RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 DCAF8L2P0C7V8 631 aa17.36■□□□□ 0.37
LIMCH1-202ENST00000381753 FAM9AQ8IZU1 332 aaPredicted RBP15.7■□□□□ 0.1
LIMCH1-202ENST00000381753 NISCHQ9Y2I1 1504 aa15.47■□□□□ 0.07
LIMCH1-202ENST00000381753 SUPT5HO00267 1087 aaKnown RBP15.09■□□□□ 0.01
LIMCH1-202ENST00000381753 EHMT2Q96KQ7 1210 aa15.01□□□□□ -0.01
LIMCH1-202ENST00000381753 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
LIMCH1-202ENST00000381753 MYT1LQ9UL68 1186 aa14.95□□□□□ -0.02
LIMCH1-202ENST00000381753 APLP2Q06481 763 aa14.89□□□□□ -0.03
LIMCH1-202ENST00000381753 ATP1B4Q9UN42 357 aaPredicted RBP14.86□□□□□ -0.03
LIMCH1-202ENST00000381753 TTBK1Q5TCY1 1321 aaPredicted RBP14.79□□□□□ -0.04
LIMCH1-202ENST00000381753 RANGAP1P46060 587 aaPredicted RBP14.73□□□□□ -0.05
LIMCH1-202ENST00000381753 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.61□□□□□ -0.07
LIMCH1-202ENST00000381753 HNRNPUL2Q1KMD3 747 aaKnown RBP14.61□□□□□ -0.07
LIMCH1-202ENST00000381753 CHIC1Q5VXU3 224 aa14.55□□□□□ -0.08
LIMCH1-202ENST00000381753 ABCC9O60706 1549 aa14.49□□□□□ -0.09
LIMCH1-202ENST00000381753 PABPN1Q86U42 306 aaKnown RBP eCLIP14.44□□□□□ -0.1
LIMCH1-202ENST00000381753 FBLN2P98095 1184 aa14.4□□□□□ -0.1
LIMCH1-202ENST00000381753 PLPPR3Q6T4P5 718 aa14.22□□□□□ -0.13
LIMCH1-202ENST00000381753 UBTFP17480 764 aaKnown RBP14.18□□□□□ -0.14
LIMCH1-202ENST00000381753 ESF1Q9H501 851 aaKnown RBP14.13□□□□□ -0.15
LIMCH1-202ENST00000381753 BCANQ96GW7 911 aa14.11□□□□□ -0.15
LIMCH1-202ENST00000381753 NPM1P06748 294 aaKnown RBP eCLIP14.1□□□□□ -0.15
LIMCH1-202ENST00000381753 TRIM41Q8WV44 630 aa14.03□□□□□ -0.16
LIMCH1-202ENST00000381753 TRHP20396 242 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-202ENST00000381753 AEBP2Q6ZN18 517 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-202ENST00000381753 SLC4A1APQ9BWU0 796 aaKnown RBP13.99□□□□□ -0.17
LIMCH1-202ENST00000381753 PELP1Q8IZL8 1130 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-202ENST00000381753 POLR3GLQ9BT43 218 aa13.74□□□□□ -0.21
LIMCH1-202ENST00000381753 STAG3Q9UJ98 1225 aa13.73□□□□□ -0.21
LIMCH1-202ENST00000381753 ITGAEP38570 1179 aa13.7□□□□□ -0.22
LIMCH1-202ENST00000381753 ARID4BQ4LE39 1312 aaPredicted RBP13.66□□□□□ -0.22
LIMCH1-202ENST00000381753 SLC24A1O60721 1099 aa13.64□□□□□ -0.23
LIMCH1-202ENST00000381753 SCAF1Q9H7N4 1312 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-202ENST00000381753 ARID3CA6NKF2 412 aa13.63□□□□□ -0.23
LIMCH1-202ENST00000381753 ERCC6Q03468 1493 aa13.6□□□□□ -0.23
LIMCH1-202ENST00000381753 A0A0G2JS52 829 aa13.59□□□□□ -0.23
LIMCH1-202ENST00000381753 CHMP7Q8WUX9 453 aaPredicted RBP13.55□□□□□ -0.24
LIMCH1-202ENST00000381753 C14orf37Q86TY3 774 aa13.53□□□□□ -0.24
LIMCH1-202ENST00000381753 SENP3Q9H4L4 574 aaPredicted RBP13.5□□□□□ -0.25
LIMCH1-202ENST00000381753 ZNF777Q9ULD5 760 aaPredicted RBP13.48□□□□□ -0.25
LIMCH1-202ENST00000381753 HAP1P54257 671 aaPredicted RBP13.47□□□□□ -0.25
LIMCH1-202ENST00000381753 CHGAP10645 457 aaKnown RBP13.47□□□□□ -0.25
LIMCH1-202ENST00000381753 PCGF6Q9BYE7 350 aa13.45□□□□□ -0.26
LIMCH1-202ENST00000381753 CNGB1Q14028 1251 aaPredicted RBP13.45□□□□□ -0.26
LIMCH1-202ENST00000381753 TRIM52Q96A61 297 aa13.45□□□□□ -0.26
LIMCH1-202ENST00000381753 CDK11AQ9UQ88 783 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-202ENST00000381753 MYT1Q01538 1121 aa13.4□□□□□ -0.26
LIMCH1-202ENST00000381753 FAM50AQ14320 339 aaKnown RBP13.4□□□□□ -0.26
LIMCH1-202ENST00000381753 PLEKHG5O94827 1062 aa13.37□□□□□ -0.27
LIMCH1-202ENST00000381753 P3H3Q8IVL6 736 aa13.35□□□□□ -0.27
LIMCH1-202ENST00000381753 CCER1Q8TC90 406 aaPredicted RBP13.3□□□□□ -0.28
LIMCH1-202ENST00000381753 KCNH8Q96L42 1107 aa13.29□□□□□ -0.28
LIMCH1-202ENST00000381753 PPARGC1BQ86YN6 1023 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-202ENST00000381753 PPP1R15AO75807 674 aaPredicted RBP13.28□□□□□ -0.28
LIMCH1-202ENST00000381753 ZNF326Q5BKZ1 582 aaKnown RBP13.27□□□□□ -0.28
LIMCH1-202ENST00000381753 ZBTB7CA1YPR0 619 aa13.27□□□□□ -0.29
LIMCH1-202ENST00000381753 NEFMP07197 916 aa13.26□□□□□ -0.29
LIMCH1-202ENST00000381753 SCRIBQ14160 1630 aa13.25□□□□□ -0.29
LIMCH1-202ENST00000381753 NPM2Q86SE8 214 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-202ENST00000381753 PHF23Q9BUL5 403 aaPredicted RBP13.19□□□□□ -0.3
LIMCH1-202ENST00000381753 ERICH6Q7L0X2 663 aa13.18□□□□□ -0.3
LIMCH1-202ENST00000381753 DCAF8L1A6NGE4 600 aa13.17□□□□□ -0.3
LIMCH1-202ENST00000381753 RB1CC1Q8TDY2 1594 aa13.15□□□□□ -0.3
LIMCH1-202ENST00000381753 MLECQ14165 292 aa13.14□□□□□ -0.31
LIMCH1-202ENST00000381753 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.14□□□□□ -0.31
LIMCH1-202ENST00000381753 LMOD2Q6P5Q4 547 aa13.1□□□□□ -0.31
LIMCH1-202ENST00000381753 ZBTB47Q9UFB7 747 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-202ENST00000381753 NPHP1O15259 732 aa13.06□□□□□ -0.32
LIMCH1-202ENST00000381753 BCL11AQ9H165 835 aa13.01□□□□□ -0.33
LIMCH1-202ENST00000381753 CCDC9Q9Y3X0 531 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-202ENST00000381753 TSPY4P0CV99 314 aa12.99□□□□□ -0.33
LIMCH1-202ENST00000381753 TSPY10P0CW01 314 aa12.99□□□□□ -0.33
LIMCH1-202ENST00000381753 CYB5RLQ6IPT4 315 aa12.99□□□□□ -0.33
LIMCH1-202ENST00000381753 NEFLP07196 543 aa12.98□□□□□ -0.33
LIMCH1-202ENST00000381753 ARXQ96QS3 562 aa12.97□□□□□ -0.33
LIMCH1-202ENST00000381753 MEX3CQ5U5Q3 659 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-202ENST00000381753 PLEKHD1A6NEE1 506 aa12.97□□□□□ -0.33
LIMCH1-202ENST00000381753 FOXD1Q16676 465 aa12.95□□□□□ -0.34
LIMCH1-202ENST00000381753 NEUROD1Q13562 356 aa12.91□□□□□ -0.34
LIMCH1-202ENST00000381753 OSCARQ8IYS5 282 aa12.91□□□□□ -0.34
LIMCH1-202ENST00000381753 CLSPNQ9HAW4 1339 aa12.87□□□□□ -0.35
LIMCH1-202ENST00000381753 HDGFP51858 240 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-202ENST00000381753 DAXXQ9UER7 740 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-202ENST00000381753 CENPBP07199 599 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-202ENST00000381753 CECR2Q9BXF3 1484 aa12.83□□□□□ -0.36
LIMCH1-202ENST00000381753 CANXP27824 592 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-202ENST00000381753 BAZ1BQ9UIG0 1483 aaKnown RBP12.77□□□□□ -0.36
LIMCH1-202ENST00000381753 CHIC2Q9UKJ5 165 aa12.74□□□□□ -0.37
LIMCH1-202ENST00000381753 PDS5BQ9NTI5 1447 aa12.74□□□□□ -0.37
LIMCH1-202ENST00000381753 KLHL34Q8N239 644 aa12.72□□□□□ -0.37
LIMCH1-202ENST00000381753 ZEB1P37275 1124 aaPredicted RBP12.71□□□□□ -0.37
LIMCH1-202ENST00000381753 TMX4Q9H1E5 349 aaPredicted RBP12.71□□□□□ -0.38
LIMCH1-202ENST00000381753 SF3B2Q13435 895 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-202ENST00000381753 POGKQ9P215 609 aa12.69□□□□□ -0.38
LIMCH1-202ENST00000381753 CSRNP3Q8WYN3 585 aa12.69□□□□□ -0.38
LIMCH1-202ENST00000381753 YTHDC1Q96MU7 727 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-202ENST00000381753 NACADO15069 1562 aa12.68□□□□□ -0.38
LIMCH1-202ENST00000381753 EID1Q9Y6B2 187 aa12.67□□□□□ -0.38
LIMCH1-202ENST00000381753 GGT6Q6P531 493 aa12.66□□□□□ -0.38
LIMCH1-202ENST00000381753 MTUS2Q5JR59 1369 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 143.4 ms