RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NBEAL2Q6ZNJ1 2754 aa4.91□□□□□ -1.62
LIMCH1-202ENST00000381753 APCP25054 2843 aa4.89□□□□□ -1.63
LIMCH1-202ENST00000381753 TNRC18O15417 2968 aaPredicted RBP4.88□□□□□ -1.63
LIMCH1-202ENST00000381753 UNC80Q8N2C7 3258 aa4.88□□□□□ -1.63
LIMCH1-202ENST00000381753 TENM1Q9UKZ4 2725 aa4.86□□□□□ -1.63
LIMCH1-202ENST00000381753 KRTAP7-1Q8IUC3 87 aa4.86□□□□□ -1.63
LIMCH1-202ENST00000381753 COL12A1Q99715 3063 aa4.85□□□□□ -1.63
LIMCH1-202ENST00000381753 TRIOO75962 3097 aa4.85□□□□□ -1.63
LIMCH1-202ENST00000381753 ASH1LQ9NR48 2969 aaKnown RBP4.84□□□□□ -1.63
LIMCH1-202ENST00000381753 BRCA2P51587 3418 aa4.84□□□□□ -1.64
LIMCH1-202ENST00000381753 EYSQ5T1H1 3165 aa4.84□□□□□ -1.64
LIMCH1-202ENST00000381753 FRYLO94915 3013 aa4.83□□□□□ -1.64
LIMCH1-202ENST00000381753 TENM3Q9P273 2699 aa4.83□□□□□ -1.64
LIMCH1-202ENST00000381753 KRTAP25-1Q3LHN0 102 aa4.81□□□□□ -1.64
LIMCH1-202ENST00000381753 C10orf95Q9H7T3 257 aa4.8□□□□□ -1.64
LIMCH1-202ENST00000381753 LRBAP50851 2863 aa4.79□□□□□ -1.64
LIMCH1-202ENST00000381753 ATMQ13315 3056 aa4.78□□□□□ -1.64
LIMCH1-202ENST00000381753 P0C880 135 aa4.77□□□□□ -1.65
LIMCH1-202ENST00000381753 LAMA1P25391 3075 aa4.76□□□□□ -1.65
LIMCH1-202ENST00000381753 XIRP2A4UGR9 3374 aa4.76□□□□□ -1.65
LIMCH1-202ENST00000381753 NBEAQ8NFP9 2946 aa4.74□□□□□ -1.65
LIMCH1-202ENST00000381753 COL6A3P12111 3177 aa4.74□□□□□ -1.65
LIMCH1-202ENST00000381753 PP632Q6XCG6 107 aa4.73□□□□□ -1.65
LIMCH1-202ENST00000381753 SZT2Q5T011 3432 aa4.72□□□□□ -1.65
LIMCH1-202ENST00000381753 NIPBLQ6KC79 2804 aaeCLIP4.71□□□□□ -1.66
LIMCH1-202ENST00000381753 DMXL2Q8TDJ6 3036 aa4.71□□□□□ -1.66
LIMCH1-202ENST00000381753 VCANP13611 3396 aa4.7□□□□□ -1.66
LIMCH1-202ENST00000381753 PKD1L1Q8TDX9 2849 aa4.69□□□□□ -1.66
LIMCH1-202ENST00000381753 KRTAP4-5Q9BYR2 181 aa4.68□□□□□ -1.66
LIMCH1-202ENST00000381753 VPS13AQ96RL7 3174 aa4.68□□□□□ -1.66
LIMCH1-202ENST00000381753 NF1P21359 2839 aa4.67□□□□□ -1.66
LIMCH1-202ENST00000381753 FBN3Q75N90 2809 aa4.62□□□□□ -1.67
LIMCH1-202ENST00000381753 KALRNO60229 2985 aa4.62□□□□□ -1.67
LIMCH1-202ENST00000381753 CDH23Q9H251 3354 aa4.61□□□□□ -1.67
LIMCH1-202ENST00000381753 CELSR2Q9HCU4 2923 aa4.61□□□□□ -1.67
LIMCH1-202ENST00000381753 DCHS2Q6V1P9 2916 aa4.61□□□□□ -1.67
LIMCH1-202ENST00000381753 ZZEF1O43149 2961 aa4.57□□□□□ -1.68
LIMCH1-202ENST00000381753 CELSR3Q9NYQ7 3312 aa4.57□□□□□ -1.68
LIMCH1-202ENST00000381753 LORP23490 312 aaPredicted RBP4.57□□□□□ -1.68
LIMCH1-202ENST00000381753 MXRA5Q9NR99 2828 aa4.56□□□□□ -1.68
LIMCH1-202ENST00000381753 BOD1L1Q8NFC6 3051 aa4.55□□□□□ -1.68
LIMCH1-202ENST00000381753 VWFP04275 2813 aa4.55□□□□□ -1.68
LIMCH1-202ENST00000381753 H0YAA0 97 aa4.52□□□□□ -1.69
LIMCH1-202ENST00000381753 CELSR1Q9NYQ6 3014 aa4.52□□□□□ -1.69
LIMCH1-202ENST00000381753 DMXL1Q9Y485 3027 aa4.51□□□□□ -1.69
LIMCH1-202ENST00000381753 MT1HL1P0DM35 61 aa4.49□□□□□ -1.69
LIMCH1-202ENST00000381753 USP34Q70CQ2 3546 aa4.49□□□□□ -1.69
LIMCH1-202ENST00000381753 FBN2P35556 2912 aa4.48□□□□□ -1.69
LIMCH1-202ENST00000381753 CFAP47Q6ZTR5 3102 aa4.47□□□□□ -1.69
LIMCH1-202ENST00000381753 PDZD2O15018 2839 aa4.47□□□□□ -1.69
LIMCH1-202ENST00000381753 CRCT1Q9UGL9 99 aa4.46□□□□□ -1.69
LIMCH1-202ENST00000381753 NBPF19A0A087WUL8 3843 aa4.46□□□□□ -1.7
LIMCH1-202ENST00000381753 ADGRG4Q8IZF6 3080 aa4.44□□□□□ -1.7
LIMCH1-202ENST00000381753 DNAH14Q0VDD8 3507 aa4.42□□□□□ -1.7
LIMCH1-202ENST00000381753 SPEGQ15772 3267 aa4.4□□□□□ -1.7
LIMCH1-202ENST00000381753 ZFHX3Q15911 3703 aa4.38□□□□□ -1.71
LIMCH1-202ENST00000381753 ZANQ9Y493 2812 aa4.37□□□□□ -1.71
LIMCH1-202ENST00000381753 TGP01266 2768 aa4.36□□□□□ -1.71
LIMCH1-202ENST00000381753 SRRM2Q9UQ35 2752 aaKnown RBP4.34□□□□□ -1.71
LIMCH1-202ENST00000381753 OTOGQ6ZRI0 2925 aa4.33□□□□□ -1.72
LIMCH1-202ENST00000381753 KRTAP8-1Q8IUC2 63 aa4.32□□□□□ -1.72
LIMCH1-202ENST00000381753 KRTAP15-1Q3LI76 137 aa4.3□□□□□ -1.72
LIMCH1-202ENST00000381753 SPTBN5Q9NRC6 3674 aaKnown RBP4.29□□□□□ -1.72
LIMCH1-202ENST00000381753 FBN1P35555 2871 aaKnown RBP4.27□□□□□ -1.73
LIMCH1-202ENST00000381753 KRTAP12-2P59991 146 aa4.25□□□□□ -1.73
LIMCH1-202ENST00000381753 DCHS1Q96JQ0 3298 aa4.24□□□□□ -1.73
LIMCH1-202ENST00000381753 ALMS1Q8TCU4 4167 aa4.24□□□□□ -1.73
LIMCH1-202ENST00000381753 KRTAP13-4Q3LI77 160 aa4.22□□□□□ -1.73
LIMCH1-202ENST00000381753 HRNRQ86YZ3 2850 aaPredicted RBP4.21□□□□□ -1.74
LIMCH1-202ENST00000381753 KRTAP10-12P60413 245 aa4.2□□□□□ -1.74
LIMCH1-202ENST00000381753 ANK3Q12955 4377 aaKnown RBP4.15□□□□□ -1.75
LIMCH1-202ENST00000381753 LOC400499M0QZD8 3231 aa4.13□□□□□ -1.75
LIMCH1-202ENST00000381753 KRTAP10-4P60372 401 aaPredicted RBP4.13□□□□□ -1.75
LIMCH1-202ENST00000381753 SPRR2FQ96RM1 72 aa4.12□□□□□ -1.75
LIMCH1-202ENST00000381753 MYO15AQ9UKN7 3530 aa4.12□□□□□ -1.75
LIMCH1-202ENST00000381753 KRTAP10-6P60371 365 aaPredicted RBP4.08□□□□□ -1.76
LIMCH1-202ENST00000381753 KRTAP17-1Q9BYP8 105 aa4.08□□□□□ -1.76
LIMCH1-202ENST00000381753 MUC3AQ02505 3323 aa4.08□□□□□ -1.76
LIMCH1-202ENST00000381753 COL7A1Q02388 2944 aa4.06□□□□□ -1.76
LIMCH1-202ENST00000381753 KRTAP12-1P59990 96 aa4.05□□□□□ -1.76
LIMCH1-202ENST00000381753 MT1HP80294 61 aa4.05□□□□□ -1.76
LIMCH1-202ENST00000381753 SPRR2EP22531 72 aa4.03□□□□□ -1.76
LIMCH1-202ENST00000381753 SPRR2BP35325 72 aa4.03□□□□□ -1.76
LIMCH1-202ENST00000381753 SPRR2AP35326 72 aa4.03□□□□□ -1.76
LIMCH1-202ENST00000381753 RELNP78509 3460 aa4.02□□□□□ -1.77
LIMCH1-202ENST00000381753 ZFHX4Q86UP3 3567 aa4.02□□□□□ -1.77
LIMCH1-202ENST00000381753 HUWE1Q7Z6Z7 4374 aaKnown RBP4.01□□□□□ -1.77
LIMCH1-202ENST00000381753 WDFY3Q8IZQ1 3526 aa3.99□□□□□ -1.77
LIMCH1-202ENST00000381753 KRTAP10-7P60409 375 aaPredicted RBP3.98□□□□□ -1.77
LIMCH1-202ENST00000381753 ASPMQ8IZT6 3477 aa3.94□□□□□ -1.78
LIMCH1-202ENST00000381753 KRTAP3-1Q9BYR8 98 aa3.93□□□□□ -1.78
LIMCH1-202ENST00000381753 MEGF8Q7Z7M0 2845 aa3.93□□□□□ -1.78
LIMCH1-202ENST00000381753 SPRR2DP22532 72 aa3.92□□□□□ -1.78
LIMCH1-202ENST00000381753 KRTAP12-3P60328 96 aa3.92□□□□□ -1.78
LIMCH1-202ENST00000381753 DNAH1Q9P2D7 4330 aa3.91□□□□□ -1.78
LIMCH1-202ENST00000381753 CUBNO60494 3623 aa3.89□□□□□ -1.79
LIMCH1-202ENST00000381753 CSMD1Q96PZ7 3565 aa3.88□□□□□ -1.79
LIMCH1-202ENST00000381753 INE1O15225 51 aa3.87□□□□□ -1.79
LIMCH1-202ENST00000381753 MT2AP02795 61 aa3.86□□□□□ -1.79
LIMCH1-202ENST00000381753 DMDP11532 3685 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms