RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 KRTAP10-1P60331 282 aa6.82□□□□□ -1.32
PTPRF-204ENST00000412568 LCA10Q71F78 164 aa6.81□□□□□ -1.32
PTPRF-204ENST00000412568 KRTAP7-1Q8IUC3 87 aa6.81□□□□□ -1.32
PTPRF-204ENST00000412568 CDC42SE1Q9NRR8 79 aa6.79□□□□□ -1.32
PTPRF-204ENST00000412568 SRRM2Q9UQ35 2752 aaKnown RBP6.78□□□□□ -1.32
PTPRF-204ENST00000412568 Q6ZR54 194 aa6.78□□□□□ -1.32
PTPRF-204ENST00000412568 Q8N9P0 234 aaPredicted RBP6.76□□□□□ -1.33
PTPRF-204ENST00000412568 SPRR1BP22528 89 aa6.76□□□□□ -1.33
PTPRF-204ENST00000412568 SPINT4Q6UDR6 99 aa6.75□□□□□ -1.33
PTPRF-204ENST00000412568 Q6ZRN7 208 aaPredicted RBP6.75□□□□□ -1.33
PTPRF-204ENST00000412568 RBM12B-AS1Q9P1G2 102 aa6.74□□□□□ -1.33
PTPRF-204ENST00000412568 LINC00472Q9H8W2 130 aa6.74□□□□□ -1.33
PTPRF-204ENST00000412568 IGLV7-46A0A075B6I9 117 aa6.72□□□□□ -1.33
PTPRF-204ENST00000412568 MMP24-AS1A0A0U1RRL7 71 aa6.72□□□□□ -1.33
PTPRF-204ENST00000412568 J3QL48 77 aa6.71□□□□□ -1.33
PTPRF-204ENST00000412568 ZNF469Q96JG9 3925 aaPredicted RBP6.71□□□□□ -1.34
PTPRF-204ENST00000412568 Q8N1X5 172 aa6.7□□□□□ -1.34
PTPRF-204ENST00000412568 Q5VV11 94 aa6.7□□□□□ -1.34
PTPRF-204ENST00000412568 PRAC1Q96KF2 57 aa6.68□□□□□ -1.34
PTPRF-204ENST00000412568 LCE6AA0A183 80 aa6.68□□□□□ -1.34
PTPRF-204ENST00000412568 Q75L30 129 aa6.68□□□□□ -1.34
PTPRF-204ENST00000412568 A0A087X002 238 aa6.67□□□□□ -1.34
PTPRF-204ENST00000412568 ANK3Q12955 4377 aaKnown RBP6.67□□□□□ -1.34
PTPRF-204ENST00000412568 HRES1P13985 223 aa6.64□□□□□ -1.35
PTPRF-204ENST00000412568 LINC01558Q9Y6Z2 57 aa6.64□□□□□ -1.35
PTPRF-204ENST00000412568 SPINK7P58062 85 aa6.63□□□□□ -1.35
PTPRF-204ENST00000412568 A0A0D9SG42 100 aa6.59□□□□□ -1.35
PTPRF-204ENST00000412568 NOTCH2NLQ7Z3S9 236 aa6.59□□□□□ -1.35
PTPRF-204ENST00000412568 KRTAP29-1A8MX34 341 aaPredicted RBP6.58□□□□□ -1.36
PTPRF-204ENST00000412568 LINC01554Q52M75 96 aa6.58□□□□□ -1.36
PTPRF-204ENST00000412568 LINC00483Q53H64 154 aa6.57□□□□□ -1.36
PTPRF-204ENST00000412568 CRIPTQ9P021 101 aa6.57□□□□□ -1.36
PTPRF-204ENST00000412568 FBN3Q75N90 2809 aa6.56□□□□□ -1.36
PTPRF-204ENST00000412568 Q5VSD8 79 aa6.56□□□□□ -1.36
PTPRF-204ENST00000412568 ZCCHC13Q8WW36 166 aaKnown RBP6.52□□□□□ -1.37
PTPRF-204ENST00000412568 KRTAP13-1Q8IUC0 172 aa6.51□□□□□ -1.37
PTPRF-204ENST00000412568 H3BS24 57 aa6.5□□□□□ -1.37
PTPRF-204ENST00000412568 CSAG1Q6PB30 78 aa6.5□□□□□ -1.37
PTPRF-204ENST00000412568 Q5W150 140 aa6.5□□□□□ -1.37
PTPRF-204ENST00000412568 COL7A1Q02388 2944 aa6.49□□□□□ -1.37
PTPRF-204ENST00000412568 A0A1B0GU33 70 aa6.49□□□□□ -1.37
PTPRF-204ENST00000412568 KRTAP13-2Q52LG2 175 aa6.48□□□□□ -1.37
PTPRF-204ENST00000412568 COX6B2Q6YFQ2 88 aa6.48□□□□□ -1.37
PTPRF-204ENST00000412568 A8MU10 97 aa6.47□□□□□ -1.37
PTPRF-204ENST00000412568 KRTAP21-3Q3LHN1 58 aa6.41□□□□□ -1.38
PTPRF-204ENST00000412568 Q6ZSA8 131 aa6.41□□□□□ -1.38
PTPRF-204ENST00000412568 MEGF8Q7Z7M0 2845 aa6.4□□□□□ -1.38
PTPRF-204ENST00000412568 CSMD3Q7Z407 3707 aa6.37□□□□□ -1.39
PTPRF-204ENST00000412568 DMAC1Q96GE9 116 aa6.35□□□□□ -1.39
PTPRF-204ENST00000412568 A6NN06 94 aa6.31□□□□□ -1.4
PTPRF-204ENST00000412568 AKAP9Q99996 3911 aa6.31□□□□□ -1.4
PTPRF-204ENST00000412568 ADM2Q7Z4H4 148 aa6.31□□□□□ -1.4
PTPRF-204ENST00000412568 ASB16-AS1Q495Z4 193 aa6.3□□□□□ -1.4
PTPRF-204ENST00000412568 KRTAP1-4P0C5Y4 121 aa6.27□□□□□ -1.41
PTPRF-204ENST00000412568 LUZP6Q538Z0 58 aa6.24□□□□□ -1.41
PTPRF-204ENST00000412568 SPATA8Q6RVD6 105 aa6.24□□□□□ -1.41
PTPRF-204ENST00000412568 RPL37P61927 97 aaKnown RBP6.2□□□□□ -1.42
PTPRF-204ENST00000412568 H1FX-AS1Q4G0G2 97 aa6.19□□□□□ -1.42
PTPRF-204ENST00000412568 S4R3F8 94 aa6.17□□□□□ -1.42
PTPRF-204ENST00000412568 CAMK2N1Q7Z7J9 78 aa6.17□□□□□ -1.42
PTPRF-204ENST00000412568 ROMO1P60602 79 aa6.16□□□□□ -1.42
PTPRF-204ENST00000412568 M0R2T5 61 aa6.16□□□□□ -1.42
PTPRF-204ENST00000412568 SEC61BP60468 96 aaKnown RBP6.13□□□□□ -1.43
PTPRF-204ENST00000412568 RPS29P62273 56 aaKnown RBP6.12□□□□□ -1.43
PTPRF-204ENST00000412568 HUWE1Q7Z6Z7 4374 aaKnown RBP6.1□□□□□ -1.43
PTPRF-204ENST00000412568 KRTAP25-1Q3LHN0 102 aa6.08□□□□□ -1.44
PTPRF-204ENST00000412568 R4GN34 69 aa6.08□□□□□ -1.44
PTPRF-204ENST00000412568 DNHD1Q96M86 4753 aa6.07□□□□□ -1.44
PTPRF-204ENST00000412568 A0A1B0GVY2 172 aa6.03□□□□□ -1.44
PTPRF-204ENST00000412568 A8MUU9 505 aa6.03□□□□□ -1.44
PTPRF-204ENST00000412568 KRTAP16-1A8MUX0 517 aa6.02□□□□□ -1.45
PTPRF-204ENST00000412568 C20orf166-AS1Q96NR2 134 aa6.01□□□□□ -1.45
PTPRF-204ENST00000412568 M0QZ58 72 aa5.99□□□□□ -1.45
PTPRF-204ENST00000412568 A0A0A0MQY5 61 aa5.99□□□□□ -1.45
PTPRF-204ENST00000412568 XP32Q5T750 250 aa5.97□□□□□ -1.45
PTPRF-204ENST00000412568 NDUFAF8A1L188 74 aa5.97□□□□□ -1.45
PTPRF-204ENST00000412568 KRTAP13-3Q3SY46 172 aa5.95□□□□□ -1.46
PTPRF-204ENST00000412568 DNAH9Q9NYC9 4486 aa5.93□□□□□ -1.46
PTPRF-204ENST00000412568 PLECQ15149 4684 aaKnown RBP5.89□□□□□ -1.47
PTPRF-204ENST00000412568 KRTAP10-8P60410 259 aa5.88□□□□□ -1.47
PTPRF-204ENST00000412568 DNAH10Q8IVF4 4471 aa5.84□□□□□ -1.47
PTPRF-204ENST00000412568 C10orf95Q9H7T3 257 aa5.82□□□□□ -1.48
PTPRF-204ENST00000412568 H0YAA0 97 aa5.81□□□□□ -1.48
PTPRF-204ENST00000412568 DNAH11Q96DT5 4516 aa5.78□□□□□ -1.48
PTPRF-204ENST00000412568 PRKDCP78527 4128 aaKnown RBP5.78□□□□□ -1.48
PTPRF-204ENST00000412568 TPRXLQ17RH7 258 aa5.77□□□□□ -1.49
PTPRF-204ENST00000412568 STARD9Q9P2P6 4700 aa5.75□□□□□ -1.49
PTPRF-204ENST00000412568 ANK2Q01484 3957 aa5.73□□□□□ -1.49
PTPRF-204ENST00000412568 DNAH5Q8TE73 4624 aa5.73□□□□□ -1.49
PTPRF-204ENST00000412568 DNAH1Q9P2D7 4330 aa5.72□□□□□ -1.49
PTPRF-204ENST00000412568 P0C880 135 aa5.69□□□□□ -1.5
PTPRF-204ENST00000412568 PLAC4Q8WY50 150 aa5.69□□□□□ -1.5
PTPRF-204ENST00000412568 KRTAP4-5Q9BYR2 181 aa5.67□□□□□ -1.5
PTPRF-204ENST00000412568 FAT1Q14517 4588 aa5.67□□□□□ -1.5
PTPRF-204ENST00000412568 KRTAP3-1Q9BYR8 98 aa5.66□□□□□ -1.5
PTPRF-204ENST00000412568 KRTAP10-4P60372 401 aaPredicted RBP5.64□□□□□ -1.51
PTPRF-204ENST00000412568 KMT2AQ03164 3969 aa5.63□□□□□ -1.51
PTPRF-204ENST00000412568 MT1HL1P0DM35 61 aa5.62□□□□□ -1.51
PTPRF-204ENST00000412568 LYSTQ99698 3801 aa5.6□□□□□ -1.51
PTPRF-204ENST00000412568 VPS13DQ5THJ4 4388 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms