RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CDK2AP2O75956 126 aa12.91□□□□□ -0.34
SHMT1-202ENST00000352886 ALMS1Q8TCU4 4167 aa12.91□□□□□ -0.34
SHMT1-202ENST00000352886 PSPHP1O15172 72 aa12.9□□□□□ -0.34
SHMT1-202ENST00000352886 TP53AIP1Q9HCN2 124 aa12.86□□□□□ -0.35
SHMT1-202ENST00000352886 SPANXA2-OT1Q8N9U9 137 aa12.84□□□□□ -0.35
SHMT1-202ENST00000352886 NDUFS5O43920 106 aa12.83□□□□□ -0.36
SHMT1-202ENST00000352886 A0A087X002 238 aa12.82□□□□□ -0.36
SHMT1-202ENST00000352886 NOTCH2NLQ7Z3S9 236 aa12.82□□□□□ -0.36
SHMT1-202ENST00000352886 SPINK6Q6UWN8 80 aa12.82□□□□□ -0.36
SHMT1-202ENST00000352886 HYDINQ4G0P3 5121 aa12.81□□□□□ -0.36
SHMT1-202ENST00000352886 MRPL34Q9BQ48 92 aaKnown RBP12.8□□□□□ -0.36
SHMT1-202ENST00000352886 CD164Q04900 197 aa12.77□□□□□ -0.37
SHMT1-202ENST00000352886 SSBP3-AS1Q7Z2R9 100 aa12.77□□□□□ -0.37
SHMT1-202ENST00000352886 PKD1P98161 4303 aa12.77□□□□□ -0.37
SHMT1-202ENST00000352886 KRTAP10-1P60331 282 aa12.77□□□□□ -0.37
SHMT1-202ENST00000352886 A8MUN3 132 aa12.76□□□□□ -0.37
SHMT1-202ENST00000352886 Q6ZSA8 131 aa12.76□□□□□ -0.37
SHMT1-202ENST00000352886 FAT2Q9NYQ8 4349 aa12.74□□□□□ -0.37
SHMT1-202ENST00000352886 PCOTHQ58A44 107 aa12.73□□□□□ -0.37
SHMT1-202ENST00000352886 LRP1BQ9NZR2 4599 aa12.73□□□□□ -0.37
SHMT1-202ENST00000352886 A8MU10 97 aa12.72□□□□□ -0.37
SHMT1-202ENST00000352886 IGLV7-46A0A075B6I9 117 aa12.69□□□□□ -0.38
SHMT1-202ENST00000352886 Q5VV11 94 aa12.69□□□□□ -0.38
SHMT1-202ENST00000352886 KRTAP13-2Q52LG2 175 aa12.67□□□□□ -0.38
SHMT1-202ENST00000352886 C8orf87E5RJ46 101 aa12.58□□□□□ -0.4
SHMT1-202ENST00000352886 Q5W150 140 aa12.58□□□□□ -0.4
SHMT1-202ENST00000352886 COA5Q86WW8 74 aa12.58□□□□□ -0.4
SHMT1-202ENST00000352886 Q8N9P0 234 aaPredicted RBP12.58□□□□□ -0.4
SHMT1-202ENST00000352886 CHKB-CPT1BH3BT56 60 aa12.57□□□□□ -0.4
SHMT1-202ENST00000352886 VPS13BQ7Z7G8 4022 aa12.57□□□□□ -0.4
SHMT1-202ENST00000352886 KRTAP1-4P0C5Y4 121 aa12.56□□□□□ -0.4
SHMT1-202ENST00000352886 KRTAP13-3Q3SY46 172 aa12.54□□□□□ -0.4
SHMT1-202ENST00000352886 LIMD2Q9BT23 127 aa12.54□□□□□ -0.4
SHMT1-202ENST00000352886 LOC101927531A0A1B0GV80 90 aa12.53□□□□□ -0.4
SHMT1-202ENST00000352886 LINC00313P59037 77 aa12.53□□□□□ -0.4
SHMT1-202ENST00000352886 PRR15LQ9BU68 103 aa12.53□□□□□ -0.4
SHMT1-202ENST00000352886 KRTAP21-3Q3LHN1 58 aa12.49□□□□□ -0.41
SHMT1-202ENST00000352886 KTN1-AS1Q86SY8 53 aa12.48□□□□□ -0.41
SHMT1-202ENST00000352886 SPTSSBQ8NFR3 76 aa12.46□□□□□ -0.42
SHMT1-202ENST00000352886 PLA2G1BP04054 148 aaKnown RBP12.45□□□□□ -0.42
SHMT1-202ENST00000352886 LCA10Q71F78 164 aa12.45□□□□□ -0.42
SHMT1-202ENST00000352886 PKHD1P08F94 4074 aa12.44□□□□□ -0.42
SHMT1-202ENST00000352886 SACSQ9NZJ4 4579 aa12.43□□□□□ -0.42
SHMT1-202ENST00000352886 Q75L30 129 aa12.42□□□□□ -0.42
SHMT1-202ENST00000352886 HRES1P13985 223 aa12.41□□□□□ -0.42
SHMT1-202ENST00000352886 ATP11AUNQ6ZP68 121 aa12.4□□□□□ -0.42
SHMT1-202ENST00000352886 RBM12B-AS1Q9P1G2 102 aa12.4□□□□□ -0.42
SHMT1-202ENST00000352886 TYMSOSQ8TAI1 123 aa12.4□□□□□ -0.42
SHMT1-202ENST00000352886 FAM229AH3BQW9 127 aa12.39□□□□□ -0.43
SHMT1-202ENST00000352886 A6NED7 52 aa12.39□□□□□ -0.43
SHMT1-202ENST00000352886 C4orf48Q5BLP8 95 aa12.39□□□□□ -0.43
SHMT1-202ENST00000352886 RETNLBQ9BQ08 111 aa12.39□□□□□ -0.43
SHMT1-202ENST00000352886 KRTAP16-1A8MUX0 517 aa12.37□□□□□ -0.43
SHMT1-202ENST00000352886 A6NN06 94 aa12.35□□□□□ -0.43
SHMT1-202ENST00000352886 SPINK1P00995 79 aa12.32□□□□□ -0.44
SHMT1-202ENST00000352886 SPAG11AQ6PDA7 123 aa12.32□□□□□ -0.44
SHMT1-202ENST00000352886 CDC42SE1Q9NRR8 79 aa12.29□□□□□ -0.44
SHMT1-202ENST00000352886 IGKV2-30P06310 120 aa12.28□□□□□ -0.44
SHMT1-202ENST00000352886 PRR26Q8N8Z3 221 aa12.27□□□□□ -0.44
SHMT1-202ENST00000352886 DYNC1H1Q14204 4646 aaKnown RBP12.25□□□□□ -0.45
SHMT1-202ENST00000352886 SMR3BP02814 79 aaPredicted RBP12.25□□□□□ -0.45
SHMT1-202ENST00000352886 LINC01558Q9Y6Z2 57 aa12.25□□□□□ -0.45
SHMT1-202ENST00000352886 ACYP2P14621 99 aa12.24□□□□□ -0.45
SHMT1-202ENST00000352886 LINC00304Q8N9R0 145 aa12.22□□□□□ -0.45
SHMT1-202ENST00000352886 DMAC1Q96GE9 116 aa12.21□□□□□ -0.45
SHMT1-202ENST00000352886 C7orf65Q6ZTY9 151 aa12.18□□□□□ -0.46
SHMT1-202ENST00000352886 IGKV2D-30A0A075B6S6 120 aa12.16□□□□□ -0.46
SHMT1-202ENST00000352886 A0A1B0GVY2 172 aa12.16□□□□□ -0.46
SHMT1-202ENST00000352886 RPS29P62273 56 aaKnown RBP12.15□□□□□ -0.46
SHMT1-202ENST00000352886 FAT1Q14517 4588 aa12.14□□□□□ -0.47
SHMT1-202ENST00000352886 SPINK7P58062 85 aa12.13□□□□□ -0.47
SHMT1-202ENST00000352886 APOBP04114 4563 aaKnown RBP12.12□□□□□ -0.47
SHMT1-202ENST00000352886 KRTAP10-4P60372 401 aaPredicted RBP12.07□□□□□ -0.48
SHMT1-202ENST00000352886 PKHD1L1Q86WI1 4243 aa12.02□□□□□ -0.49
SHMT1-202ENST00000352886 RYR2Q92736 4967 aa12□□□□□ -0.49
SHMT1-202ENST00000352886 C9orf92A6NGG3 77 aa11.95□□□□□ -0.5
SHMT1-202ENST00000352886 KMT2CQ8NEZ4 4911 aaKnown RBP11.91□□□□□ -0.5
SHMT1-202ENST00000352886 A0A1B0GU69 56 aa11.87□□□□□ -0.51
SHMT1-202ENST00000352886 PRAC1Q96KF2 57 aa11.87□□□□□ -0.51
SHMT1-202ENST00000352886 C20orf166-AS1Q96NR2 134 aa11.87□□□□□ -0.51
SHMT1-202ENST00000352886 A8MUU9 505 aa11.86□□□□□ -0.51
SHMT1-202ENST00000352886 Q8N1X5 172 aa11.85□□□□□ -0.51
SHMT1-202ENST00000352886 ADM2Q7Z4H4 148 aa11.79□□□□□ -0.52
SHMT1-202ENST00000352886 FLG2Q5D862 2391 aaPredicted RBP11.75□□□□□ -0.53
SHMT1-202ENST00000352886 LRP1Q07954 4544 aaKnown RBP11.67□□□□□ -0.54
SHMT1-202ENST00000352886 LINC01554Q52M75 96 aa11.66□□□□□ -0.54
SHMT1-202ENST00000352886 TNXBP22105 4242 aa11.65□□□□□ -0.54
SHMT1-202ENST00000352886 HSPG2P98160 4391 aa11.64□□□□□ -0.55
SHMT1-202ENST00000352886 FAT3Q8TDW7 4589 aa11.64□□□□□ -0.55
SHMT1-202ENST00000352886 SPATA8Q6RVD6 105 aa11.63□□□□□ -0.55
SHMT1-202ENST00000352886 UQCR11O14957 56 aa11.62□□□□□ -0.55
SHMT1-202ENST00000352886 Q5VSD8 79 aa11.62□□□□□ -0.55
SHMT1-202ENST00000352886 KRTAP3-1Q9BYR8 98 aa11.61□□□□□ -0.55
SHMT1-202ENST00000352886 KRTAP10-8P60410 259 aa11.59□□□□□ -0.55
SHMT1-202ENST00000352886 MIR22HGQ0VDD5 57 aa11.58□□□□□ -0.56
SHMT1-202ENST00000352886 RYR3Q15413 4870 aa11.53□□□□□ -0.56
SHMT1-202ENST00000352886 RYR1P21817 5038 aa11.47□□□□□ -0.57
SHMT1-202ENST00000352886 COX6B2Q6YFQ2 88 aa11.45□□□□□ -0.58
SHMT1-202ENST00000352886 DMBT1Q9UGM3 2413 aaPredicted RBP11.44□□□□□ -0.58
SHMT1-202ENST00000352886 H3BS24 57 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms