RNA–Protein interactions for RNA: ENST00000375254.7

UBR4-204, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR4, Length 15,906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-204ENST00000375254 KRTAP13-3Q3SY46 172 aa3.46□□□□□ -1.86
UBR4-204ENST00000375254 ZNF292O60281 2723 aa3.45□□□□□ -1.86
UBR4-204ENST00000375254 TPRXLQ17RH7 258 aa3.45□□□□□ -1.86
UBR4-204ENST00000375254 SPEGQ15772 3267 aa3.44□□□□□ -1.86
UBR4-204ENST00000375254 KRTAP13-4Q3LI77 160 aa3.44□□□□□ -1.86
UBR4-204ENST00000375254 KRTAP13-2Q52LG2 175 aa3.42□□□□□ -1.86
UBR4-204ENST00000375254 PDZD2O15018 2839 aa3.41□□□□□ -1.86
UBR4-204ENST00000375254 DNAH14Q0VDD8 3507 aa3.41□□□□□ -1.86
UBR4-204ENST00000375254 FRYLO94915 3013 aa3.39□□□□□ -1.87
UBR4-204ENST00000375254 KALRNO60229 2985 aa3.38□□□□□ -1.87
UBR4-204ENST00000375254 FLNAP21333 2647 aaKnown RBP3.38□□□□□ -1.87
UBR4-204ENST00000375254 CELSR3Q9NYQ7 3312 aa3.37□□□□□ -1.87
UBR4-204ENST00000375254 VPS13AQ96RL7 3174 aa3.37□□□□□ -1.87
UBR4-204ENST00000375254 KRTAP10-2P60368 255 aa3.37□□□□□ -1.87
UBR4-204ENST00000375254 COL12A1Q99715 3063 aa3.37□□□□□ -1.87
UBR4-204ENST00000375254 TENM3Q9P273 2699 aa3.36□□□□□ -1.87
UBR4-204ENST00000375254 KMT2BQ9UMN6 2715 aaPredicted RBP3.35□□□□□ -1.87
UBR4-204ENST00000375254 XP32Q5T750 250 aa3.35□□□□□ -1.87
UBR4-204ENST00000375254 KRTAP12-1P59990 96 aa3.34□□□□□ -1.87
UBR4-204ENST00000375254 CFAP47Q6ZTR5 3102 aa3.34□□□□□ -1.87
UBR4-204ENST00000375254 KRTAP12-2P59991 146 aa3.33□□□□□ -1.88
UBR4-204ENST00000375254 ADGRG4Q8IZF6 3080 aa3.33□□□□□ -1.88
UBR4-204ENST00000375254 COL6A3P12111 3177 aa3.33□□□□□ -1.88
UBR4-204ENST00000375254 LRBAP50851 2863 aa3.32□□□□□ -1.88
UBR4-204ENST00000375254 APCP25054 2843 aa3.32□□□□□ -1.88
UBR4-204ENST00000375254 ITPR2Q14571 2701 aa3.32□□□□□ -1.88
UBR4-204ENST00000375254 SZT2Q5T011 3432 aa3.32□□□□□ -1.88
UBR4-204ENST00000375254 TRANK1O15050 2925 aa3.3□□□□□ -1.88
UBR4-204ENST00000375254 TACC2O95359 2948 aa3.3□□□□□ -1.88
UBR4-204ENST00000375254 TENM2Q9NT68 2774 aa3.29□□□□□ -1.88
UBR4-204ENST00000375254 HIVEP1P15822 2718 aa3.29□□□□□ -1.88
UBR4-204ENST00000375254 CRYBG3Q68DQ2 2970 aa3.29□□□□□ -1.88
UBR4-204ENST00000375254 ATMQ13315 3056 aa3.28□□□□□ -1.88
UBR4-204ENST00000375254 ZZEF1O43149 2961 aa3.28□□□□□ -1.88
UBR4-204ENST00000375254 BOD1L1Q8NFC6 3051 aa3.28□□□□□ -1.88
UBR4-204ENST00000375254 KRTAP1-4P0C5Y4 121 aa3.26□□□□□ -1.89
UBR4-204ENST00000375254 TGP01266 2768 aa3.25□□□□□ -1.89
UBR4-204ENST00000375254 LAMA1P25391 3075 aa3.25□□□□□ -1.89
UBR4-204ENST00000375254 TENM1Q9UKZ4 2725 aa3.24□□□□□ -1.89
UBR4-204ENST00000375254 TNRC18O15417 2968 aaPredicted RBP3.23□□□□□ -1.89
UBR4-204ENST00000375254 NIPBLQ6KC79 2804 aaeCLIP3.23□□□□□ -1.891e-6■■□□□ 12.7
UBR4-204ENST00000375254 TENM4Q6N022 2769 aa3.23□□□□□ -1.89
UBR4-204ENST00000375254 KRTAP10-6P60371 365 aaPredicted RBP3.23□□□□□ -1.89
UBR4-204ENST00000375254 USP34Q70CQ2 3546 aa3.21□□□□□ -1.9
UBR4-204ENST00000375254 DCHS1Q96JQ0 3298 aa3.2□□□□□ -1.9
UBR4-204ENST00000375254 KRTAP3-1Q9BYR8 98 aa3.19□□□□□ -1.9
UBR4-204ENST00000375254 DMXL1Q9Y485 3027 aa3.18□□□□□ -1.9
UBR4-204ENST00000375254 DCHS2Q6V1P9 2916 aa3.18□□□□□ -1.9
UBR4-204ENST00000375254 LOC400499M0QZD8 3231 aa3.16□□□□□ -1.9
UBR4-204ENST00000375254 NF1P21359 2839 aa3.14□□□□□ -1.91
UBR4-204ENST00000375254 ZANQ9Y493 2812 aa3.13□□□□□ -1.91
UBR4-204ENST00000375254 MYO15AQ9UKN7 3530 aa3.11□□□□□ -1.91
UBR4-204ENST00000375254 FLNCQ14315 2725 aa3.1□□□□□ -1.91
UBR4-204ENST00000375254 SPTBN5Q9NRC6 3674 aaKnown RBP3.09□□□□□ -1.92
UBR4-204ENST00000375254 KRTAP3-2Q9BYR7 98 aa3.08□□□□□ -1.92
UBR4-204ENST00000375254 SRRM2Q9UQ35 2752 aaKnown RBP3.07□□□□□ -1.92
UBR4-204ENST00000375254 ZFHX4Q86UP3 3567 aa3.07□□□□□ -1.92
UBR4-204ENST00000375254 KRTAP10-10P60014 251 aa3.07□□□□□ -1.92
UBR4-204ENST00000375254 CELSR1Q9NYQ6 3014 aa3.06□□□□□ -1.92
UBR4-204ENST00000375254 ZFHX3Q15911 3703 aa3.06□□□□□ -1.92
UBR4-204ENST00000375254 EYSQ5T1H1 3165 aa3.05□□□□□ -1.92
UBR4-204ENST00000375254 RELNP78509 3460 aa3.01□□□□□ -1.93
UBR4-204ENST00000375254 ALMS1Q8TCU4 4167 aa2.99□□□□□ -1.93
UBR4-204ENST00000375254 HUWE1Q7Z6Z7 4374 aaKnown RBP2.98□□□□□ -1.93
UBR4-204ENST00000375254 DNAH11Q96DT5 4516 aa2.98□□□□□ -1.93
UBR4-204ENST00000375254 WDFY3Q8IZQ1 3526 aa2.97□□□□□ -1.93
UBR4-204ENST00000375254 COL7A1Q02388 2944 aa2.96□□□□□ -1.94
UBR4-204ENST00000375254 FBN2P35556 2912 aa2.96□□□□□ -1.94
UBR4-204ENST00000375254 PKD1L1Q8TDX9 2849 aa2.96□□□□□ -1.94
UBR4-204ENST00000375254 ASPMQ8IZT6 3477 aa2.95□□□□□ -1.94
UBR4-204ENST00000375254 KRTAP19-4Q3LI73 84 aa2.95□□□□□ -1.94
UBR4-204ENST00000375254 KRTAP3-3Q9BYR6 98 aa2.95□□□□□ -1.94
UBR4-204ENST00000375254 DNAH10Q8IVF4 4471 aa2.94□□□□□ -1.94
UBR4-204ENST00000375254 DNAH2Q9P225 4427 aa2.94□□□□□ -1.94
UBR4-204ENST00000375254 CSMD1Q96PZ7 3565 aa2.93□□□□□ -1.94
UBR4-204ENST00000375254 MEGF8Q7Z7M0 2845 aa2.92□□□□□ -1.94
UBR4-204ENST00000375254 A0A1B0GVY2 172 aa2.92□□□□□ -1.94
UBR4-204ENST00000375254 SMG1Q96Q15 3661 aaKnown RBP2.91□□□□□ -1.94
UBR4-204ENST00000375254 SVEP1Q4LDE5 3571 aa2.91□□□□□ -1.94
UBR4-204ENST00000375254 KRTAP12-3P60328 96 aa2.9□□□□□ -1.94
UBR4-204ENST00000375254 KRTAP21-3Q3LHN1 58 aa2.9□□□□□ -1.95
UBR4-204ENST00000375254 MUC3AQ02505 3323 aa2.89□□□□□ -1.95
UBR4-204ENST00000375254 OTOGQ6ZRI0 2925 aa2.89□□□□□ -1.95
UBR4-204ENST00000375254 HRNRQ86YZ3 2850 aaPredicted RBP2.88□□□□□ -1.95
UBR4-204ENST00000375254 FBN3Q75N90 2809 aa2.88□□□□□ -1.95
UBR4-204ENST00000375254 CUBNO60494 3623 aa2.86□□□□□ -1.95
UBR4-204ENST00000375254 KRTAP10-12P60413 245 aa2.84□□□□□ -1.95
UBR4-204ENST00000375254 MXRA5Q9NR99 2828 aa2.83□□□□□ -1.96
UBR4-204ENST00000375254 DNAH1Q9P2D7 4330 aa2.83□□□□□ -1.96
UBR4-204ENST00000375254 VWFP04275 2813 aa2.82□□□□□ -1.96
UBR4-204ENST00000375254 NBPF19A0A087WUL8 3843 aa2.81□□□□□ -1.96
UBR4-204ENST00000375254 DNAH8Q96JB1 4490 aa2.8□□□□□ -1.96
UBR4-204ENST00000375254 AKAP9Q99996 3911 aa2.79□□□□□ -1.96
UBR4-204ENST00000375254 SPENQ96T58 3664 aaKnown RBP2.78□□□□□ -1.96
UBR4-204ENST00000375254 LAMA5O15230 3695 aa2.78□□□□□ -1.96
UBR4-204ENST00000375254 MT3P25713 68 aa2.76□□□□□ -1.97
UBR4-204ENST00000375254 DNAH17Q9UFH2 4485 aa2.76□□□□□ -1.97
UBR4-204ENST00000375254 ANK3Q12955 4377 aaKnown RBP2.74□□□□□ -1.97
UBR4-204ENST00000375254 DMDP11532 3685 aa2.72□□□□□ -1.97
UBR4-204ENST00000375254 LCE3AQ5TA76 89 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms