RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 IGLV7-46A0A075B6I9 117 aa9.69□□□□□ -0.86
NKX3-1-201ENST00000380871 CHKB-CPT1BH3BT56 60 aa9.69□□□□□ -0.86
NKX3-1-201ENST00000380871 V9GYY9 64 aa9.69□□□□□ -0.86
NKX3-1-201ENST00000380871 LINC00483Q53H64 154 aa9.68□□□□□ -0.86
NKX3-1-201ENST00000380871 SPINK6Q6UWN8 80 aa9.67□□□□□ -0.86
NKX3-1-201ENST00000380871 A0A1B0GVX0 72 aa9.67□□□□□ -0.86
NKX3-1-201ENST00000380871 ZNF861PO60384 105 aa9.66□□□□□ -0.86
NKX3-1-201ENST00000380871 PLAC8Q9NZF1 115 aa9.66□□□□□ -0.86
NKX3-1-201ENST00000380871 CIRBP-AS1Q8TBR5 109 aa9.64□□□□□ -0.87
NKX3-1-201ENST00000380871 LIMD2Q9BT23 127 aa9.63□□□□□ -0.87
NKX3-1-201ENST00000380871 TP53AIP1Q9HCN2 124 aa9.63□□□□□ -0.87
NKX3-1-201ENST00000380871 CDK2AP2O75956 126 aa9.61□□□□□ -0.87
NKX3-1-201ENST00000380871 ZNF706Q9Y5V0 76 aaPredicted RBP9.61□□□□□ -0.87
NKX3-1-201ENST00000380871 SPAG11AQ6PDA7 123 aa9.61□□□□□ -0.87
NKX3-1-201ENST00000380871 DNAH6Q9C0G6 4158 aa9.61□□□□□ -0.87
NKX3-1-201ENST00000380871 MRPL34Q9BQ48 92 aaKnown RBP9.6□□□□□ -0.87
NKX3-1-201ENST00000380871 IGLV7-43P04211 117 aa9.59□□□□□ -0.87
NKX3-1-201ENST00000380871 PMAIP1Q13794 54 aa9.57□□□□□ -0.88
NKX3-1-201ENST00000380871 ALMS1Q8TCU4 4167 aa9.57□□□□□ -0.88
NKX3-1-201ENST00000380871 LCA10Q71F78 164 aa9.57□□□□□ -0.88
NKX3-1-201ENST00000380871 Q5W150 140 aa9.56□□□□□ -0.88
NKX3-1-201ENST00000380871 HRES1P13985 223 aa9.56□□□□□ -0.88
NKX3-1-201ENST00000380871 A6NED7 52 aa9.55□□□□□ -0.88
NKX3-1-201ENST00000380871 KRTAP10-1P60331 282 aa9.55□□□□□ -0.88
NKX3-1-201ENST00000380871 SPTSSBQ8NFR3 76 aa9.55□□□□□ -0.88
NKX3-1-201ENST00000380871 Q75L30 129 aa9.53□□□□□ -0.88
NKX3-1-201ENST00000380871 LOC101927531A0A1B0GV80 90 aa9.53□□□□□ -0.88
NKX3-1-201ENST00000380871 DNAH11Q96DT5 4516 aa9.51□□□□□ -0.89
NKX3-1-201ENST00000380871 PRR26Q8N8Z3 221 aa9.47□□□□□ -0.89
NKX3-1-201ENST00000380871 KRTAP13-3Q3SY46 172 aa9.46□□□□□ -0.9
NKX3-1-201ENST00000380871 LINC01558Q9Y6Z2 57 aa9.46□□□□□ -0.9
NKX3-1-201ENST00000380871 SEC61GP60059 68 aa9.45□□□□□ -0.9
NKX3-1-201ENST00000380871 RETNLBQ9BQ08 111 aa9.45□□□□□ -0.9
NKX3-1-201ENST00000380871 SPINK7P58062 85 aa9.44□□□□□ -0.9
NKX3-1-201ENST00000380871 DNAH5Q8TE73 4624 aa9.44□□□□□ -0.9
NKX3-1-201ENST00000380871 LRP1BQ9NZR2 4599 aa9.38□□□□□ -0.91
NKX3-1-201ENST00000380871 CDC42SE1Q9NRR8 79 aa9.38□□□□□ -0.91
NKX3-1-201ENST00000380871 HYDINQ4G0P3 5121 aa9.38□□□□□ -0.91
NKX3-1-201ENST00000380871 SMR3BP02814 79 aaPredicted RBP9.38□□□□□ -0.91
NKX3-1-201ENST00000380871 ATP11AUNQ6ZP68 121 aa9.37□□□□□ -0.91
NKX3-1-201ENST00000380871 KRTAP13-2Q52LG2 175 aa9.36□□□□□ -0.91
NKX3-1-201ENST00000380871 A6NN06 94 aa9.33□□□□□ -0.92
NKX3-1-201ENST00000380871 SSBP3-AS1Q7Z2R9 100 aa9.33□□□□□ -0.92
NKX3-1-201ENST00000380871 LINC00313P59037 77 aa9.31□□□□□ -0.92
NKX3-1-201ENST00000380871 PLA2G1BP04054 148 aaKnown RBP9.31□□□□□ -0.92
NKX3-1-201ENST00000380871 KTN1-AS1Q86SY8 53 aa9.31□□□□□ -0.92
NKX3-1-201ENST00000380871 Q6ZSA8 131 aa9.3□□□□□ -0.92
NKX3-1-201ENST00000380871 ACYP2P14621 99 aa9.28□□□□□ -0.92
NKX3-1-201ENST00000380871 C8orf87E5RJ46 101 aa9.28□□□□□ -0.92
NKX3-1-201ENST00000380871 VPS13BQ7Z7G8 4022 aa9.27□□□□□ -0.92
NKX3-1-201ENST00000380871 C4orf48Q5BLP8 95 aa9.26□□□□□ -0.93
NKX3-1-201ENST00000380871 PKD1P98161 4303 aa9.25□□□□□ -0.93
NKX3-1-201ENST00000380871 DMAC1Q96GE9 116 aa9.25□□□□□ -0.93
NKX3-1-201ENST00000380871 TYMSOSQ8TAI1 123 aa9.24□□□□□ -0.93
NKX3-1-201ENST00000380871 FAM229AH3BQW9 127 aa9.23□□□□□ -0.93
NKX3-1-201ENST00000380871 KRTAP1-4P0C5Y4 121 aa9.22□□□□□ -0.93
NKX3-1-201ENST00000380871 FAT2Q9NYQ8 4349 aa9.22□□□□□ -0.93
NKX3-1-201ENST00000380871 IGKV2-30P06310 120 aa9.22□□□□□ -0.93
NKX3-1-201ENST00000380871 KRTAP16-1A8MUX0 517 aa9.21□□□□□ -0.94
NKX3-1-201ENST00000380871 IGKV2D-30A0A075B6S6 120 aa9.19□□□□□ -0.94
NKX3-1-201ENST00000380871 RBM12B-AS1Q9P1G2 102 aa9.18□□□□□ -0.94
NKX3-1-201ENST00000380871 A0A1B0GU69 56 aa9.13□□□□□ -0.95
NKX3-1-201ENST00000380871 C7orf65Q6ZTY9 151 aa9.13□□□□□ -0.95
NKX3-1-201ENST00000380871 PKHD1P08F94 4074 aa9.12□□□□□ -0.95
NKX3-1-201ENST00000380871 KRTAP21-3Q3LHN1 58 aa9.12□□□□□ -0.95
NKX3-1-201ENST00000380871 LINC00304Q8N9R0 145 aa9.07□□□□□ -0.96
NKX3-1-201ENST00000380871 PRAC1Q96KF2 57 aa9.06□□□□□ -0.96
NKX3-1-201ENST00000380871 ADM2Q7Z4H4 148 aa9.05□□□□□ -0.96
NKX3-1-201ENST00000380871 C9orf92A6NGG3 77 aa9.03□□□□□ -0.96
NKX3-1-201ENST00000380871 SACSQ9NZJ4 4579 aa9.03□□□□□ -0.96
NKX3-1-201ENST00000380871 SPINK1P00995 79 aa9.02□□□□□ -0.96
NKX3-1-201ENST00000380871 Q8N1X5 172 aa9.02□□□□□ -0.97
NKX3-1-201ENST00000380871 FAT1Q14517 4588 aa9.02□□□□□ -0.97
NKX3-1-201ENST00000380871 DYNC1H1Q14204 4646 aaKnown RBP8.99□□□□□ -0.97
NKX3-1-201ENST00000380871 SPATA8Q6RVD6 105 aa8.99□□□□□ -0.97
NKX3-1-201ENST00000380871 MIR22HGQ0VDD5 57 aa8.98□□□□□ -0.97
NKX3-1-201ENST00000380871 A0A1B0GVY2 172 aa8.95□□□□□ -0.98
NKX3-1-201ENST00000380871 UQCR11O14957 56 aa8.95□□□□□ -0.98
NKX3-1-201ENST00000380871 FLG2Q5D862 2391 aaPredicted RBP8.93□□□□□ -0.98
NKX3-1-201ENST00000380871 DMBT1Q9UGM3 2413 aaPredicted RBP8.9□□□□□ -0.98
NKX3-1-201ENST00000380871 KMT2CQ8NEZ4 4911 aaKnown RBP8.86□□□□□ -0.99
NKX3-1-201ENST00000380871 KRTAP10-4P60372 401 aaPredicted RBP8.83□□□□□ -1
NKX3-1-201ENST00000380871 RYR2Q92736 4967 aa8.77□□□□□ -1.01
NKX3-1-201ENST00000380871 KRTAP3-1Q9BYR8 98 aa8.76□□□□□ -1.01
NKX3-1-201ENST00000380871 APOBP04114 4563 aaKnown RBP8.76□□□□□ -1.01
NKX3-1-201ENST00000380871 PKHD1L1Q86WI1 4243 aa8.75□□□□□ -1.01
NKX3-1-201ENST00000380871 Q5VSD8 79 aa8.73□□□□□ -1.01
NKX3-1-201ENST00000380871 H0YAA0 97 aa8.72□□□□□ -1.01
NKX3-1-201ENST00000380871 CSAG1Q6PB30 78 aa8.71□□□□□ -1.02
NKX3-1-201ENST00000380871 RPS29P62273 56 aaKnown RBP8.7□□□□□ -1.02
NKX3-1-201ENST00000380871 A8MUU9 505 aa8.69□□□□□ -1.02
NKX3-1-201ENST00000380871 C20orf166-AS1Q96NR2 134 aa8.69□□□□□ -1.02
NKX3-1-201ENST00000380871 LRP1Q07954 4544 aaKnown RBP8.68□□□□□ -1.02
NKX3-1-201ENST00000380871 LINC01554Q52M75 96 aa8.66□□□□□ -1.02
NKX3-1-201ENST00000380871 KRTAP17-1Q9BYP8 105 aa8.61□□□□□ -1.03
NKX3-1-201ENST00000380871 A0A1B0GU33 70 aa8.6□□□□□ -1.03
NKX3-1-201ENST00000380871 H1FX-AS1Q4G0G2 97 aa8.55□□□□□ -1.04
NKX3-1-201ENST00000380871 RYR3Q15413 4870 aa8.55□□□□□ -1.04
NKX3-1-201ENST00000380871 KIAA1109Q2LD37 5005 aa8.54□□□□□ -1.04
NKX3-1-201ENST00000380871 HSPG2P98160 4391 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms