RNA–Protein interactions for RNA: ENST00000390467.3

TRAV40-201, Transcript of T cell receptor alpha variable 40, humanhuman

APPRIS P1 BASIC

Gene TRAV40, Length 317 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40-201ENST00000390467 FRAS1Q86XX4 4008 aa0.5□□□□□ -2.33
TRAV40-201ENST00000390467 COL6A5A8TX70 2615 aa0.5□□□□□ -2.33
TRAV40-201ENST00000390467 NOP10Q9NPE3 64 aaKnown RBP0.5□□□□□ -2.33
TRAV40-201ENST00000390467 SPENQ96T58 3664 aaKnown RBP0.5□□□□□ -2.33
TRAV40-201ENST00000390467 CEP250Q9BV73 2442 aa0.5□□□□□ -2.33
TRAV40-201ENST00000390467 PDZD2O15018 2839 aa0.5□□□□□ -2.33
TRAV40-201ENST00000390467 NF1P21359 2839 aa0.5□□□□□ -2.33
TRAV40-201ENST00000390467 TENM2Q9NT68 2774 aa0.5□□□□□ -2.33
TRAV40-201ENST00000390467 SACSQ9NZJ4 4579 aa0.49□□□□□ -2.33
TRAV40-201ENST00000390467 SPINK1P00995 79 aa0.49□□□□□ -2.33
TRAV40-201ENST00000390467 TOMM7Q9P0U1 55 aa0.49□□□□□ -2.33
TRAV40-201ENST00000390467 APC2O95996 2303 aa0.49□□□□□ -2.33
TRAV40-201ENST00000390467 SPTBN5Q9NRC6 3674 aaKnown RBP0.49□□□□□ -2.33
TRAV40-201ENST00000390467 FRYQ5TBA9 3013 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 CRYBG3Q68DQ2 2970 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 CCDC168Q8NDH2 2452 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 FAM186AA6NE01 2351 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 FLNCQ14315 2725 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 COL12A1Q99715 3063 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 SPTBN4Q9H254 2564 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 K7EIM0 57 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 ZZEF1O43149 2961 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 DEFB104AQ8WTQ1 72 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 HIVEP3Q5T1R4 2406 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 PKD1L1Q8TDX9 2849 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 ZFHX4Q86UP3 3567 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 VPS13DQ5THJ4 4388 aa0.48□□□□□ -2.33
TRAV40-201ENST00000390467 AHNAKQ09666 5890 aaKnown RBP0.47□□□□□ -2.33
TRAV40-201ENST00000390467 NBEAL2Q6ZNJ1 2754 aa0.47□□□□□ -2.33
TRAV40-201ENST00000390467 SETXQ7Z333 2677 aaKnown RBP0.47□□□□□ -2.33
TRAV40-201ENST00000390467 USP24Q9UPU5 2620 aa0.47□□□□□ -2.33
TRAV40-201ENST00000390467 LRRK2Q5S007 2527 aa0.46□□□□□ -2.34
TRAV40-201ENST00000390467 AKAP9Q99996 3911 aa0.46□□□□□ -2.34
TRAV40-201ENST00000390467 DNAH7Q8WXX0 4024 aa0.46□□□□□ -2.34
TRAV40-201ENST00000390467 TMEM167AQ8TBQ9 72 aa0.46□□□□□ -2.34
TRAV40-201ENST00000390467 SMR3AQ99954 134 aa0.46□□□□□ -2.34
TRAV40-201ENST00000390467 HECTD4Q9Y4D8 3996 aa0.46□□□□□ -2.34
TRAV40-201ENST00000390467 DNAH3Q8TD57 4116 aa0.46□□□□□ -2.34
TRAV40-201ENST00000390467 TACC2O95359 2948 aa0.45□□□□□ -2.34
TRAV40-201ENST00000390467 GCN1Q92616 2671 aaKnown RBP0.45□□□□□ -2.34
TRAV40-201ENST00000390467 TNXBP22105 4242 aa0.45□□□□□ -2.34
TRAV40-201ENST00000390467 UNC79Q9P2D8 2635 aa0.45□□□□□ -2.34
TRAV40-201ENST00000390467 ZFYVE26Q68DK2 2539 aa0.45□□□□□ -2.34
TRAV40-201ENST00000390467 MYCBP2O75592 4640 aa0.45□□□□□ -2.34
TRAV40-201ENST00000390467 HUWE1Q7Z6Z7 4374 aaKnown RBP0.45□□□□□ -2.34
TRAV40-201ENST00000390467 PTPN13Q12923 2485 aa0.45□□□□□ -2.34
TRAV40-201ENST00000390467 UTP20O75691 2785 aaKnown RBP0.45□□□□□ -2.34
TRAV40-201ENST00000390467 USP9YO00507 2555 aaPredicted RBP0.45□□□□□ -2.34
TRAV40-201ENST00000390467 DNAH8Q96JB1 4490 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 DMXL1Q9Y485 3027 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 M0QZ58 72 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 KRTAP2-3P0C7H8 128 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 DEFB135Q30KP9 77 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 KRTAP2-4Q9BYR9 128 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 KRTAP2-1Q9BYU5 128 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 CUBNO60494 3623 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 CFAP54Q96N23 3096 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 MTORP42345 2549 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 NCOR2Q9Y618 2525 aa0.44□□□□□ -2.34
TRAV40-201ENST00000390467 DYNC2H1Q8NCM8 4307 aaKnown RBP0.44□□□□□ -2.34
TRAV40-201ENST00000390467 SMG1Q96Q15 3661 aaKnown RBP0.44□□□□□ -2.34
TRAV40-201ENST00000390467 NBEAQ8NFP9 2946 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 PKHD1L1Q86WI1 4243 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 ACANP16112 2415 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 SPG11Q96JI7 2443 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 LAMA5O15230 3695 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 H0YGG7 62 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 M0R2T5 61 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 RPL39P5Q59GN2 51 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 ITPR3Q14573 2671 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 NSD1Q96L73 2696 aaPredicted RBP0.43□□□□□ -2.34
TRAV40-201ENST00000390467 HIVEP1P15822 2718 aa0.43□□□□□ -2.34
TRAV40-201ENST00000390467 ANK3Q12955 4377 aaKnown RBP0.43□□□□□ -2.34
TRAV40-201ENST00000390467 KALRNO60229 2985 aa0.42□□□□□ -2.34
TRAV40-201ENST00000390467 ANKHD1Q8IWZ3 2542 aaKnown RBP0.42□□□□□ -2.34
TRAV40-201ENST00000390467 PKD1P98161 4303 aa0.42□□□□□ -2.34
TRAV40-201ENST00000390467 SPINK6Q6UWN8 80 aa0.42□□□□□ -2.34
TRAV40-201ENST00000390467 FLGP20930 4061 aaPredicted RBP0.42□□□□□ -2.34
TRAV40-201ENST00000390467 ATMQ13315 3056 aa0.42□□□□□ -2.34
TRAV40-201ENST00000390467 FLNBO75369 2602 aaKnown RBP0.42□□□□□ -2.34
TRAV40-201ENST00000390467 USP9XQ93008 2570 aaPredicted RBP0.42□□□□□ -2.34
TRAV40-201ENST00000390467 DNAH2Q9P225 4427 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 DMXL2Q8TDJ6 3036 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 DEFB108AA8MXU0 73 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 COL7A1Q02388 2944 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 ITPR1Q14643 2758 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 DNAH9Q9NYC9 4486 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 RANBP2P49792 3224 aaKnown RBP0.41□□□□□ -2.34
TRAV40-201ENST00000390467 DNAH12Q6ZR08 3092 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 ZANQ9Y493 2812 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 STAB1Q9NY15 2570 aa0.41□□□□□ -2.34
TRAV40-201ENST00000390467 RELNP78509 3460 aa0.4□□□□□ -2.34
TRAV40-201ENST00000390467 LRBAP50851 2863 aa0.4□□□□□ -2.34
TRAV40-201ENST00000390467 PRUNE2Q8WUY3 3088 aa0.4□□□□□ -2.35
TRAV40-201ENST00000390467 ANKRD11Q6UB99 2663 aaPredicted RBP0.4□□□□□ -2.35
TRAV40-201ENST00000390467 C9orf92A6NGG3 77 aa0.4□□□□□ -2.35
TRAV40-201ENST00000390467 KRTAP19-3Q7Z4W3 81 aa0.4□□□□□ -2.35
TRAV40-201ENST00000390467 HSPG2P98160 4391 aa0.4□□□□□ -2.35
TRAV40-201ENST00000390467 FASNP49327 2511 aaKnown RBP0.4□□□□□ -2.35
TRAV40-201ENST00000390467 MAST4O15021 2626 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms