RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 DMXL2Q8TDJ6 3036 aa11.79□□□□□ -0.52
TM9SF3-201ENST00000371142 KRTAP1-4P0C5Y4 121 aa11.79□□□□□ -0.52
TM9SF3-201ENST00000371142 KMT2BQ9UMN6 2715 aaPredicted RBP11.78□□□□□ -0.52
TM9SF3-201ENST00000371142 DNAH14Q0VDD8 3507 aa11.78□□□□□ -0.52
TM9SF3-201ENST00000371142 ATMQ13315 3056 aa11.77□□□□□ -0.53
TM9SF3-201ENST00000371142 KRTAP21-3Q3LHN1 58 aa11.76□□□□□ -0.53
TM9SF3-201ENST00000371142 LRBAP50851 2863 aa11.75□□□□□ -0.53
TM9SF3-201ENST00000371142 HIVEP1P15822 2718 aa11.74□□□□□ -0.53
TM9SF3-201ENST00000371142 COL6A3P12111 3177 aa11.73□□□□□ -0.53
TM9SF3-201ENST00000371142 ASH1LQ9NR48 2969 aaKnown RBP11.72□□□□□ -0.53
TM9SF3-201ENST00000371142 CRYBG3Q68DQ2 2970 aa11.71□□□□□ -0.53
TM9SF3-201ENST00000371142 VCANP13611 3396 aa11.71□□□□□ -0.54
TM9SF3-201ENST00000371142 COL12A1Q99715 3063 aa11.68□□□□□ -0.54
TM9SF3-201ENST00000371142 SZT2Q5T011 3432 aa11.67□□□□□ -0.54
TM9SF3-201ENST00000371142 REV3LO60673 3130 aa11.67□□□□□ -0.54
TM9SF3-201ENST00000371142 LAMA1P25391 3075 aa11.65□□□□□ -0.54
TM9SF3-201ENST00000371142 H0YAA0 97 aa11.62□□□□□ -0.55
TM9SF3-201ENST00000371142 PP632Q6XCG6 107 aa11.62□□□□□ -0.55
TM9SF3-201ENST00000371142 CFAP47Q6ZTR5 3102 aa11.59□□□□□ -0.55
TM9SF3-201ENST00000371142 BOD1L1Q8NFC6 3051 aa11.59□□□□□ -0.55
TM9SF3-201ENST00000371142 ADGRG4Q8IZF6 3080 aa11.58□□□□□ -0.56
TM9SF3-201ENST00000371142 FRYLO94915 3013 aa11.55□□□□□ -0.56
TM9SF3-201ENST00000371142 FLNCQ14315 2725 aa11.53□□□□□ -0.56
TM9SF3-201ENST00000371142 NBEAQ8NFP9 2946 aa11.52□□□□□ -0.57
TM9SF3-201ENST00000371142 KRTAP10-10P60014 251 aa11.51□□□□□ -0.57
TM9SF3-201ENST00000371142 TPRXLQ17RH7 258 aa11.51□□□□□ -0.57
TM9SF3-201ENST00000371142 TENM4Q6N022 2769 aa11.45□□□□□ -0.58
TM9SF3-201ENST00000371142 P0C880 135 aa11.42□□□□□ -0.58
TM9SF3-201ENST00000371142 CELSR2Q9HCU4 2923 aa11.4□□□□□ -0.58
TM9SF3-201ENST00000371142 ZZEF1O43149 2961 aa11.37□□□□□ -0.59
TM9SF3-201ENST00000371142 KRTAP13-3Q3SY46 172 aa11.35□□□□□ -0.59
TM9SF3-201ENST00000371142 EYSQ5T1H1 3165 aa11.34□□□□□ -0.59
TM9SF3-201ENST00000371142 NIPBLQ6KC79 2804 aaeCLIP11.3□□□□□ -0.6
TM9SF3-201ENST00000371142 PRO2289Q9P1D8 64 aa11.28□□□□□ -0.6
TM9SF3-201ENST00000371142 SPEGQ15772 3267 aa11.28□□□□□ -0.6
TM9SF3-201ENST00000371142 DCHS2Q6V1P9 2916 aa11.26□□□□□ -0.61
TM9SF3-201ENST00000371142 USP34Q70CQ2 3546 aa11.21□□□□□ -0.61
TM9SF3-201ENST00000371142 SPTBN5Q9NRC6 3674 aaKnown RBP11.16□□□□□ -0.62
TM9SF3-201ENST00000371142 ZANQ9Y493 2812 aa11.05□□□□□ -0.64
TM9SF3-201ENST00000371142 TNRC18O15417 2968 aaPredicted RBP11.03□□□□□ -0.64
TM9SF3-201ENST00000371142 TENM1Q9UKZ4 2725 aa10.99□□□□□ -0.65
TM9SF3-201ENST00000371142 KRTAP12-2P59991 146 aa10.99□□□□□ -0.65
TM9SF3-201ENST00000371142 HRNRQ86YZ3 2850 aaPredicted RBP10.98□□□□□ -0.65
TM9SF3-201ENST00000371142 TENM2Q9NT68 2774 aa10.96□□□□□ -0.66
TM9SF3-201ENST00000371142 DMXL1Q9Y485 3027 aa10.91□□□□□ -0.66
TM9SF3-201ENST00000371142 FBN2P35556 2912 aa10.91□□□□□ -0.66
TM9SF3-201ENST00000371142 NF1P21359 2839 aa10.91□□□□□ -0.66
TM9SF3-201ENST00000371142 TGP01266 2768 aa10.88□□□□□ -0.67
TM9SF3-201ENST00000371142 TENM3Q9P273 2699 aa10.85□□□□□ -0.67
TM9SF3-201ENST00000371142 CELSR1Q9NYQ6 3014 aa10.83□□□□□ -0.68
TM9SF3-201ENST00000371142 LOC400499M0QZD8 3231 aa10.76□□□□□ -0.69
TM9SF3-201ENST00000371142 KRTAP13-4Q3LI77 160 aa10.75□□□□□ -0.69
TM9SF3-201ENST00000371142 KRTAP12-1P59990 96 aa10.71□□□□□ -0.69
TM9SF3-201ENST00000371142 WDFY3Q8IZQ1 3526 aa10.61□□□□□ -0.71
TM9SF3-201ENST00000371142 MYO15AQ9UKN7 3530 aa10.61□□□□□ -0.71
TM9SF3-201ENST00000371142 KRTAP3-1Q9BYR8 98 aa10.61□□□□□ -0.71
TM9SF3-201ENST00000371142 PKD1L1Q8TDX9 2849 aa10.53□□□□□ -0.72
TM9SF3-201ENST00000371142 RELNP78509 3460 aa10.48□□□□□ -0.73
TM9SF3-201ENST00000371142 KRTAP15-1Q3LI76 137 aa10.46□□□□□ -0.74
TM9SF3-201ENST00000371142 ASPMQ8IZT6 3477 aa10.45□□□□□ -0.74
TM9SF3-201ENST00000371142 VWFP04275 2813 aa10.44□□□□□ -0.74
TM9SF3-201ENST00000371142 MXRA5Q9NR99 2828 aa10.43□□□□□ -0.74
TM9SF3-201ENST00000371142 PDZD2O15018 2839 aa10.39□□□□□ -0.75
TM9SF3-201ENST00000371142 NBPF19A0A087WUL8 3843 aa10.36□□□□□ -0.75
TM9SF3-201ENST00000371142 DCHS1Q96JQ0 3298 aa10.3□□□□□ -0.76
TM9SF3-201ENST00000371142 KRTAP10-6P60371 365 aaPredicted RBP10.29□□□□□ -0.76
TM9SF3-201ENST00000371142 ZFHX4Q86UP3 3567 aa10.25□□□□□ -0.77
TM9SF3-201ENST00000371142 CSMD1Q96PZ7 3565 aa10.17□□□□□ -0.78
TM9SF3-201ENST00000371142 LAMA5O15230 3695 aa10.06□□□□□ -0.8
TM9SF3-201ENST00000371142 MT1HL1P0DM35 61 aa10.01□□□□□ -0.81
TM9SF3-201ENST00000371142 CRCT1Q9UGL9 99 aa10.01□□□□□ -0.81
TM9SF3-201ENST00000371142 ANK3Q12955 4377 aaKnown RBP9.99□□□□□ -0.81
TM9SF3-201ENST00000371142 FBN1P35555 2871 aaKnown RBP9.93□□□□□ -0.82
TM9SF3-201ENST00000371142 KRTAP10-12P60413 245 aa9.92□□□□□ -0.82
TM9SF3-201ENST00000371142 ZFHX3Q15911 3703 aa9.9□□□□□ -0.82
TM9SF3-201ENST00000371142 KRTAP3-3Q9BYR6 98 aa9.9□□□□□ -0.83
TM9SF3-201ENST00000371142 KRTAP3-2Q9BYR7 98 aa9.89□□□□□ -0.83
TM9SF3-201ENST00000371142 FBN3Q75N90 2809 aa9.88□□□□□ -0.83
TM9SF3-201ENST00000371142 SMG1Q96Q15 3661 aaKnown RBP9.85□□□□□ -0.83
TM9SF3-201ENST00000371142 MEGF8Q7Z7M0 2845 aa9.83□□□□□ -0.84
TM9SF3-201ENST00000371142 MUC3AQ02505 3323 aa9.82□□□□□ -0.84
TM9SF3-201ENST00000371142 SRRM2Q9UQ35 2752 aaKnown RBP9.82□□□□□ -0.84
TM9SF3-201ENST00000371142 OTOGQ6ZRI0 2925 aa9.82□□□□□ -0.84
TM9SF3-201ENST00000371142 KRTAP4-5Q9BYR2 181 aa9.78□□□□□ -0.84
TM9SF3-201ENST00000371142 INE1O15225 51 aa9.71□□□□□ -0.85
TM9SF3-201ENST00000371142 DMDP11532 3685 aa9.69□□□□□ -0.86
TM9SF3-201ENST00000371142 SVEP1Q4LDE5 3571 aa9.69□□□□□ -0.86
TM9SF3-201ENST00000371142 KRTAP10-4P60372 401 aaPredicted RBP9.64□□□□□ -0.87
TM9SF3-201ENST00000371142 CSMD2Q7Z408 3487 aa9.63□□□□□ -0.87
TM9SF3-201ENST00000371142 COL7A1Q02388 2944 aa9.63□□□□□ -0.87
TM9SF3-201ENST00000371142 KRTAP12-3P60328 96 aa9.62□□□□□ -0.87
TM9SF3-201ENST00000371142 TRRAPQ9Y4A5 3859 aa9.59□□□□□ -0.87
TM9SF3-201ENST00000371142 HUWE1Q7Z6Z7 4374 aaKnown RBP9.59□□□□□ -0.87
TM9SF3-201ENST00000371142 LCE3AQ5TA76 89 aa9.57□□□□□ -0.88
TM9SF3-201ENST00000371142 CUBNO60494 3623 aa9.53□□□□□ -0.88
TM9SF3-201ENST00000371142 SPENQ96T58 3664 aaKnown RBP9.48□□□□□ -0.89
TM9SF3-201ENST00000371142 LORP23490 312 aaPredicted RBP9.45□□□□□ -0.9
TM9SF3-201ENST00000371142 ALMS1Q8TCU4 4167 aa9.37□□□□□ -0.91
TM9SF3-201ENST00000371142 KRTAP23-1A1A580 65 aa9.31□□□□□ -0.92
TM9SF3-201ENST00000371142 KRTAP10-5P60370 271 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms