RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 SMG1Q96Q15 3661 aaKnown RBP8.19□□□□□ -1.1
VCP-201ENST00000358901 SPENQ96T58 3664 aaKnown RBP8.13□□□□□ -1.11
VCP-201ENST00000358901 LINC00483Q53H64 154 aa8.13□□□□□ -1.11
VCP-201ENST00000358901 KRTAP10-2P60368 255 aa8.12□□□□□ -1.11
VCP-201ENST00000358901 KRTAP11-1Q8IUC1 163 aa8.11□□□□□ -1.11
VCP-201ENST00000358901 Q6ZR54 194 aa8.11□□□□□ -1.11
VCP-201ENST00000358901 KRTAP10-1P60331 282 aa8.1□□□□□ -1.11
VCP-201ENST00000358901 Q6ZSA8 131 aa8.1□□□□□ -1.11
VCP-201ENST00000358901 KRTAP7-1Q8IUC3 87 aa8.1□□□□□ -1.11
VCP-201ENST00000358901 A0A087X002 238 aa8.09□□□□□ -1.11
VCP-201ENST00000358901 NOTCH2NLQ7Z3S9 236 aa8.09□□□□□ -1.11
VCP-201ENST00000358901 DMAC1Q96GE9 116 aa8.08□□□□□ -1.12
VCP-201ENST00000358901 TENM3Q9P273 2699 aa8.06□□□□□ -1.12
VCP-201ENST00000358901 MXRA5Q9NR99 2828 aa8.05□□□□□ -1.12
VCP-201ENST00000358901 CSAG1Q6PB30 78 aa8.05□□□□□ -1.12
VCP-201ENST00000358901 LCE6AA0A183 80 aa7.99□□□□□ -1.13
VCP-201ENST00000358901 Q6ZRN7 208 aaPredicted RBP7.96□□□□□ -1.14
VCP-201ENST00000358901 CAMK2N1Q7Z7J9 78 aa7.96□□□□□ -1.14
VCP-201ENST00000358901 S4R3F8 94 aa7.96□□□□□ -1.14
VCP-201ENST00000358901 CSMD1Q96PZ7 3565 aa7.95□□□□□ -1.14
VCP-201ENST00000358901 CELSR1Q9NYQ6 3014 aa7.92□□□□□ -1.14
VCP-201ENST00000358901 LUZP6Q538Z0 58 aa7.9□□□□□ -1.15
VCP-201ENST00000358901 RPL37P61927 97 aaKnown RBP7.89□□□□□ -1.15
VCP-201ENST00000358901 KRTAP13-1Q8IUC0 172 aa7.88□□□□□ -1.15
VCP-201ENST00000358901 TENM1Q9UKZ4 2725 aa7.88□□□□□ -1.15
VCP-201ENST00000358901 SVEP1Q4LDE5 3571 aa7.88□□□□□ -1.15
VCP-201ENST00000358901 CUBNO60494 3623 aa7.87□□□□□ -1.15
VCP-201ENST00000358901 H1FX-AS1Q4G0G2 97 aa7.87□□□□□ -1.15
VCP-201ENST00000358901 A8MU10 97 aa7.87□□□□□ -1.15
VCP-201ENST00000358901 SPATA8Q6RVD6 105 aa7.85□□□□□ -1.15
VCP-201ENST00000358901 R4GN34 69 aa7.85□□□□□ -1.15
VCP-201ENST00000358901 Q5VSD8 79 aa7.85□□□□□ -1.15
VCP-201ENST00000358901 ASB16-AS1Q495Z4 193 aa7.85□□□□□ -1.15
VCP-201ENST00000358901 H3BS24 57 aa7.82□□□□□ -1.16
VCP-201ENST00000358901 PKD1L1Q8TDX9 2849 aa7.81□□□□□ -1.16
VCP-201ENST00000358901 KRTAP13-2Q52LG2 175 aa7.8□□□□□ -1.16
VCP-201ENST00000358901 ROMO1P60602 79 aa7.8□□□□□ -1.16
VCP-201ENST00000358901 A6NN06 94 aa7.78□□□□□ -1.16
VCP-201ENST00000358901 PDZD2O15018 2839 aa7.78□□□□□ -1.16
VCP-201ENST00000358901 M0R2T5 61 aa7.75□□□□□ -1.17
VCP-201ENST00000358901 SEC61BP60468 96 aaKnown RBP7.72□□□□□ -1.17
VCP-201ENST00000358901 BSNQ9UPA5 3926 aa7.72□□□□□ -1.17
VCP-201ENST00000358901 M0QZ58 72 aa7.72□□□□□ -1.17
VCP-201ENST00000358901 ADM2Q7Z4H4 148 aa7.71□□□□□ -1.18
VCP-201ENST00000358901 FBN1P35555 2871 aaKnown RBP7.68□□□□□ -1.18
VCP-201ENST00000358901 VWFP04275 2813 aa7.66□□□□□ -1.18
VCP-201ENST00000358901 RPS29P62273 56 aaKnown RBP7.66□□□□□ -1.18
VCP-201ENST00000358901 TGP01266 2768 aa7.65□□□□□ -1.19
VCP-201ENST00000358901 CSMD2Q7Z408 3487 aa7.65□□□□□ -1.19
VCP-201ENST00000358901 ZFHX3Q15911 3703 aa7.64□□□□□ -1.19
VCP-201ENST00000358901 NBPF19A0A087WUL8 3843 aa7.64□□□□□ -1.19
VCP-201ENST00000358901 TENM2Q9NT68 2774 aa7.61□□□□□ -1.19
VCP-201ENST00000358901 OTOGQ6ZRI0 2925 aa7.6□□□□□ -1.19
VCP-201ENST00000358901 KRTAP25-1Q3LHN0 102 aa7.57□□□□□ -1.2
VCP-201ENST00000358901 SRRM2Q9UQ35 2752 aaKnown RBP7.52□□□□□ -1.21
VCP-201ENST00000358901 A0A0A0MQY5 61 aa7.5□□□□□ -1.21
VCP-201ENST00000358901 A8MUU9 505 aa7.49□□□□□ -1.21
VCP-201ENST00000358901 KRTAP1-4P0C5Y4 121 aa7.46□□□□□ -1.21
VCP-201ENST00000358901 C20orf166-AS1Q96NR2 134 aa7.45□□□□□ -1.22
VCP-201ENST00000358901 VPS13CQ709C8 3753 aa7.42□□□□□ -1.22
VCP-201ENST00000358901 PLAC4Q8WY50 150 aa7.34□□□□□ -1.23
VCP-201ENST00000358901 NDUFAF8A1L188 74 aa7.32□□□□□ -1.24
VCP-201ENST00000358901 KRTAP16-1A8MUX0 517 aa7.31□□□□□ -1.24
VCP-201ENST00000358901 H0YAA0 97 aa7.29□□□□□ -1.24
VCP-201ENST00000358901 FBN3Q75N90 2809 aa7.28□□□□□ -1.24
VCP-201ENST00000358901 XP32Q5T750 250 aa7.24□□□□□ -1.25
VCP-201ENST00000358901 C10orf95Q9H7T3 257 aa7.22□□□□□ -1.25
VCP-201ENST00000358901 KRTAP13-3Q3SY46 172 aa7.19□□□□□ -1.26
VCP-201ENST00000358901 KRTAP21-3Q3LHN1 58 aa7.18□□□□□ -1.26
VCP-201ENST00000358901 TRRAPQ9Y4A5 3859 aa7.16□□□□□ -1.26
VCP-201ENST00000358901 COL7A1Q02388 2944 aa7.15□□□□□ -1.27
VCP-201ENST00000358901 ZNF469Q96JG9 3925 aaPredicted RBP7.15□□□□□ -1.27
VCP-201ENST00000358901 TNP1P09430 55 aa7.12□□□□□ -1.27
VCP-201ENST00000358901 MEGF8Q7Z7M0 2845 aa7.11□□□□□ -1.27
VCP-201ENST00000358901 P0C880 135 aa7.1□□□□□ -1.27
VCP-201ENST00000358901 TPRXLQ17RH7 258 aa7.01□□□□□ -1.29
VCP-201ENST00000358901 A0A1B0GVY2 172 aa6.97□□□□□ -1.29
VCP-201ENST00000358901 AKAP9Q99996 3911 aa6.96□□□□□ -1.29
VCP-201ENST00000358901 PP632Q6XCG6 107 aa6.96□□□□□ -1.3
VCP-201ENST00000358901 KRTAP10-8P60410 259 aa6.94□□□□□ -1.3
VCP-201ENST00000358901 ANK3Q12955 4377 aaKnown RBP6.91□□□□□ -1.3
VCP-201ENST00000358901 KRTAP3-1Q9BYR8 98 aa6.85□□□□□ -1.31
VCP-201ENST00000358901 KRTAP12-2P59991 146 aa6.8□□□□□ -1.32
VCP-201ENST00000358901 KRTAP10-10P60014 251 aa6.74□□□□□ -1.33
VCP-201ENST00000358901 KRTAP12-1P59990 96 aa6.71□□□□□ -1.34
VCP-201ENST00000358901 CSMD3Q7Z407 3707 aa6.69□□□□□ -1.34
VCP-201ENST00000358901 KRTAP13-4Q3LI77 160 aa6.65□□□□□ -1.35
VCP-201ENST00000358901 KRTAP10-6P60371 365 aaPredicted RBP6.64□□□□□ -1.35
VCP-201ENST00000358901 DNHD1Q96M86 4753 aa6.58□□□□□ -1.36
VCP-201ENST00000358901 PRO2289Q9P1D8 64 aa6.51□□□□□ -1.37
VCP-201ENST00000358901 KRTAP3-2Q9BYR7 98 aa6.42□□□□□ -1.38
VCP-201ENST00000358901 KRTAP3-3Q9BYR6 98 aa6.42□□□□□ -1.38
VCP-201ENST00000358901 MT1HL1P0DM35 61 aa6.4□□□□□ -1.39
VCP-201ENST00000358901 HUWE1Q7Z6Z7 4374 aaKnown RBP6.36□□□□□ -1.39
VCP-201ENST00000358901 ANK2Q01484 3957 aa6.35□□□□□ -1.39
VCP-201ENST00000358901 KRTAP10-4P60372 401 aaPredicted RBP6.34□□□□□ -1.39
VCP-201ENST00000358901 DNAH10Q8IVF4 4471 aa6.3□□□□□ -1.4
VCP-201ENST00000358901 PRKDCP78527 4128 aaKnown RBP6.23□□□□□ -1.41
VCP-201ENST00000358901 KRTAP15-1Q3LI76 137 aa6.21□□□□□ -1.42
VCP-201ENST00000358901 CMYA5Q8N3K9 4069 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms