RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 NOTCH2NLQ7Z3S9 236 aa5.76□□□□□ -1.49
CLIP1-202ENST00000358808 KRTAP4-16G5E9R7 235 aaPredicted RBP5.76□□□□□ -1.49
CLIP1-202ENST00000358808 RPS29P62273 56 aaKnown RBP5.76□□□□□ -1.49
CLIP1-202ENST00000358808 ASPMQ8IZT6 3477 aa5.75□□□□□ -1.49
CLIP1-202ENST00000358808 LOC400499M0QZD8 3231 aa5.74□□□□□ -1.49
CLIP1-202ENST00000358808 DMXL1Q9Y485 3027 aa5.73□□□□□ -1.49
CLIP1-202ENST00000358808 DMXL2Q8TDJ6 3036 aa5.73□□□□□ -1.49
CLIP1-202ENST00000358808 KRTAP10-8P60410 259 aa5.73□□□□□ -1.49
CLIP1-202ENST00000358808 ASH1LQ9NR48 2969 aaKnown RBP5.71□□□□□ -1.49
CLIP1-202ENST00000358808 ITPR1Q14643 2758 aa5.7□□□□□ -1.5
CLIP1-202ENST00000358808 KALRNO60229 2985 aa5.69□□□□□ -1.5
CLIP1-202ENST00000358808 TACC2O95359 2948 aa5.69□□□□□ -1.5
CLIP1-202ENST00000358808 NBEAQ8NFP9 2946 aa5.68□□□□□ -1.5
CLIP1-202ENST00000358808 LAMA5O15230 3695 aa5.67□□□□□ -1.5
CLIP1-202ENST00000358808 Q6ZRN7 208 aaPredicted RBP5.67□□□□□ -1.5
CLIP1-202ENST00000358808 A0A1B0GVY2 172 aa5.66□□□□□ -1.5
CLIP1-202ENST00000358808 DCHS1Q96JQ0 3298 aa5.66□□□□□ -1.5
CLIP1-202ENST00000358808 A6NN06 94 aa5.66□□□□□ -1.5
CLIP1-202ENST00000358808 COL12A1Q99715 3063 aa5.66□□□□□ -1.5
CLIP1-202ENST00000358808 KMT2BQ9UMN6 2715 aaPredicted RBP5.66□□□□□ -1.5
CLIP1-202ENST00000358808 ATMQ13315 3056 aa5.66□□□□□ -1.5
CLIP1-202ENST00000358808 CFAP47Q6ZTR5 3102 aa5.65□□□□□ -1.5
CLIP1-202ENST00000358808 KRTAP11-1Q8IUC1 163 aa5.63□□□□□ -1.51
CLIP1-202ENST00000358808 ZZEF1O43149 2961 aa5.63□□□□□ -1.51
CLIP1-202ENST00000358808 P0C880 135 aa5.62□□□□□ -1.51
CLIP1-202ENST00000358808 KRTAP13-2Q52LG2 175 aa5.62□□□□□ -1.51
CLIP1-202ENST00000358808 ADGRG4Q8IZF6 3080 aa5.6□□□□□ -1.51
CLIP1-202ENST00000358808 APCP25054 2843 aa5.6□□□□□ -1.51
CLIP1-202ENST00000358808 HIVEP1P15822 2718 aa5.59□□□□□ -1.51
CLIP1-202ENST00000358808 UTP20O75691 2785 aaKnown RBP5.59□□□□□ -1.51
CLIP1-202ENST00000358808 KRTAP7-1Q8IUC3 87 aa5.57□□□□□ -1.52
CLIP1-202ENST00000358808 ITPR2Q14571 2701 aa5.57□□□□□ -1.52
CLIP1-202ENST00000358808 PP632Q6XCG6 107 aa5.57□□□□□ -1.52
CLIP1-202ENST00000358808 KRTAP10-10P60014 251 aa5.54□□□□□ -1.52
CLIP1-202ENST00000358808 PRO2289Q9P1D8 64 aa5.54□□□□□ -1.52
CLIP1-202ENST00000358808 FLNCQ14315 2725 aa5.54□□□□□ -1.52
CLIP1-202ENST00000358808 ZFHX4Q86UP3 3567 aa5.53□□□□□ -1.52
CLIP1-202ENST00000358808 LRBAP50851 2863 aa5.53□□□□□ -1.52
CLIP1-202ENST00000358808 RELNP78509 3460 aa5.51□□□□□ -1.53
CLIP1-202ENST00000358808 CELSR2Q9HCU4 2923 aa5.51□□□□□ -1.53
CLIP1-202ENST00000358808 KRTAP13-1Q8IUC0 172 aa5.48□□□□□ -1.53
CLIP1-202ENST00000358808 NIPBLQ6KC79 2804 aaeCLIP5.44□□□□□ -1.541e-6■□□□□ 9
CLIP1-202ENST00000358808 XP32Q5T750 250 aa5.44□□□□□ -1.54
CLIP1-202ENST00000358808 TENM4Q6N022 2769 aa5.42□□□□□ -1.54
CLIP1-202ENST00000358808 CRYBG3Q68DQ2 2970 aa5.4□□□□□ -1.54
CLIP1-202ENST00000358808 DCHS2Q6V1P9 2916 aa5.39□□□□□ -1.55
CLIP1-202ENST00000358808 SMG1Q96Q15 3661 aaKnown RBP5.38□□□□□ -1.55
CLIP1-202ENST00000358808 TENM3Q9P273 2699 aa5.37□□□□□ -1.55
CLIP1-202ENST00000358808 ZANQ9Y493 2812 aa5.32□□□□□ -1.56
CLIP1-202ENST00000358808 TPRXLQ17RH7 258 aa5.32□□□□□ -1.56
CLIP1-202ENST00000358808 HRNRQ86YZ3 2850 aaPredicted RBP5.29□□□□□ -1.56
CLIP1-202ENST00000358808 NF1P21359 2839 aa5.28□□□□□ -1.56
CLIP1-202ENST00000358808 KRTAP1-4P0C5Y4 121 aa5.28□□□□□ -1.56
CLIP1-202ENST00000358808 H0YAA0 97 aa5.26□□□□□ -1.57
CLIP1-202ENST00000358808 SVEP1Q4LDE5 3571 aa5.25□□□□□ -1.57
CLIP1-202ENST00000358808 TENM1Q9UKZ4 2725 aa5.23□□□□□ -1.57
CLIP1-202ENST00000358808 FBN2P35556 2912 aa5.23□□□□□ -1.57
CLIP1-202ENST00000358808 ANK3Q12955 4377 aaKnown RBP5.22□□□□□ -1.57
CLIP1-202ENST00000358808 PDZD2O15018 2839 aa5.22□□□□□ -1.57
CLIP1-202ENST00000358808 CSMD1Q96PZ7 3565 aa5.2□□□□□ -1.58
CLIP1-202ENST00000358808 CUBNO60494 3623 aa5.2□□□□□ -1.58
CLIP1-202ENST00000358808 SPENQ96T58 3664 aaKnown RBP5.19□□□□□ -1.58
CLIP1-202ENST00000358808 CELSR1Q9NYQ6 3014 aa5.17□□□□□ -1.58
CLIP1-202ENST00000358808 TGP01266 2768 aa5.17□□□□□ -1.58
CLIP1-202ENST00000358808 KRTAP13-3Q3SY46 172 aa5.16□□□□□ -1.58
CLIP1-202ENST00000358808 KRTAP12-2P59991 146 aa5.13□□□□□ -1.59
CLIP1-202ENST00000358808 NBPF19A0A087WUL8 3843 aa5.13□□□□□ -1.59
CLIP1-202ENST00000358808 PKD1L1Q8TDX9 2849 aa5.1□□□□□ -1.59
CLIP1-202ENST00000358808 CSMD2Q7Z408 3487 aa5.07□□□□□ -1.6
CLIP1-202ENST00000358808 KRTAP15-1Q3LI76 137 aa5.05□□□□□ -1.6
CLIP1-202ENST00000358808 TENM2Q9NT68 2774 aa5.04□□□□□ -1.6
CLIP1-202ENST00000358808 OTOGQ6ZRI0 2925 aa5.04□□□□□ -1.6
CLIP1-202ENST00000358808 BSNQ9UPA5 3926 aa5.04□□□□□ -1.6
CLIP1-202ENST00000358808 VWFP04275 2813 aa5.03□□□□□ -1.6
CLIP1-202ENST00000358808 MXRA5Q9NR99 2828 aa5.02□□□□□ -1.61
CLIP1-202ENST00000358808 KRTAP13-4Q3LI77 160 aa5□□□□□ -1.61
CLIP1-202ENST00000358808 SRRM2Q9UQ35 2752 aaKnown RBP4.96□□□□□ -1.62
CLIP1-202ENST00000358808 ALMS1Q8TCU4 4167 aa4.96□□□□□ -1.62
CLIP1-202ENST00000358808 CRCT1Q9UGL9 99 aa4.96□□□□□ -1.62
CLIP1-202ENST00000358808 ZFHX3Q15911 3703 aa4.95□□□□□ -1.62
CLIP1-202ENST00000358808 VPS13CQ709C8 3753 aa4.93□□□□□ -1.62
CLIP1-202ENST00000358808 FBN1P35555 2871 aaKnown RBP4.86□□□□□ -1.63
CLIP1-202ENST00000358808 KRTAP12-1P59990 96 aa4.85□□□□□ -1.63
CLIP1-202ENST00000358808 HUWE1Q7Z6Z7 4374 aaKnown RBP4.85□□□□□ -1.63
CLIP1-202ENST00000358808 AKAP9Q99996 3911 aa4.83□□□□□ -1.64
CLIP1-202ENST00000358808 KRTAP3-1Q9BYR8 98 aa4.75□□□□□ -1.65
CLIP1-202ENST00000358808 FBN3Q75N90 2809 aa4.73□□□□□ -1.65
CLIP1-202ENST00000358808 ZNF469Q96JG9 3925 aaPredicted RBP4.72□□□□□ -1.65
CLIP1-202ENST00000358808 INE1O15225 51 aa4.69□□□□□ -1.66
CLIP1-202ENST00000358808 KRTAP10-12P60413 245 aa4.69□□□□□ -1.66
CLIP1-202ENST00000358808 DNAH9Q9NYC9 4486 aa4.68□□□□□ -1.66
CLIP1-202ENST00000358808 MEGF8Q7Z7M0 2845 aa4.68□□□□□ -1.66
CLIP1-202ENST00000358808 COL7A1Q02388 2944 aa4.66□□□□□ -1.66
CLIP1-202ENST00000358808 MT1HL1P0DM35 61 aa4.66□□□□□ -1.66
CLIP1-202ENST00000358808 TRRAPQ9Y4A5 3859 aa4.65□□□□□ -1.66
CLIP1-202ENST00000358808 KRTAP4-5Q9BYR2 181 aa4.65□□□□□ -1.67
CLIP1-202ENST00000358808 KRTAP10-6P60371 365 aaPredicted RBP4.64□□□□□ -1.67
CLIP1-202ENST00000358808 KRTAP10-4P60372 401 aaPredicted RBP4.6□□□□□ -1.67
CLIP1-202ENST00000358808 ANK2Q01484 3957 aa4.53□□□□□ -1.68
CLIP1-202ENST00000358808 KRTAP12-3P60328 96 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms