RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 KRTAP1-5Q9BYS1 174 aa9.76□□□□□ -0.85
NPHP3-201ENST00000337331 KMT2BQ9UMN6 2715 aaPredicted RBP9.75□□□□□ -0.85
NPHP3-201ENST00000337331 CELSR1Q9NYQ6 3014 aa9.73□□□□□ -0.85
NPHP3-201ENST00000337331 SPRR1BP22528 89 aa9.71□□□□□ -0.86
NPHP3-201ENST00000337331 ASB16-AS1Q495Z4 193 aa9.68□□□□□ -0.86
NPHP3-201ENST00000337331 SPATA8Q6RVD6 105 aa9.67□□□□□ -0.86
NPHP3-201ENST00000337331 PLAC8Q9NZF1 115 aa9.66□□□□□ -0.86
NPHP3-201ENST00000337331 Q6ZR54 194 aa9.66□□□□□ -0.86
NPHP3-201ENST00000337331 A0A0D9SG42 100 aa9.63□□□□□ -0.87
NPHP3-201ENST00000337331 TENM4Q6N022 2769 aa9.61□□□□□ -0.87
NPHP3-201ENST00000337331 J3QL48 77 aa9.61□□□□□ -0.87
NPHP3-201ENST00000337331 COX6B2Q6YFQ2 88 aa9.58□□□□□ -0.88
NPHP3-201ENST00000337331 MXRA5Q9NR99 2828 aa9.56□□□□□ -0.88
NPHP3-201ENST00000337331 A0A087X002 238 aa9.56□□□□□ -0.88
NPHP3-201ENST00000337331 NOTCH2NLQ7Z3S9 236 aa9.56□□□□□ -0.88
NPHP3-201ENST00000337331 Q5W150 140 aa9.55□□□□□ -0.88
NPHP3-201ENST00000337331 DMAC1Q96GE9 116 aa9.54□□□□□ -0.88
NPHP3-201ENST00000337331 KRTAP7-1Q8IUC3 87 aa9.53□□□□□ -0.88
NPHP3-201ENST00000337331 PANO1I0J062 215 aa9.52□□□□□ -0.89
NPHP3-201ENST00000337331 A0A1B0GU33 70 aa9.51□□□□□ -0.89
NPHP3-201ENST00000337331 ROMO1P60602 79 aa9.49□□□□□ -0.89
NPHP3-201ENST00000337331 KRTAP25-1Q3LHN0 102 aa9.46□□□□□ -0.89
NPHP3-201ENST00000337331 BSNQ9UPA5 3926 aa9.46□□□□□ -0.89
NPHP3-201ENST00000337331 KRTAP10-2P60368 255 aa9.39□□□□□ -0.91
NPHP3-201ENST00000337331 KRTAP11-1Q8IUC1 163 aa9.38□□□□□ -0.91
NPHP3-201ENST00000337331 ZFHX3Q15911 3703 aa9.38□□□□□ -0.91
NPHP3-201ENST00000337331 KRTAP10-1P60331 282 aa9.38□□□□□ -0.91
NPHP3-201ENST00000337331 LINC00483Q53H64 154 aa9.38□□□□□ -0.91
NPHP3-201ENST00000337331 Q6ZSA8 131 aa9.38□□□□□ -0.91
NPHP3-201ENST00000337331 PDZD2O15018 2839 aa9.36□□□□□ -0.91
NPHP3-201ENST00000337331 TENM3Q9P273 2699 aa9.36□□□□□ -0.91
NPHP3-201ENST00000337331 NBPF19A0A087WUL8 3843 aa9.32□□□□□ -0.92
NPHP3-201ENST00000337331 NDUFAF8A1L188 74 aa9.3□□□□□ -0.92
NPHP3-201ENST00000337331 A8MUU9 505 aa9.27□□□□□ -0.92
NPHP3-201ENST00000337331 KRTAP16-1A8MUX0 517 aa9.27□□□□□ -0.93
NPHP3-201ENST00000337331 OTOGQ6ZRI0 2925 aa9.26□□□□□ -0.93
NPHP3-201ENST00000337331 CSMD2Q7Z408 3487 aa9.22□□□□□ -0.93
NPHP3-201ENST00000337331 Q6ZRN7 208 aaPredicted RBP9.2□□□□□ -0.94
NPHP3-201ENST00000337331 CAMK2N1Q7Z7J9 78 aa9.19□□□□□ -0.94
NPHP3-201ENST00000337331 S4R3F8 94 aa9.18□□□□□ -0.94
NPHP3-201ENST00000337331 A0A0A0MQY5 61 aa9.17□□□□□ -0.94
NPHP3-201ENST00000337331 H1FX-AS1Q4G0G2 97 aa9.17□□□□□ -0.94
NPHP3-201ENST00000337331 TENM1Q9UKZ4 2725 aa9.15□□□□□ -0.94
NPHP3-201ENST00000337331 KRTAP13-1Q8IUC0 172 aa9.1□□□□□ -0.95
NPHP3-201ENST00000337331 RPL37P61927 97 aaKnown RBP9.09□□□□□ -0.95
NPHP3-201ENST00000337331 LUZP6Q538Z0 58 aa9.09□□□□□ -0.95
NPHP3-201ENST00000337331 Q5VSD8 79 aa9.09□□□□□ -0.95
NPHP3-201ENST00000337331 SRRM2Q9UQ35 2752 aaKnown RBP9.08□□□□□ -0.96
NPHP3-201ENST00000337331 R4GN34 69 aa9.07□□□□□ -0.96
NPHP3-201ENST00000337331 PKD1L1Q8TDX9 2849 aa9.05□□□□□ -0.96
NPHP3-201ENST00000337331 KRTAP13-2Q52LG2 175 aa9.01□□□□□ -0.97
NPHP3-201ENST00000337331 C20orf166-AS1Q96NR2 134 aa9.01□□□□□ -0.97
NPHP3-201ENST00000337331 VWFP04275 2813 aa9□□□□□ -0.97
NPHP3-201ENST00000337331 H0YAA0 97 aa9□□□□□ -0.97
NPHP3-201ENST00000337331 TGP01266 2768 aa8.99□□□□□ -0.97
NPHP3-201ENST00000337331 M0R2T5 61 aa8.97□□□□□ -0.97
NPHP3-201ENST00000337331 SEC61BP60468 96 aaKnown RBP8.94□□□□□ -0.98
NPHP3-201ENST00000337331 FBN1P35555 2871 aaKnown RBP8.93□□□□□ -0.98
NPHP3-201ENST00000337331 M0QZ58 72 aa8.91□□□□□ -0.98
NPHP3-201ENST00000337331 C10orf95Q9H7T3 257 aa8.9□□□□□ -0.98
NPHP3-201ENST00000337331 VPS13CQ709C8 3753 aa8.88□□□□□ -0.99
NPHP3-201ENST00000337331 ANK3Q12955 4377 aaKnown RBP8.88□□□□□ -0.99
NPHP3-201ENST00000337331 RPS29P62273 56 aaKnown RBP8.85□□□□□ -0.99
NPHP3-201ENST00000337331 KRTAP13-3Q3SY46 172 aa8.85□□□□□ -0.99
NPHP3-201ENST00000337331 P0C880 135 aa8.83□□□□□ -1
NPHP3-201ENST00000337331 TENM2Q9NT68 2774 aa8.83□□□□□ -1
NPHP3-201ENST00000337331 ZNF469Q96JG9 3925 aaPredicted RBP8.76□□□□□ -1.01
NPHP3-201ENST00000337331 KRTAP21-3Q3LHN1 58 aa8.72□□□□□ -1.01
NPHP3-201ENST00000337331 TRRAPQ9Y4A5 3859 aa8.71□□□□□ -1.02
NPHP3-201ENST00000337331 KRTAP1-4P0C5Y4 121 aa8.63□□□□□ -1.03
NPHP3-201ENST00000337331 COL7A1Q02388 2944 aa8.62□□□□□ -1.03
NPHP3-201ENST00000337331 AKAP9Q99996 3911 aa8.58□□□□□ -1.04
NPHP3-201ENST00000337331 TPRXLQ17RH7 258 aa8.55□□□□□ -1.04
NPHP3-201ENST00000337331 PLAC4Q8WY50 150 aa8.48□□□□□ -1.05
NPHP3-201ENST00000337331 FBN3Q75N90 2809 aa8.43□□□□□ -1.06
NPHP3-201ENST00000337331 CSMD3Q7Z407 3707 aa8.38□□□□□ -1.07
NPHP3-201ENST00000337331 XP32Q5T750 250 aa8.37□□□□□ -1.07
NPHP3-201ENST00000337331 KRTAP15-1Q3LI76 137 aa8.31□□□□□ -1.08
NPHP3-201ENST00000337331 MEGF8Q7Z7M0 2845 aa8.28□□□□□ -1.08
NPHP3-201ENST00000337331 KRTAP3-1Q9BYR8 98 aa8.26□□□□□ -1.09
NPHP3-201ENST00000337331 TNP1P09430 55 aa8.22□□□□□ -1.09
NPHP3-201ENST00000337331 KRTAP10-8P60410 259 aa8.21□□□□□ -1.1
NPHP3-201ENST00000337331 KRTAP12-2P59991 146 aa8.2□□□□□ -1.1
NPHP3-201ENST00000337331 KRTAP13-4Q3LI77 160 aa8.18□□□□□ -1.1
NPHP3-201ENST00000337331 A0A1B0GVY2 172 aa8.06□□□□□ -1.12
NPHP3-201ENST00000337331 KRTAP10-6P60371 365 aaPredicted RBP8.06□□□□□ -1.12
NPHP3-201ENST00000337331 HUWE1Q7Z6Z7 4374 aaKnown RBP8.06□□□□□ -1.12
NPHP3-201ENST00000337331 KRTAP12-1P59990 96 aa8.03□□□□□ -1.12
NPHP3-201ENST00000337331 PP632Q6XCG6 107 aa8.02□□□□□ -1.13
NPHP3-201ENST00000337331 DNHD1Q96M86 4753 aa7.93□□□□□ -1.14
NPHP3-201ENST00000337331 DNAH9Q9NYC9 4486 aa7.92□□□□□ -1.14
NPHP3-201ENST00000337331 KRTAP3-2Q9BYR7 98 aa7.83□□□□□ -1.16
NPHP3-201ENST00000337331 KRTAP10-10P60014 251 aa7.8□□□□□ -1.16
NPHP3-201ENST00000337331 ALMS1Q8TCU4 4167 aa7.8□□□□□ -1.16
NPHP3-201ENST00000337331 ANK2Q01484 3957 aa7.76□□□□□ -1.17
NPHP3-201ENST00000337331 KRTAP3-3Q9BYR6 98 aa7.75□□□□□ -1.17
NPHP3-201ENST00000337331 DNAH10Q8IVF4 4471 aa7.72□□□□□ -1.17
NPHP3-201ENST00000337331 PLECQ15149 4684 aaKnown RBP7.72□□□□□ -1.17
NPHP3-201ENST00000337331 PRKDCP78527 4128 aaKnown RBP7.71□□□□□ -1.17
NPHP3-201ENST00000337331 CMYA5Q8N3K9 4069 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms