RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 ASPMQ8IZT6 3477 aa7.53□□□□□ -1.2
USP47-202ENST00000339865 DCHS1Q96JQ0 3298 aa7.53□□□□□ -1.2
USP47-202ENST00000339865 ZZEF1O43149 2961 aa7.52□□□□□ -1.21
USP47-202ENST00000339865 SPTBN5Q9NRC6 3674 aaKnown RBP7.51□□□□□ -1.21
USP47-202ENST00000339865 SPRR1BP22528 89 aa7.51□□□□□ -1.21
USP47-202ENST00000339865 DMXL1Q9Y485 3027 aa7.46□□□□□ -1.22
USP47-202ENST00000339865 TNP1P09430 55 aa7.45□□□□□ -1.22
USP47-202ENST00000339865 KRTAP10-1P60331 282 aa7.43□□□□□ -1.22
USP47-202ENST00000339865 ADGRG4Q8IZF6 3080 aa7.42□□□□□ -1.22
USP47-202ENST00000339865 KRTAP10-2P60368 255 aa7.41□□□□□ -1.22
USP47-202ENST00000339865 KRTAP29-1A8MX34 341 aaPredicted RBP7.4□□□□□ -1.22
USP47-202ENST00000339865 A0A087X002 238 aa7.39□□□□□ -1.23
USP47-202ENST00000339865 NOTCH2NLQ7Z3S9 236 aa7.39□□□□□ -1.23
USP47-202ENST00000339865 TNRC18O15417 2968 aaPredicted RBP7.38□□□□□ -1.23
USP47-202ENST00000339865 LOC400499M0QZD8 3231 aa7.38□□□□□ -1.23
USP47-202ENST00000339865 A0A1B0GVY2 172 aa7.37□□□□□ -1.23
USP47-202ENST00000339865 KRTAP10-8P60410 259 aa7.37□□□□□ -1.23
USP47-202ENST00000339865 KRTAP11-1Q8IUC1 163 aa7.34□□□□□ -1.23
USP47-202ENST00000339865 KRTAP4-16G5E9R7 235 aaPredicted RBP7.34□□□□□ -1.23
USP47-202ENST00000339865 NBEAQ8NFP9 2946 aa7.33□□□□□ -1.24
USP47-202ENST00000339865 KRTAP1-5Q9BYS1 174 aa7.33□□□□□ -1.24
USP47-202ENST00000339865 TACC2O95359 2948 aa7.33□□□□□ -1.24
USP47-202ENST00000339865 KRTAP1-3Q8IUG1 177 aa7.31□□□□□ -1.24
USP47-202ENST00000339865 HIVEP1P15822 2718 aa7.29□□□□□ -1.24
USP47-202ENST00000339865 EYSQ5T1H1 3165 aa7.29□□□□□ -1.24
USP47-202ENST00000339865 LAMA5O15230 3695 aa7.28□□□□□ -1.24
USP47-202ENST00000339865 CELSR1Q9NYQ6 3014 aa7.26□□□□□ -1.25
USP47-202ENST00000339865 CELSR2Q9HCU4 2923 aa7.26□□□□□ -1.25
USP47-202ENST00000339865 KRTAP1-1Q07627 177 aa7.25□□□□□ -1.25
USP47-202ENST00000339865 NF1P21359 2839 aa7.21□□□□□ -1.25
USP47-202ENST00000339865 CSMD1Q96PZ7 3565 aa7.19□□□□□ -1.26
USP47-202ENST00000339865 TENM1Q9UKZ4 2725 aa7.19□□□□□ -1.26
USP47-202ENST00000339865 RELNP78509 3460 aa7.18□□□□□ -1.26
USP47-202ENST00000339865 PP632Q6XCG6 107 aa7.18□□□□□ -1.26
USP47-202ENST00000339865 TENM3Q9P273 2699 aa7.18□□□□□ -1.26
USP47-202ENST00000339865 NIPBLQ6KC79 2804 aaeCLIP7.15□□□□□ -1.26
USP47-202ENST00000339865 ZFHX4Q86UP3 3567 aa7.15□□□□□ -1.27
USP47-202ENST00000339865 KRTAP10-10P60014 251 aa7.14□□□□□ -1.27
USP47-202ENST00000339865 PDZD2O15018 2839 aa7.11□□□□□ -1.27
USP47-202ENST00000339865 FLNCQ14315 2725 aa7.08□□□□□ -1.28
USP47-202ENST00000339865 SRRM2Q9UQ35 2752 aaKnown RBP7.07□□□□□ -1.28
USP47-202ENST00000339865 TGP01266 2768 aa7.06□□□□□ -1.28
USP47-202ENST00000339865 DCHS2Q6V1P9 2916 aa7.05□□□□□ -1.28
USP47-202ENST00000339865 RPS29P62273 56 aaKnown RBP7.04□□□□□ -1.28
USP47-202ENST00000339865 PRO2289Q9P1D8 64 aa7.04□□□□□ -1.28
USP47-202ENST00000339865 H0YAA0 97 aa6.99□□□□□ -1.29
USP47-202ENST00000339865 Q6ZRN7 208 aaPredicted RBP6.97□□□□□ -1.29
USP47-202ENST00000339865 CUBNO60494 3623 aa6.95□□□□□ -1.3
USP47-202ENST00000339865 KRTAP13-2Q52LG2 175 aa6.93□□□□□ -1.3
USP47-202ENST00000339865 SPENQ96T58 3664 aaKnown RBP6.9□□□□□ -1.31
USP47-202ENST00000339865 DMDP11532 3685 aa6.89□□□□□ -1.31
USP47-202ENST00000339865 SMG1Q96Q15 3661 aaKnown RBP6.89□□□□□ -1.31
USP47-202ENST00000339865 NBPF19A0A087WUL8 3843 aa6.86□□□□□ -1.31
USP47-202ENST00000339865 KRTAP7-1Q8IUC3 87 aa6.82□□□□□ -1.32
USP47-202ENST00000339865 FBN2P35556 2912 aa6.82□□□□□ -1.32
USP47-202ENST00000339865 VWFP04275 2813 aa6.82□□□□□ -1.32
USP47-202ENST00000339865 PKD1L1Q8TDX9 2849 aa6.79□□□□□ -1.32
USP47-202ENST00000339865 KRTAP13-1Q8IUC0 172 aa6.77□□□□□ -1.33
USP47-202ENST00000339865 ZANQ9Y493 2812 aa6.74□□□□□ -1.33
USP47-202ENST00000339865 SVEP1Q4LDE5 3571 aa6.71□□□□□ -1.33
USP47-202ENST00000339865 CRCT1Q9UGL9 99 aa6.69□□□□□ -1.34
USP47-202ENST00000339865 XP32Q5T750 250 aa6.65□□□□□ -1.34
USP47-202ENST00000339865 TENM4Q6N022 2769 aa6.63□□□□□ -1.35
USP47-202ENST00000339865 KRTAP12-2P59991 146 aa6.62□□□□□ -1.35
USP47-202ENST00000339865 COL7A1Q02388 2944 aa6.61□□□□□ -1.35
USP47-202ENST00000339865 TENM2Q9NT68 2774 aa6.59□□□□□ -1.36
USP47-202ENST00000339865 MXRA5Q9NR99 2828 aa6.56□□□□□ -1.36
USP47-202ENST00000339865 CSMD2Q7Z408 3487 aa6.51□□□□□ -1.37
USP47-202ENST00000339865 MUC3AQ02505 3323 aa6.48□□□□□ -1.37
USP47-202ENST00000339865 ZFHX3Q15911 3703 aa6.47□□□□□ -1.37
USP47-202ENST00000339865 MEGF8Q7Z7M0 2845 aa6.45□□□□□ -1.38
USP47-202ENST00000339865 TPRXLQ17RH7 258 aa6.44□□□□□ -1.38
USP47-202ENST00000339865 KRTAP13-4Q3LI77 160 aa6.44□□□□□ -1.38
USP47-202ENST00000339865 OTOGQ6ZRI0 2925 aa6.43□□□□□ -1.38
USP47-202ENST00000339865 KRTAP15-1Q3LI76 137 aa6.42□□□□□ -1.38
USP47-202ENST00000339865 KRTAP1-4P0C5Y4 121 aa6.4□□□□□ -1.39
USP47-202ENST00000339865 KRTAP21-3Q3LHN1 58 aa6.38□□□□□ -1.39
USP47-202ENST00000339865 HRNRQ86YZ3 2850 aaPredicted RBP6.35□□□□□ -1.39
USP47-202ENST00000339865 KRTAP12-1P59990 96 aa6.33□□□□□ -1.4
USP47-202ENST00000339865 INE1O15225 51 aa6.32□□□□□ -1.4
USP47-202ENST00000339865 CSMD3Q7Z407 3707 aa6.29□□□□□ -1.4
USP47-202ENST00000339865 KRTAP13-3Q3SY46 172 aa6.28□□□□□ -1.4
USP47-202ENST00000339865 VPS13CQ709C8 3753 aa6.24□□□□□ -1.41
USP47-202ENST00000339865 FBN3Q75N90 2809 aa6.19□□□□□ -1.42
USP47-202ENST00000339865 KRTAP10-6P60371 365 aaPredicted RBP6.14□□□□□ -1.43
USP47-202ENST00000339865 LORP23490 312 aaPredicted RBP6.09□□□□□ -1.43
USP47-202ENST00000339865 FBN1P35555 2871 aaKnown RBP6.07□□□□□ -1.44
USP47-202ENST00000339865 TRRAPQ9Y4A5 3859 aa5.97□□□□□ -1.45
USP47-202ENST00000339865 BSNQ9UPA5 3926 aa5.93□□□□□ -1.46
USP47-202ENST00000339865 KRTAP3-1Q9BYR8 98 aa5.9□□□□□ -1.47
USP47-202ENST00000339865 KRTAP10-12P60413 245 aa5.87□□□□□ -1.47
USP47-202ENST00000339865 KRTAP10-5P60370 271 aa5.78□□□□□ -1.48
USP47-202ENST00000339865 AKAP9Q99996 3911 aa5.77□□□□□ -1.49
USP47-202ENST00000339865 KRTAP12-3P60328 96 aa5.71□□□□□ -1.5
USP47-202ENST00000339865 KRTAP8-1Q8IUC2 63 aa5.68□□□□□ -1.5
USP47-202ENST00000339865 KRTAP10-7P60409 375 aaPredicted RBP5.64□□□□□ -1.51
USP47-202ENST00000339865 LCE3AQ5TA76 89 aa5.59□□□□□ -1.51
USP47-202ENST00000339865 ZNF469Q96JG9 3925 aaPredicted RBP5.57□□□□□ -1.52
USP47-202ENST00000339865 KRTAP3-2Q9BYR7 98 aa5.52□□□□□ -1.53
USP47-202ENST00000339865 KRTAP3-3Q9BYR6 98 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms