RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 UBR5O95071 2799 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-202ENST00000375405 TRANK1O15050 2925 aa2.49□□□□□ -2.01
SCN1A-202ENST00000375405 TENM3Q9P273 2699 aa2.49□□□□□ -2.01
SCN1A-202ENST00000375405 HTTP42858 3142 aa2.49□□□□□ -2.01
SCN1A-202ENST00000375405 SPTBN5Q9NRC6 3674 aaKnown RBP2.49□□□□□ -2.01
SCN1A-202ENST00000375405 PRUNE2Q8WUY3 3088 aa2.48□□□□□ -2.01
SCN1A-202ENST00000375405 KRTAP15-1Q3LI76 137 aa2.47□□□□□ -2.01
SCN1A-202ENST00000375405 WDFY3Q8IZQ1 3526 aa2.47□□□□□ -2.01
SCN1A-202ENST00000375405 DSPP15924 2871 aaKnown RBP2.47□□□□□ -2.01
SCN1A-202ENST00000375405 ASPMQ8IZT6 3477 aa2.47□□□□□ -2.01
SCN1A-202ENST00000375405 KRTAP10-7P60409 375 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-202ENST00000375405 VPS13AQ96RL7 3174 aa2.47□□□□□ -2.01
SCN1A-202ENST00000375405 H0YAA0 97 aa2.46□□□□□ -2.01
SCN1A-202ENST00000375405 VCANP13611 3396 aa2.45□□□□□ -2.02
SCN1A-202ENST00000375405 WDFY4Q6ZS81 3184 aa2.45□□□□□ -2.02
SCN1A-202ENST00000375405 MAP1AP78559 2803 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-202ENST00000375405 FLNCQ14315 2725 aa2.44□□□□□ -2.02
SCN1A-202ENST00000375405 SPEGQ15772 3267 aa2.43□□□□□ -2.02
SCN1A-202ENST00000375405 KRTAP13-2Q52LG2 175 aa2.43□□□□□ -2.02
SCN1A-202ENST00000375405 TENM1Q9UKZ4 2725 aa2.42□□□□□ -2.02
SCN1A-202ENST00000375405 CSMD1Q96PZ7 3565 aa2.4□□□□□ -2.02
SCN1A-202ENST00000375405 XP32Q5T750 250 aa2.4□□□□□ -2.02
SCN1A-202ENST00000375405 COL12A1Q99715 3063 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 KRTAP7-1Q8IUC3 87 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 ATMQ13315 3056 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 CFAP47Q6ZTR5 3102 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 ASH1LQ9NR48 2969 aaKnown RBP2.39□□□□□ -2.03
SCN1A-202ENST00000375405 DMXL2Q8TDJ6 3036 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 NBEAL2Q6ZNJ1 2754 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 CHD7Q9P2D1 2997 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 LAMA5O15230 3695 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 PDZD2O15018 2839 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 LAMA1P25391 3075 aa2.39□□□□□ -2.03
SCN1A-202ENST00000375405 ZFHX4Q86UP3 3567 aa2.38□□□□□ -2.03
SCN1A-202ENST00000375405 MGAQ8IWI9 3026 aa2.38□□□□□ -2.03
SCN1A-202ENST00000375405 KRTAP3-3Q9BYR6 98 aa2.35□□□□□ -2.03
SCN1A-202ENST00000375405 KRTAP3-2Q9BYR7 98 aa2.35□□□□□ -2.03
SCN1A-202ENST00000375405 TPRXLQ17RH7 258 aa2.34□□□□□ -2.03
SCN1A-202ENST00000375405 KALRNO60229 2985 aa2.34□□□□□ -2.03
SCN1A-202ENST00000375405 LOC400499M0QZD8 3231 aa2.34□□□□□ -2.03
SCN1A-202ENST00000375405 DMDP11532 3685 aa2.34□□□□□ -2.03
SCN1A-202ENST00000375405 HIVEP1P15822 2718 aa2.34□□□□□ -2.04
SCN1A-202ENST00000375405 RELNP78509 3460 aa2.34□□□□□ -2.04
SCN1A-202ENST00000375405 LRBAP50851 2863 aa2.33□□□□□ -2.04
SCN1A-202ENST00000375405 NF1P21359 2839 aa2.33□□□□□ -2.04
SCN1A-202ENST00000375405 EYSQ5T1H1 3165 aa2.33□□□□□ -2.04
SCN1A-202ENST00000375405 ADGRG4Q8IZF6 3080 aa2.31□□□□□ -2.04
SCN1A-202ENST00000375405 ZZEF1O43149 2961 aa2.31□□□□□ -2.04
SCN1A-202ENST00000375405 CELSR1Q9NYQ6 3014 aa2.31□□□□□ -2.04
SCN1A-202ENST00000375405 KRTAP10-5P60370 271 aa2.31□□□□□ -2.04
SCN1A-202ENST00000375405 LORP23490 312 aaPredicted RBP2.3□□□□□ -2.04
SCN1A-202ENST00000375405 KRTAP13-1Q8IUC0 172 aa2.29□□□□□ -2.04
SCN1A-202ENST00000375405 FRYLO94915 3013 aa2.29□□□□□ -2.04
SCN1A-202ENST00000375405 SPENQ96T58 3664 aaKnown RBP2.28□□□□□ -2.04
SCN1A-202ENST00000375405 TENM2Q9NT68 2774 aa2.28□□□□□ -2.04
SCN1A-202ENST00000375405 SMG1Q96Q15 3661 aaKnown RBP2.27□□□□□ -2.05
SCN1A-202ENST00000375405 VWFP04275 2813 aa2.26□□□□□ -2.05
SCN1A-202ENST00000375405 KRTAP13-4Q3LI77 160 aa2.26□□□□□ -2.05
SCN1A-202ENST00000375405 ZFHX3Q15911 3703 aa2.26□□□□□ -2.05
SCN1A-202ENST00000375405 ITPR1Q14643 2758 aa2.26□□□□□ -2.05
SCN1A-202ENST00000375405 ZANQ9Y493 2812 aa2.25□□□□□ -2.05
SCN1A-202ENST00000375405 BOD1L1Q8NFC6 3051 aa2.25□□□□□ -2.05
SCN1A-202ENST00000375405 SRRM2Q9UQ35 2752 aaKnown RBP2.25□□□□□ -2.05
SCN1A-202ENST00000375405 NBPF19A0A087WUL8 3843 aa2.24□□□□□ -2.05
SCN1A-202ENST00000375405 PKD1L1Q8TDX9 2849 aa2.24□□□□□ -2.05
SCN1A-202ENST00000375405 CELSR2Q9HCU4 2923 aa2.24□□□□□ -2.05
SCN1A-202ENST00000375405 TGP01266 2768 aa2.24□□□□□ -2.05
SCN1A-202ENST00000375405 SVEP1Q4LDE5 3571 aa2.23□□□□□ -2.05
SCN1A-202ENST00000375405 NIPBLQ6KC79 2804 aaeCLIP2.23□□□□□ -2.05
SCN1A-202ENST00000375405 INE1O15225 51 aa2.23□□□□□ -2.05
SCN1A-202ENST00000375405 MEGF8Q7Z7M0 2845 aa2.22□□□□□ -2.05
SCN1A-202ENST00000375405 TACC2O95359 2948 aa2.22□□□□□ -2.05
SCN1A-202ENST00000375405 KRTAP13-3Q3SY46 172 aa2.21□□□□□ -2.06
SCN1A-202ENST00000375405 KRTAP10-12P60413 245 aa2.2□□□□□ -2.06
SCN1A-202ENST00000375405 DMXL1Q9Y485 3027 aa2.2□□□□□ -2.06
SCN1A-202ENST00000375405 NBEAQ8NFP9 2946 aa2.19□□□□□ -2.06
SCN1A-202ENST00000375405 KRTAP1-4P0C5Y4 121 aa2.18□□□□□ -2.06
SCN1A-202ENST00000375405 LCE2DQ5TA82 110 aaPredicted RBP2.18□□□□□ -2.06
SCN1A-202ENST00000375405 TENM4Q6N022 2769 aa2.17□□□□□ -2.06
SCN1A-202ENST00000375405 KRTAP23-1A1A580 65 aa2.16□□□□□ -2.06
SCN1A-202ENST00000375405 KRTAP21-3Q3LHN1 58 aa2.16□□□□□ -2.06
SCN1A-202ENST00000375405 KRTAP8-1Q8IUC2 63 aa2.16□□□□□ -2.06
SCN1A-202ENST00000375405 CUBNO60494 3623 aa2.14□□□□□ -2.07
SCN1A-202ENST00000375405 OTOGQ6ZRI0 2925 aa2.14□□□□□ -2.07
SCN1A-202ENST00000375405 AKAP9Q99996 3911 aa2.14□□□□□ -2.07
SCN1A-202ENST00000375405 VPS13CQ709C8 3753 aa2.13□□□□□ -2.07
SCN1A-202ENST00000375405 KRTAP12-1P59990 96 aa2.12□□□□□ -2.07
SCN1A-202ENST00000375405 COL7A1Q02388 2944 aa2.12□□□□□ -2.07
SCN1A-202ENST00000375405 DCHS2Q6V1P9 2916 aa2.11□□□□□ -2.07
SCN1A-202ENST00000375405 BSNQ9UPA5 3926 aa2.09□□□□□ -2.08
SCN1A-202ENST00000375405 CSMD2Q7Z408 3487 aa2.09□□□□□ -2.08
SCN1A-202ENST00000375405 KRTAP12-3P60328 96 aa2.08□□□□□ -2.08
SCN1A-202ENST00000375405 KRTAP10-4P60372 401 aaPredicted RBP2.08□□□□□ -2.08
SCN1A-202ENST00000375405 MXRA5Q9NR99 2828 aa2.08□□□□□ -2.08
SCN1A-202ENST00000375405 FBN3Q75N90 2809 aa2.07□□□□□ -2.08
SCN1A-202ENST00000375405 CSMD3Q7Z407 3707 aa2.07□□□□□ -2.08
SCN1A-202ENST00000375405 MUC3AQ02505 3323 aa2.07□□□□□ -2.08
SCN1A-202ENST00000375405 KRTAP19-4Q3LI73 84 aa2.06□□□□□ -2.08
SCN1A-202ENST00000375405 KRTAP3-1Q9BYR8 98 aa2.05□□□□□ -2.08
SCN1A-202ENST00000375405 SPRR2FQ96RM1 72 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms