP15954 63 aa5.2□□□□□ -1.58
CD44-207ENST00000425428 C20orf197Q8N268 126 aa5.19□□□□□ -1.58
CD44-207ENST00000425428 KRTAP4-1Q9BYQ7 146 aa5.19□□□□□ -1.58
CD44-207ENST00000425428 UBR4Q5T4S7 5183 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms