RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 GIG44P09565 113 aaPredicted RBP2□□□□□ -2.09
CSMD3-202ENST00000339701 S4R3F8 94 aa2□□□□□ -2.09
CSMD3-202ENST00000339701 NF1P21359 2839 aa2□□□□□ -2.09
CSMD3-202ENST00000339701 BOD1L1Q8NFC6 3051 aa2□□□□□ -2.09
CSMD3-202ENST00000339701 FAM168BA1KXE4 195 aa1.99□□□□□ -2.09
CSMD3-202ENST00000339701 DMXL2Q8TDJ6 3036 aa1.99□□□□□ -2.09
CSMD3-202ENST00000339701 CFAP47Q6ZTR5 3102 aa1.98□□□□□ -2.09
CSMD3-202ENST00000339701 COL12A1Q99715 3063 aa1.97□□□□□ -2.09
CSMD3-202ENST00000339701 H1FX-AS1Q4G0G2 97 aa1.97□□□□□ -2.09
CSMD3-202ENST00000339701 LRBAP50851 2863 aa1.97□□□□□ -2.09
CSMD3-202ENST00000339701 KRTAP10-1P60331 282 aa1.97□□□□□ -2.09
CSMD3-202ENST00000339701 PRO2289Q9P1D8 64 aa1.97□□□□□ -2.09
CSMD3-202ENST00000339701 NBEAL2Q6ZNJ1 2754 aa1.96□□□□□ -2.1
CSMD3-202ENST00000339701 ATMQ13315 3056 aa1.96□□□□□ -2.1
CSMD3-202ENST00000339701 Q5W150 140 aa1.96□□□□□ -2.1
CSMD3-202ENST00000339701 DMXL1Q9Y485 3027 aa1.95□□□□□ -2.1
CSMD3-202ENST00000339701 KRTAP29-1A8MX34 341 aaPredicted RBP1.95□□□□□ -2.1
CSMD3-202ENST00000339701 RELNP78509 3460 aa1.95□□□□□ -2.1
CSMD3-202ENST00000339701 A0A1W2PNN7 141 aa1.95□□□□□ -2.1
CSMD3-202ENST00000339701 KRTAP10-2P60368 255 aa1.95□□□□□ -2.1
CSMD3-202ENST00000339701 KRTAP25-1Q3LHN0 102 aa1.95□□□□□ -2.1
CSMD3-202ENST00000339701 ZZEF1O43149 2961 aa1.95□□□□□ -2.1
CSMD3-202ENST00000339701 CELSR2Q9HCU4 2923 aa1.95□□□□□ -2.1
CSMD3-202ENST00000339701 LAMA5O15230 3695 aa1.94□□□□□ -2.1
CSMD3-202ENST00000339701 C20orf166-AS1Q96NR2 134 aa1.94□□□□□ -2.1
CSMD3-202ENST00000339701 A6NN06 94 aa1.94□□□□□ -2.1
CSMD3-202ENST00000339701 A8MUU9 505 aa1.94□□□□□ -2.1
CSMD3-202ENST00000339701 KRTAP4-16G5E9R7 235 aaPredicted RBP1.93□□□□□ -2.1
CSMD3-202ENST00000339701 KRTAP19-4Q3LI73 84 aa1.93□□□□□ -2.1
CSMD3-202ENST00000339701 CELSR1Q9NYQ6 3014 aa1.93□□□□□ -2.1
CSMD3-202ENST00000339701 SMG1Q96Q15 3661 aaKnown RBP1.93□□□□□ -2.1
CSMD3-202ENST00000339701 CSMD1Q96PZ7 3565 aa1.92□□□□□ -2.1
CSMD3-202ENST00000339701 ADGRG4Q8IZF6 3080 aa1.92□□□□□ -2.1
CSMD3-202ENST00000339701 PDZD2O15018 2839 aa1.92□□□□□ -2.1
CSMD3-202ENST00000339701 TENM2Q9NT68 2774 aa1.91□□□□□ -2.1
CSMD3-202ENST00000339701 CSMD2Q7Z408 3487 aa1.91□□□□□ -2.1
CSMD3-202ENST00000339701 DCHS1Q96JQ0 3298 aa1.91□□□□□ -2.1
CSMD3-202ENST00000339701 PKD1L1Q8TDX9 2849 aa1.9□□□□□ -2.1
CSMD3-202ENST00000339701 A0A0G2JQZ4 141 aa1.9□□□□□ -2.1
CSMD3-202ENST00000339701 LOC400499M0QZD8 3231 aa1.9□□□□□ -2.1
CSMD3-202ENST00000339701 A0A0D9SG42 100 aa1.9□□□□□ -2.11
CSMD3-202ENST00000339701 TGP01266 2768 aa1.9□□□□□ -2.11
CSMD3-202ENST00000339701 MXRA5Q9NR99 2828 aa1.9□□□□□ -2.11
CSMD3-202ENST00000339701 CYSTM1Q9H1C7 97 aa1.89□□□□□ -2.11
CSMD3-202ENST00000339701 DCHS2Q6V1P9 2916 aa1.89□□□□□ -2.11
CSMD3-202ENST00000339701 KRTAP26-1Q6PEX3 210 aa1.89□□□□□ -2.11
CSMD3-202ENST00000339701 H0YAA0 97 aa1.88□□□□□ -2.11
CSMD3-202ENST00000339701 COL7A1Q02388 2944 aa1.88□□□□□ -2.11
CSMD3-202ENST00000339701 PRAC1Q96KF2 57 aa1.88□□□□□ -2.11
CSMD3-202ENST00000339701 KRTAP11-1Q8IUC1 163 aa1.87□□□□□ -2.11
CSMD3-202ENST00000339701 Q6ZRN7 208 aaPredicted RBP1.86□□□□□ -2.11
CSMD3-202ENST00000339701 TPRXLQ17RH7 258 aa1.86□□□□□ -2.11
CSMD3-202ENST00000339701 KRTAP10-10P60014 251 aa1.86□□□□□ -2.11
CSMD3-202ENST00000339701 Q8NDZ9 215 aa1.86□□□□□ -2.11
CSMD3-202ENST00000339701 TACC2O95359 2948 aa1.86□□□□□ -2.11
CSMD3-202ENST00000339701 VWFP04275 2813 aa1.85□□□□□ -2.11
CSMD3-202ENST00000339701 KRTAP23-1A1A580 65 aa1.84□□□□□ -2.11
CSMD3-202ENST00000339701 INE1O15225 51 aa1.84□□□□□ -2.11
CSMD3-202ENST00000339701 ZANQ9Y493 2812 aa1.83□□□□□ -2.12
CSMD3-202ENST00000339701 KRTAP13-1Q8IUC0 172 aa1.83□□□□□ -2.12
CSMD3-202ENST00000339701 KRTAP1-5Q9BYS1 174 aa1.82□□□□□ -2.12
CSMD3-202ENST00000339701 P0C880 135 aa1.82□□□□□ -2.12
CSMD3-202ENST00000339701 SRRM2Q9UQ35 2752 aaKnown RBP1.82□□□□□ -2.12
CSMD3-202ENST00000339701 MUC3AQ02505 3323 aa1.81□□□□□ -2.12
CSMD3-202ENST00000339701 KRTAP10-8P60410 259 aa1.81□□□□□ -2.12
CSMD3-202ENST00000339701 VPS13CQ709C8 3753 aa1.79□□□□□ -2.12
CSMD3-202ENST00000339701 HRNRQ86YZ3 2850 aaPredicted RBP1.79□□□□□ -2.12
CSMD3-202ENST00000339701 A8MU10 97 aa1.78□□□□□ -2.12
CSMD3-202ENST00000339701 AKAP9Q99996 3911 aa1.77□□□□□ -2.13
CSMD3-202ENST00000339701 C10orf95Q9H7T3 257 aa1.76□□□□□ -2.13
CSMD3-202ENST00000339701 MEGF8Q7Z7M0 2845 aa1.75□□□□□ -2.13
CSMD3-202ENST00000339701 A0A1B0GVY2 172 aa1.75□□□□□ -2.13
CSMD3-202ENST00000339701 SVEP1Q4LDE5 3571 aa1.75□□□□□ -2.13
CSMD3-202ENST00000339701 FBN3Q75N90 2809 aa1.75□□□□□ -2.13
CSMD3-202ENST00000339701 TRRAPQ9Y4A5 3859 aa1.74□□□□□ -2.13
CSMD3-202ENST00000339701 FBN2P35556 2912 aa1.74□□□□□ -2.13
CSMD3-202ENST00000339701 BSNQ9UPA5 3926 aa1.74□□□□□ -2.13
CSMD3-202ENST00000339701 XP32Q5T750 250 aa1.73□□□□□ -2.13
CSMD3-202ENST00000339701 KRTAP7-1Q8IUC3 87 aa1.72□□□□□ -2.13
CSMD3-202ENST00000339701 FBN1P35555 2871 aaKnown RBP1.72□□□□□ -2.13
CSMD3-202ENST00000339701 KRTAP13-4Q3LI77 160 aa1.72□□□□□ -2.13
CSMD3-202ENST00000339701 OTOGQ6ZRI0 2925 aa1.7□□□□□ -2.14
CSMD3-202ENST00000339701 LYSTQ99698 3801 aa1.69□□□□□ -2.14
CSMD3-202ENST00000339701 CSMD3Q7Z407 3707 aa1.69□□□□□ -2.14
CSMD3-202ENST00000339701 KRTAP3-3Q9BYR6 98 aa1.69□□□□□ -2.14
CSMD3-202ENST00000339701 KRTAP3-2Q9BYR7 98 aa1.69□□□□□ -2.14
CSMD3-202ENST00000339701 LCE2DQ5TA82 110 aaPredicted RBP1.67□□□□□ -2.14
CSMD3-202ENST00000339701 KRTAP13-3Q3SY46 172 aa1.67□□□□□ -2.14
CSMD3-202ENST00000339701 KRTAP13-2Q52LG2 175 aa1.67□□□□□ -2.14
CSMD3-202ENST00000339701 CUBNO60494 3623 aa1.67□□□□□ -2.14
CSMD3-202ENST00000339701 ANK3Q12955 4377 aaKnown RBP1.67□□□□□ -2.14
CSMD3-202ENST00000339701 DNAH3Q8TD57 4116 aa1.66□□□□□ -2.14
CSMD3-202ENST00000339701 DNHD1Q96M86 4753 aa1.65□□□□□ -2.15
CSMD3-202ENST00000339701 ANK2Q01484 3957 aa1.65□□□□□ -2.15
CSMD3-202ENST00000339701 ZNF469Q96JG9 3925 aaPredicted RBP1.64□□□□□ -2.15
CSMD3-202ENST00000339701 KRTAP1-4P0C5Y4 121 aa1.64□□□□□ -2.15
CSMD3-202ENST00000339701 CMYA5Q8N3K9 4069 aa1.63□□□□□ -2.15
CSMD3-202ENST00000339701 DNAH6Q9C0G6 4158 aa1.63□□□□□ -2.15
CSMD3-202ENST00000339701 MT3P25713 68 aa1.6□□□□□ -2.15
CSMD3-202ENST00000339701 KRTAP12-2P59991 146 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms