RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 DMXL1Q9Y485 3027 aa10.75□□□□□ -0.69
CLIP2-202ENST00000361545 KRTAP21-3Q3LHN1 58 aa10.73□□□□□ -0.69
CLIP2-202ENST00000361545 KRTAP7-1Q8IUC3 87 aa10.73□□□□□ -0.69
CLIP2-202ENST00000361545 NOTCH2NLQ7Z3S9 236 aa10.72□□□□□ -0.69
CLIP2-202ENST00000361545 ZANQ9Y493 2812 aa10.7□□□□□ -0.7
CLIP2-202ENST00000361545 USP34Q70CQ2 3546 aa10.69□□□□□ -0.7
CLIP2-202ENST00000361545 SPEGQ15772 3267 aa10.69□□□□□ -0.7
CLIP2-202ENST00000361545 DCHS2Q6V1P9 2916 aa10.68□□□□□ -0.7
CLIP2-202ENST00000361545 M0QZ58 72 aa10.67□□□□□ -0.7
CLIP2-202ENST00000361545 KRTAP29-1A8MX34 341 aaPredicted RBP10.66□□□□□ -0.7
CLIP2-202ENST00000361545 KRTAP13-2Q52LG2 175 aa10.62□□□□□ -0.71
CLIP2-202ENST00000361545 ADM2Q7Z4H4 148 aa10.58□□□□□ -0.72
CLIP2-202ENST00000361545 RPS29P62273 56 aaKnown RBP10.55□□□□□ -0.72
CLIP2-202ENST00000361545 RPL37P61927 97 aaKnown RBP10.54□□□□□ -0.72
CLIP2-202ENST00000361545 ASB16-AS1Q495Z4 193 aa10.54□□□□□ -0.72
CLIP2-202ENST00000361545 KRTAP13-1Q8IUC0 172 aa10.53□□□□□ -0.72
CLIP2-202ENST00000361545 H1FX-AS1Q4G0G2 97 aa10.52□□□□□ -0.73
CLIP2-202ENST00000361545 SPATA8Q6RVD6 105 aa10.49□□□□□ -0.73
CLIP2-202ENST00000361545 LOC400499M0QZD8 3231 aa10.47□□□□□ -0.73
CLIP2-202ENST00000361545 A0A0A0MQY5 61 aa10.46□□□□□ -0.73
CLIP2-202ENST00000361545 PLAC4Q8WY50 150 aa10.46□□□□□ -0.74
CLIP2-202ENST00000361545 NF1P21359 2839 aa10.44□□□□□ -0.74
CLIP2-202ENST00000361545 HRNRQ86YZ3 2850 aaPredicted RBP10.42□□□□□ -0.74
CLIP2-202ENST00000361545 ROMO1P60602 79 aa10.4□□□□□ -0.74
CLIP2-202ENST00000361545 FBN2P35556 2912 aa10.4□□□□□ -0.75
CLIP2-202ENST00000361545 A6NN06 94 aa10.36□□□□□ -0.75
CLIP2-202ENST00000361545 MYO15AQ9UKN7 3530 aa10.33□□□□□ -0.76
CLIP2-202ENST00000361545 TENM3Q9P273 2699 aa10.31□□□□□ -0.76
CLIP2-202ENST00000361545 C20orf166-AS1Q96NR2 134 aa10.3□□□□□ -0.76
CLIP2-202ENST00000361545 TENM1Q9UKZ4 2725 aa10.3□□□□□ -0.76
CLIP2-202ENST00000361545 A8MUU9 505 aa10.28□□□□□ -0.76
CLIP2-202ENST00000361545 A8MU10 97 aa10.26□□□□□ -0.77
CLIP2-202ENST00000361545 TENM2Q9NT68 2774 aa10.21□□□□□ -0.77
CLIP2-202ENST00000361545 MXRA5Q9NR99 2828 aa10.16□□□□□ -0.78
CLIP2-202ENST00000361545 KRTAP16-1A8MUX0 517 aa10.15□□□□□ -0.78
CLIP2-202ENST00000361545 DCHS1Q96JQ0 3298 aa10.15□□□□□ -0.78
CLIP2-202ENST00000361545 KRTAP25-1Q3LHN0 102 aa10.15□□□□□ -0.78
CLIP2-202ENST00000361545 KRTAP1-4P0C5Y4 121 aa10.14□□□□□ -0.79
CLIP2-202ENST00000361545 RELNP78509 3460 aa10.13□□□□□ -0.79
CLIP2-202ENST00000361545 PKD1L1Q8TDX9 2849 aa10.12□□□□□ -0.79
CLIP2-202ENST00000361545 CELSR1Q9NYQ6 3014 aa10.11□□□□□ -0.79
CLIP2-202ENST00000361545 XP32Q5T750 250 aa10.04□□□□□ -0.8
CLIP2-202ENST00000361545 WDFY3Q8IZQ1 3526 aa9.99□□□□□ -0.81
CLIP2-202ENST00000361545 NDUFAF8A1L188 74 aa9.98□□□□□ -0.81
CLIP2-202ENST00000361545 A0A1B0GVY2 172 aa9.92□□□□□ -0.82
CLIP2-202ENST00000361545 VWFP04275 2813 aa9.91□□□□□ -0.82
CLIP2-202ENST00000361545 LAMA5O15230 3695 aa9.87□□□□□ -0.83
CLIP2-202ENST00000361545 TPRXLQ17RH7 258 aa9.85□□□□□ -0.83
CLIP2-202ENST00000361545 ASPMQ8IZT6 3477 aa9.82□□□□□ -0.84
CLIP2-202ENST00000361545 TNP1P09430 55 aa9.78□□□□□ -0.84
CLIP2-202ENST00000361545 PDZD2O15018 2839 aa9.78□□□□□ -0.84
CLIP2-202ENST00000361545 NBPF19A0A087WUL8 3843 aa9.76□□□□□ -0.85
CLIP2-202ENST00000361545 TGP01266 2768 aa9.76□□□□□ -0.85
CLIP2-202ENST00000361545 FBN1P35555 2871 aaKnown RBP9.73□□□□□ -0.85
CLIP2-202ENST00000361545 KRTAP13-3Q3SY46 172 aa9.72□□□□□ -0.85
CLIP2-202ENST00000361545 KRTAP10-8P60410 259 aa9.71□□□□□ -0.85
CLIP2-202ENST00000361545 ZFHX4Q86UP3 3567 aa9.71□□□□□ -0.86
CLIP2-202ENST00000361545 ZFHX3Q15911 3703 aa9.66□□□□□ -0.86
CLIP2-202ENST00000361545 KRTAP10-10P60014 251 aa9.66□□□□□ -0.86
CLIP2-202ENST00000361545 OTOGQ6ZRI0 2925 aa9.64□□□□□ -0.87
CLIP2-202ENST00000361545 MUC3AQ02505 3323 aa9.61□□□□□ -0.87
CLIP2-202ENST00000361545 DMDP11532 3685 aa9.57□□□□□ -0.88
CLIP2-202ENST00000361545 SRRM2Q9UQ35 2752 aaKnown RBP9.54□□□□□ -0.88
CLIP2-202ENST00000361545 C10orf95Q9H7T3 257 aa9.5□□□□□ -0.89
CLIP2-202ENST00000361545 H0YAA0 97 aa9.44□□□□□ -0.9
CLIP2-202ENST00000361545 P0C880 135 aa9.44□□□□□ -0.9
CLIP2-202ENST00000361545 CSMD1Q96PZ7 3565 aa9.38□□□□□ -0.91
CLIP2-202ENST00000361545 SMG1Q96Q15 3661 aaKnown RBP9.35□□□□□ -0.91
CLIP2-202ENST00000361545 PP632Q6XCG6 107 aa9.33□□□□□ -0.92
CLIP2-202ENST00000361545 PRO2289Q9P1D8 64 aa9.33□□□□□ -0.92
CLIP2-202ENST00000361545 CSMD2Q7Z408 3487 aa9.31□□□□□ -0.92
CLIP2-202ENST00000361545 ANK3Q12955 4377 aaKnown RBP9.22□□□□□ -0.93
CLIP2-202ENST00000361545 FBN3Q75N90 2809 aa9.19□□□□□ -0.94
CLIP2-202ENST00000361545 SVEP1Q4LDE5 3571 aa9.19□□□□□ -0.94
CLIP2-202ENST00000361545 CUBNO60494 3623 aa9.13□□□□□ -0.95
CLIP2-202ENST00000361545 TRRAPQ9Y4A5 3859 aa9.08□□□□□ -0.96
CLIP2-202ENST00000361545 SPENQ96T58 3664 aaKnown RBP9.05□□□□□ -0.96
CLIP2-202ENST00000361545 COL7A1Q02388 2944 aa9.05□□□□□ -0.96
CLIP2-202ENST00000361545 MEGF8Q7Z7M0 2845 aa9□□□□□ -0.97
CLIP2-202ENST00000361545 KRTAP12-2P59991 146 aa8.98□□□□□ -0.97
CLIP2-202ENST00000361545 KRTAP3-1Q9BYR8 98 aa8.94□□□□□ -0.98
CLIP2-202ENST00000361545 MT1HL1P0DM35 61 aa8.88□□□□□ -0.99
CLIP2-202ENST00000361545 KRTAP4-5Q9BYR2 181 aa8.81□□□□□ -1
CLIP2-202ENST00000361545 KRTAP12-1P59990 96 aa8.8□□□□□ -1
CLIP2-202ENST00000361545 KRTAP13-4Q3LI77 160 aa8.76□□□□□ -1.01
CLIP2-202ENST00000361545 BSNQ9UPA5 3926 aa8.74□□□□□ -1.01
CLIP2-202ENST00000361545 HUWE1Q7Z6Z7 4374 aaKnown RBP8.66□□□□□ -1.02
CLIP2-202ENST00000361545 KRTAP10-4P60372 401 aaPredicted RBP8.63□□□□□ -1.03
CLIP2-202ENST00000361545 KRTAP10-6P60371 365 aaPredicted RBP8.6□□□□□ -1.03
CLIP2-202ENST00000361545 VPS13CQ709C8 3753 aa8.49□□□□□ -1.05
CLIP2-202ENST00000361545 KRTAP15-1Q3LI76 137 aa8.45□□□□□ -1.06
CLIP2-202ENST00000361545 KRTAP3-3Q9BYR6 98 aa8.37□□□□□ -1.07
CLIP2-202ENST00000361545 ALMS1Q8TCU4 4167 aa8.32□□□□□ -1.08
CLIP2-202ENST00000361545 KRTAP3-2Q9BYR7 98 aa8.31□□□□□ -1.08
CLIP2-202ENST00000361545 CSMD3Q7Z407 3707 aa8.28□□□□□ -1.08
CLIP2-202ENST00000361545 DNAH9Q9NYC9 4486 aa8.26□□□□□ -1.09
CLIP2-202ENST00000361545 ZNF469Q96JG9 3925 aaPredicted RBP8.22□□□□□ -1.09
CLIP2-202ENST00000361545 KRTAP10-12P60413 245 aa8.21□□□□□ -1.09
CLIP2-202ENST00000361545 DNAH5Q8TE73 4624 aa8.21□□□□□ -1.09
CLIP2-202ENST00000361545 DNHD1Q96M86 4753 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 172.4 ms