RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MRPL34Q9BQ48 92 aaKnown RBP4.07□□□□□ -1.76
VPS39-202ENST00000348544 ALMS1Q8TCU4 4167 aa4.06□□□□□ -1.76
VPS39-202ENST00000348544 Q5W150 140 aa4.06□□□□□ -1.76
VPS39-202ENST00000348544 KRTAP13-3Q3SY46 172 aa4.05□□□□□ -1.76
VPS39-202ENST00000348544 COL6A5A8TX70 2615 aa4.04□□□□□ -1.76
VPS39-202ENST00000348544 HUWE1Q7Z6Z7 4374 aaKnown RBP4.04□□□□□ -1.76
VPS39-202ENST00000348544 NBEAL1Q6ZS30 2694 aa4.04□□□□□ -1.76
VPS39-202ENST00000348544 STAB1Q9NY15 2570 aa4.04□□□□□ -1.76
VPS39-202ENST00000348544 PLA2G1BP04054 148 aaKnown RBP4.02□□□□□ -1.77
VPS39-202ENST00000348544 LINC00483Q53H64 154 aa4.02□□□□□ -1.77
VPS39-202ENST00000348544 WWC2-AS2Q96NR7 200 aa4.01□□□□□ -1.77
VPS39-202ENST00000348544 CDK2AP2O75956 126 aa4.01□□□□□ -1.77
VPS39-202ENST00000348544 ANAPC11Q9NYG5 84 aa4.01□□□□□ -1.77
VPS39-202ENST00000348544 RTL8CO15255 209 aa4□□□□□ -1.77
VPS39-202ENST00000348544 ACYP2P14621 99 aa4□□□□□ -1.77
VPS39-202ENST00000348544 C14orf177Q52M58 125 aa3.99□□□□□ -1.77
VPS39-202ENST00000348544 DNAH7Q8WXX0 4024 aa3.99□□□□□ -1.77
VPS39-202ENST00000348544 DMAC1Q96GE9 116 aa3.99□□□□□ -1.77
VPS39-202ENST00000348544 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.99□□□□□ -1.77
VPS39-202ENST00000348544 STAB2Q8WWQ8 2551 aa3.99□□□□□ -1.77
VPS39-202ENST00000348544 LINC01554Q52M75 96 aa3.98□□□□□ -1.77
VPS39-202ENST00000348544 SPATA8Q6RVD6 105 aa3.98□□□□□ -1.77
VPS39-202ENST00000348544 DNAH8Q96JB1 4490 aa3.98□□□□□ -1.77
VPS39-202ENST00000348544 SPINK6Q6UWN8 80 aa3.98□□□□□ -1.77
VPS39-202ENST00000348544 A0A1B0GU69 56 aa3.97□□□□□ -1.77
VPS39-202ENST00000348544 FRAS1Q86XX4 4008 aa3.97□□□□□ -1.77
VPS39-202ENST00000348544 SPACA4Q8TDM5 124 aa3.97□□□□□ -1.77
VPS39-202ENST00000348544 KRTAP24-1Q3LI83 254 aa3.96□□□□□ -1.78
VPS39-202ENST00000348544 UBE2DNLQ8IWF7 75 aa3.96□□□□□ -1.78
VPS39-202ENST00000348544 MIR22HGQ0VDD5 57 aa3.94□□□□□ -1.78
VPS39-202ENST00000348544 Q6ZRN7 208 aaPredicted RBP3.94□□□□□ -1.78
VPS39-202ENST00000348544 PSORS1C2Q9UIG4 136 aa3.94□□□□□ -1.78
VPS39-202ENST00000348544 APLNQ9ULZ1 77 aa3.94□□□□□ -1.78
VPS39-202ENST00000348544 ZNF706Q9Y5V0 76 aaPredicted RBP3.94□□□□□ -1.78
VPS39-202ENST00000348544 RETNLBQ9BQ08 111 aa3.94□□□□□ -1.78
VPS39-202ENST00000348544 IGLV5-52A0A0A0MRZ9 124 aa3.93□□□□□ -1.78
VPS39-202ENST00000348544 DYNC2H1Q8NCM8 4307 aaKnown RBP3.93□□□□□ -1.78
VPS39-202ENST00000348544 UQCR11O14957 56 aa3.92□□□□□ -1.78
VPS39-202ENST00000348544 CSAG1Q6PB30 78 aa3.92□□□□□ -1.78
VPS39-202ENST00000348544 ZNF861PO60384 105 aa3.91□□□□□ -1.78
VPS39-202ENST00000348544 IGKV2-30P06310 120 aa3.91□□□□□ -1.78
VPS39-202ENST00000348544 HECTD4Q9Y4D8 3996 aa3.91□□□□□ -1.78
VPS39-202ENST00000348544 PLECQ15149 4684 aaKnown RBP3.91□□□□□ -1.78
VPS39-202ENST00000348544 NBDYA0A0U1RRE5 68 aa3.9□□□□□ -1.78
VPS39-202ENST00000348544 CIRBP-AS1Q8TBR5 109 aa3.9□□□□□ -1.79
VPS39-202ENST00000348544 MGAM2Q2M2H8 2515 aa3.87□□□□□ -1.79
VPS39-202ENST00000348544 DNAH17Q9UFH2 4485 aa3.87□□□□□ -1.79
VPS39-202ENST00000348544 KRTAP16-1A8MUX0 517 aa3.87□□□□□ -1.79
VPS39-202ENST00000348544 A0A087WTM6 91 aa3.86□□□□□ -1.79
VPS39-202ENST00000348544 IGLV7-43P04211 117 aa3.86□□□□□ -1.79
VPS39-202ENST00000348544 VPS13DQ5THJ4 4388 aa3.85□□□□□ -1.79
VPS39-202ENST00000348544 MEGF8Q7Z7M0 2845 aa3.85□□□□□ -1.79
VPS39-202ENST00000348544 IGKV2D-30A0A075B6S6 120 aa3.85□□□□□ -1.79
VPS39-202ENST00000348544 FBN3Q75N90 2809 aa3.84□□□□□ -1.8
VPS39-202ENST00000348544 SSBP3-AS1Q7Z2R9 100 aa3.83□□□□□ -1.8
VPS39-202ENST00000348544 DNHD1Q96M86 4753 aa3.83□□□□□ -1.8
VPS39-202ENST00000348544 TGP01266 2768 aa3.82□□□□□ -1.8
VPS39-202ENST00000348544 DNAH2Q9P225 4427 aa3.82□□□□□ -1.8
VPS39-202ENST00000348544 STARD9Q9P2P6 4700 aa3.82□□□□□ -1.8
VPS39-202ENST00000348544 SPINK1P00995 79 aa3.81□□□□□ -1.8
VPS39-202ENST00000348544 KRTAP13-2Q52LG2 175 aa3.81□□□□□ -1.8
VPS39-202ENST00000348544 H0YAA0 97 aa3.8□□□□□ -1.8
VPS39-202ENST00000348544 KMT2AQ03164 3969 aa3.79□□□□□ -1.8
VPS39-202ENST00000348544 A8MUU9 505 aa3.79□□□□□ -1.8
VPS39-202ENST00000348544 C1orf134Q5TEV5 83 aa3.79□□□□□ -1.8
VPS39-202ENST00000348544 Q6ZSA8 131 aa3.79□□□□□ -1.8
VPS39-202ENST00000348544 Q8N1X5 172 aa3.79□□□□□ -1.8
VPS39-202ENST00000348544 LINC00304Q8N9R0 145 aa3.77□□□□□ -1.81
VPS39-202ENST00000348544 DNAH11Q96DT5 4516 aa3.77□□□□□ -1.81
VPS39-202ENST00000348544 LY6G6CO95867 125 aa3.77□□□□□ -1.81
VPS39-202ENST00000348544 KRTAP25-1Q3LHN0 102 aa3.77□□□□□ -1.81
VPS39-202ENST00000348544 PRKDCP78527 4128 aaKnown RBP3.77□□□□□ -1.81
VPS39-202ENST00000348544 DNAH6Q9C0G6 4158 aa3.77□□□□□ -1.81
VPS39-202ENST00000348544 NUPR2A6NF83 97 aa3.77□□□□□ -1.81
VPS39-202ENST00000348544 TYMSOSQ8TAI1 123 aa3.76□□□□□ -1.81
VPS39-202ENST00000348544 ROMO1P60602 79 aa3.74□□□□□ -1.81
VPS39-202ENST00000348544 DNAH5Q8TE73 4624 aa3.73□□□□□ -1.81
VPS39-202ENST00000348544 XP32Q5T750 250 aa3.73□□□□□ -1.81
VPS39-202ENST00000348544 KRTAP1-4P0C5Y4 121 aa3.72□□□□□ -1.81
VPS39-202ENST00000348544 LRP1BQ9NZR2 4599 aa3.72□□□□□ -1.81
VPS39-202ENST00000348544 FLG2Q5D862 2391 aaPredicted RBP3.71□□□□□ -1.82
VPS39-202ENST00000348544 LOC100996750A0A140TA64 210 aa3.71□□□□□ -1.82
VPS39-202ENST00000348544 KRTAP4-6Q9BYQ5 205 aa3.71□□□□□ -1.82
VPS39-202ENST00000348544 A0A1B0GU33 70 aa3.7□□□□□ -1.82
VPS39-202ENST00000348544 CRIPTQ9P021 101 aa3.7□□□□□ -1.82
VPS39-202ENST00000348544 KRTAP3-1Q9BYR8 98 aa3.7□□□□□ -1.82
VPS39-202ENST00000348544 H1FX-AS1Q4G0G2 97 aa3.69□□□□□ -1.82
VPS39-202ENST00000348544 KRTAP10-2P60368 255 aa3.69□□□□□ -1.82
VPS39-202ENST00000348544 P0C880 135 aa3.67□□□□□ -1.82
VPS39-202ENST00000348544 VPS13BQ7Z7G8 4022 aa3.66□□□□□ -1.82
VPS39-202ENST00000348544 KRTAP10-1P60331 282 aa3.64□□□□□ -1.83
VPS39-202ENST00000348544 PKD1P98161 4303 aa3.63□□□□□ -1.83
VPS39-202ENST00000348544 A0A0A0MQY5 61 aa3.63□□□□□ -1.83
VPS39-202ENST00000348544 COX6B2Q6YFQ2 88 aa3.63□□□□□ -1.83
VPS39-202ENST00000348544 FAT2Q9NYQ8 4349 aa3.61□□□□□ -1.83
VPS39-202ENST00000348544 C9orf92A6NGG3 77 aa3.6□□□□□ -1.83
VPS39-202ENST00000348544 C20orf166-AS1Q96NR2 134 aa3.6□□□□□ -1.83
VPS39-202ENST00000348544 K7ERS5 55 aa3.59□□□□□ -1.83
VPS39-202ENST00000348544 TPRXLQ17RH7 258 aa3.58□□□□□ -1.84
VPS39-202ENST00000348544 KRTAP13-4Q3LI77 160 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms