RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KRTAP10-2P60368 255 aa11.03□□□□□ -0.64
USP48-204ENST00000400301 LCE6AA0A183 80 aa11.03□□□□□ -0.64
USP48-204ENST00000400301 C9orf92A6NGG3 77 aa11.02□□□□□ -0.65
USP48-204ENST00000400301 ATP11AUNQ6ZP68 121 aa11.02□□□□□ -0.65
USP48-204ENST00000400301 HRES1P13985 223 aa11.01□□□□□ -0.65
USP48-204ENST00000400301 KRTAP13-1Q8IUC0 172 aa11□□□□□ -0.65
USP48-204ENST00000400301 KRTAP10-1P60331 282 aa10.96□□□□□ -0.65
USP48-204ENST00000400301 A0A087X002 238 aa10.95□□□□□ -0.66
USP48-204ENST00000400301 NOTCH2NLQ7Z3S9 236 aa10.95□□□□□ -0.66
USP48-204ENST00000400301 UQCR11O14957 56 aa10.94□□□□□ -0.66
USP48-204ENST00000400301 Q5VV11 94 aa10.94□□□□□ -0.66
USP48-204ENST00000400301 TRRAPQ9Y4A5 3859 aa10.94□□□□□ -0.66
USP48-204ENST00000400301 Q8N1X5 172 aa10.93□□□□□ -0.66
USP48-204ENST00000400301 Q5W150 140 aa10.92□□□□□ -0.66
USP48-204ENST00000400301 CDC42SE1Q9NRR8 79 aa10.92□□□□□ -0.66
USP48-204ENST00000400301 Q75L30 129 aa10.91□□□□□ -0.66
USP48-204ENST00000400301 LINC01558Q9Y6Z2 57 aa10.9□□□□□ -0.66
USP48-204ENST00000400301 MIR22HGQ0VDD5 57 aa10.86□□□□□ -0.67
USP48-204ENST00000400301 TENM2Q9NT68 2774 aa10.84□□□□□ -0.67
USP48-204ENST00000400301 ZNF469Q96JG9 3925 aaPredicted RBP10.83□□□□□ -0.68
USP48-204ENST00000400301 KTN1-AS1Q86SY8 53 aa10.79□□□□□ -0.68
USP48-204ENST00000400301 TGP01266 2768 aa10.78□□□□□ -0.68
USP48-204ENST00000400301 SPINK7P58062 85 aa10.74□□□□□ -0.69
USP48-204ENST00000400301 DMAC1Q96GE9 116 aa10.7□□□□□ -0.7
USP48-204ENST00000400301 ASB16-AS1Q495Z4 193 aa10.68□□□□□ -0.7
USP48-204ENST00000400301 KRTAP13-2Q52LG2 175 aa10.68□□□□□ -0.7
USP48-204ENST00000400301 DMBT1Q9UGM3 2413 aaPredicted RBP10.68□□□□□ -0.7
USP48-204ENST00000400301 LCA10Q71F78 164 aa10.59□□□□□ -0.71
USP48-204ENST00000400301 AKAP9Q99996 3911 aa10.55□□□□□ -0.72
USP48-204ENST00000400301 A8MU10 97 aa10.53□□□□□ -0.72
USP48-204ENST00000400301 SRRM2Q9UQ35 2752 aaKnown RBP10.51□□□□□ -0.73
USP48-204ENST00000400301 A0A1B0GU33 70 aa10.48□□□□□ -0.73
USP48-204ENST00000400301 RBM12B-AS1Q9P1G2 102 aa10.45□□□□□ -0.74
USP48-204ENST00000400301 Q6ZSA8 131 aa10.44□□□□□ -0.74
USP48-204ENST00000400301 PRAC1Q96KF2 57 aa10.41□□□□□ -0.74
USP48-204ENST00000400301 FLG2Q5D862 2391 aaPredicted RBP10.4□□□□□ -0.74
USP48-204ENST00000400301 A0A0D9SG42 100 aa10.38□□□□□ -0.75
USP48-204ENST00000400301 KRTAP1-4P0C5Y4 121 aa10.38□□□□□ -0.75
USP48-204ENST00000400301 RPS29P62273 56 aaKnown RBP10.35□□□□□ -0.75
USP48-204ENST00000400301 FBN3Q75N90 2809 aa10.34□□□□□ -0.75
USP48-204ENST00000400301 Q5VSD8 79 aa10.33□□□□□ -0.76
USP48-204ENST00000400301 J3QL48 77 aa10.28□□□□□ -0.76
USP48-204ENST00000400301 SPATA8Q6RVD6 105 aa10.27□□□□□ -0.77
USP48-204ENST00000400301 A6NN06 94 aa10.27□□□□□ -0.77
USP48-204ENST00000400301 MEGF8Q7Z7M0 2845 aa10.25□□□□□ -0.77
USP48-204ENST00000400301 COX6B2Q6YFQ2 88 aa10.24□□□□□ -0.77
USP48-204ENST00000400301 SPINT4Q6UDR6 99 aa10.18□□□□□ -0.78
USP48-204ENST00000400301 KRTAP16-1A8MUX0 517 aa10.18□□□□□ -0.78
USP48-204ENST00000400301 S4R3F8 94 aa10.18□□□□□ -0.78
USP48-204ENST00000400301 H1FX-AS1Q4G0G2 97 aa10.17□□□□□ -0.78
USP48-204ENST00000400301 HUWE1Q7Z6Z7 4374 aaKnown RBP10.17□□□□□ -0.78
USP48-204ENST00000400301 CSAG1Q6PB30 78 aa10.16□□□□□ -0.78
USP48-204ENST00000400301 KRTAP21-3Q3LHN1 58 aa10.15□□□□□ -0.78
USP48-204ENST00000400301 LINC01554Q52M75 96 aa10.15□□□□□ -0.79
USP48-204ENST00000400301 KRTAP13-3Q3SY46 172 aa10.14□□□□□ -0.79
USP48-204ENST00000400301 CRIPTQ9P021 101 aa10.13□□□□□ -0.79
USP48-204ENST00000400301 A8MUU9 505 aa10.12□□□□□ -0.79
USP48-204ENST00000400301 C20orf166-AS1Q96NR2 134 aa10.1□□□□□ -0.79
USP48-204ENST00000400301 COL7A1Q02388 2944 aa10.07□□□□□ -0.8
USP48-204ENST00000400301 CSMD3Q7Z407 3707 aa10.05□□□□□ -0.8
USP48-204ENST00000400301 ADM2Q7Z4H4 148 aa10.03□□□□□ -0.8
USP48-204ENST00000400301 RPL37P61927 97 aaKnown RBP10□□□□□ -0.81
USP48-204ENST00000400301 ROMO1P60602 79 aa9.86□□□□□ -0.83
USP48-204ENST00000400301 DNAH9Q9NYC9 4486 aa9.84□□□□□ -0.83
USP48-204ENST00000400301 SEC61BP60468 96 aaKnown RBP9.83□□□□□ -0.84
USP48-204ENST00000400301 R4GN34 69 aa9.8□□□□□ -0.84
USP48-204ENST00000400301 A0A1B0GVY2 172 aa9.78□□□□□ -0.84
USP48-204ENST00000400301 XP32Q5T750 250 aa9.75□□□□□ -0.85
USP48-204ENST00000400301 DNAH10Q8IVF4 4471 aa9.74□□□□□ -0.85
USP48-204ENST00000400301 H0YAA0 97 aa9.74□□□□□ -0.85
USP48-204ENST00000400301 PLECQ15149 4684 aaKnown RBP9.73□□□□□ -0.85
USP48-204ENST00000400301 M0QZ58 72 aa9.72□□□□□ -0.85
USP48-204ENST00000400301 KRTAP25-1Q3LHN0 102 aa9.7□□□□□ -0.86
USP48-204ENST00000400301 CAMK2N1Q7Z7J9 78 aa9.69□□□□□ -0.86
USP48-204ENST00000400301 KRTAP10-8P60410 259 aa9.61□□□□□ -0.87
USP48-204ENST00000400301 DNAH1Q9P2D7 4330 aa9.6□□□□□ -0.87
USP48-204ENST00000400301 KRTAP3-1Q9BYR8 98 aa9.55□□□□□ -0.88
USP48-204ENST00000400301 ANK2Q01484 3957 aa9.51□□□□□ -0.89
USP48-204ENST00000400301 VPS13DQ5THJ4 4388 aa9.48□□□□□ -0.89
USP48-204ENST00000400301 DNAH11Q96DT5 4516 aa9.48□□□□□ -0.89
USP48-204ENST00000400301 H3BS24 57 aa9.46□□□□□ -0.9
USP48-204ENST00000400301 M0R2T5 61 aa9.46□□□□□ -0.9
USP48-204ENST00000400301 P0C880 135 aa9.45□□□□□ -0.9
USP48-204ENST00000400301 STARD9Q9P2P6 4700 aa9.44□□□□□ -0.9
USP48-204ENST00000400301 TPRXLQ17RH7 258 aa9.43□□□□□ -0.9
USP48-204ENST00000400301 DNAH17Q9UFH2 4485 aa9.38□□□□□ -0.91
USP48-204ENST00000400301 DNAH3Q8TD57 4116 aa9.35□□□□□ -0.91
USP48-204ENST00000400301 KRTAP10-4P60372 401 aaPredicted RBP9.34□□□□□ -0.91
USP48-204ENST00000400301 DNHD1Q96M86 4753 aa9.33□□□□□ -0.92
USP48-204ENST00000400301 PRKDCP78527 4128 aaKnown RBP9.32□□□□□ -0.92
USP48-204ENST00000400301 C10orf95Q9H7T3 257 aa9.3□□□□□ -0.92
USP48-204ENST00000400301 DNAH5Q8TE73 4624 aa9.3□□□□□ -0.92
USP48-204ENST00000400301 LUZP6Q538Z0 58 aa9.29□□□□□ -0.92
USP48-204ENST00000400301 CMYA5Q8N3K9 4069 aa9.28□□□□□ -0.92
USP48-204ENST00000400301 DNAH8Q96JB1 4490 aa9.25□□□□□ -0.93
USP48-204ENST00000400301 DNAH2Q9P225 4427 aa9.22□□□□□ -0.93
USP48-204ENST00000400301 LYSTQ99698 3801 aa9.2□□□□□ -0.94
USP48-204ENST00000400301 KMT2AQ03164 3969 aa9.19□□□□□ -0.94
USP48-204ENST00000400301 LRP1BQ9NZR2 4599 aa9.19□□□□□ -0.94
USP48-204ENST00000400301 ALMS1Q8TCU4 4167 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms