RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 Q6ZRN7 208 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-202ENST00000336838 VCANP13611 3396 aa5.92□□□□□ -1.46
CCDC88A-202ENST00000336838 CELSR3Q9NYQ7 3312 aa5.91□□□□□ -1.46
CCDC88A-202ENST00000336838 UNC80Q8N2C7 3258 aa5.91□□□□□ -1.46
CCDC88A-202ENST00000336838 KRTAP25-1Q3LHN0 102 aa5.91□□□□□ -1.46
CCDC88A-202ENST00000336838 NOTCH2NLQ7Z3S9 236 aa5.9□□□□□ -1.46
CCDC88A-202ENST00000336838 KRTAP10-1P60331 282 aa5.89□□□□□ -1.47
CCDC88A-202ENST00000336838 TENM1Q9UKZ4 2725 aa5.89□□□□□ -1.47
CCDC88A-202ENST00000336838 SPTBN5Q9NRC6 3674 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-202ENST00000336838 KRTAP7-1Q8IUC3 87 aa5.87□□□□□ -1.47
CCDC88A-202ENST00000336838 COL6A3P12111 3177 aa5.86□□□□□ -1.47
CCDC88A-202ENST00000336838 KRTAP10-2P60368 255 aa5.85□□□□□ -1.47
CCDC88A-202ENST00000336838 Q5VSD8 79 aa5.84□□□□□ -1.47
CCDC88A-202ENST00000336838 TGP01266 2768 aa5.81□□□□□ -1.48
CCDC88A-202ENST00000336838 CRYBG3Q68DQ2 2970 aa5.81□□□□□ -1.48
CCDC88A-202ENST00000336838 ADM2Q7Z4H4 148 aa5.81□□□□□ -1.48
CCDC88A-202ENST00000336838 TENM3Q9P273 2699 aa5.8□□□□□ -1.48
CCDC88A-202ENST00000336838 FREM2Q5SZK8 3169 aa5.8□□□□□ -1.48
CCDC88A-202ENST00000336838 SZT2Q5T011 3432 aa5.8□□□□□ -1.48
CCDC88A-202ENST00000336838 A8MUU9 505 aa5.8□□□□□ -1.48
CCDC88A-202ENST00000336838 KRTAP11-1Q8IUC1 163 aa5.79□□□□□ -1.48
CCDC88A-202ENST00000336838 C20orf166-AS1Q96NR2 134 aa5.78□□□□□ -1.48
CCDC88A-202ENST00000336838 KRTAP16-1A8MUX0 517 aa5.76□□□□□ -1.49
CCDC88A-202ENST00000336838 DMXL1Q9Y485 3027 aa5.76□□□□□ -1.49
CCDC88A-202ENST00000336838 KRTAP13-2Q52LG2 175 aa5.75□□□□□ -1.49
CCDC88A-202ENST00000336838 M0R2T5 61 aa5.75□□□□□ -1.49
CCDC88A-202ENST00000336838 TENM4Q6N022 2769 aa5.75□□□□□ -1.49
CCDC88A-202ENST00000336838 PDZD2O15018 2839 aa5.74□□□□□ -1.49
CCDC88A-202ENST00000336838 PP632Q6XCG6 107 aa5.72□□□□□ -1.49
CCDC88A-202ENST00000336838 PLAC4Q8WY50 150 aa5.71□□□□□ -1.49
CCDC88A-202ENST00000336838 REV3LO60673 3130 aa5.71□□□□□ -1.5
CCDC88A-202ENST00000336838 CELSR1Q9NYQ6 3014 aa5.7□□□□□ -1.5
CCDC88A-202ENST00000336838 VWFP04275 2813 aa5.69□□□□□ -1.5
CCDC88A-202ENST00000336838 KRTAP21-3Q3LHN1 58 aa5.68□□□□□ -1.5
CCDC88A-202ENST00000336838 EYSQ5T1H1 3165 aa5.63□□□□□ -1.51
CCDC88A-202ENST00000336838 CFAP47Q6ZTR5 3102 aa5.62□□□□□ -1.51
CCDC88A-202ENST00000336838 A8MU10 97 aa5.59□□□□□ -1.51
CCDC88A-202ENST00000336838 LOC400499M0QZD8 3231 aa5.57□□□□□ -1.52
CCDC88A-202ENST00000336838 TNP1P09430 55 aa5.56□□□□□ -1.52
CCDC88A-202ENST00000336838 KRTAP1-4P0C5Y4 121 aa5.54□□□□□ -1.52
CCDC88A-202ENST00000336838 NDUFAF8A1L188 74 aa5.53□□□□□ -1.52
CCDC88A-202ENST00000336838 H0YAA0 97 aa5.53□□□□□ -1.52
CCDC88A-202ENST00000336838 PKD1L1Q8TDX9 2849 aa5.49□□□□□ -1.53
CCDC88A-202ENST00000336838 KRTAP13-3Q3SY46 172 aa5.49□□□□□ -1.53
CCDC88A-202ENST00000336838 TENM2Q9NT68 2774 aa5.47□□□□□ -1.53
CCDC88A-202ENST00000336838 TPRXLQ17RH7 258 aa5.47□□□□□ -1.53
CCDC88A-202ENST00000336838 SPEGQ15772 3267 aa5.44□□□□□ -1.54
CCDC88A-202ENST00000336838 XP32Q5T750 250 aa5.43□□□□□ -1.54
CCDC88A-202ENST00000336838 WDFY3Q8IZQ1 3526 aa5.43□□□□□ -1.54
CCDC88A-202ENST00000336838 MYO15AQ9UKN7 3530 aa5.42□□□□□ -1.54
CCDC88A-202ENST00000336838 P0C880 135 aa5.41□□□□□ -1.54
CCDC88A-202ENST00000336838 SPENQ96T58 3664 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-202ENST00000336838 FBN1P35555 2871 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-202ENST00000336838 MEGF8Q7Z7M0 2845 aa5.32□□□□□ -1.56
CCDC88A-202ENST00000336838 NBPF19A0A087WUL8 3843 aa5.32□□□□□ -1.56
CCDC88A-202ENST00000336838 C10orf95Q9H7T3 257 aa5.31□□□□□ -1.56
CCDC88A-202ENST00000336838 LAMA5O15230 3695 aa5.3□□□□□ -1.56
CCDC88A-202ENST00000336838 SRRM2Q9UQ35 2752 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-202ENST00000336838 COL7A1Q02388 2944 aa5.27□□□□□ -1.57
CCDC88A-202ENST00000336838 FBN3Q75N90 2809 aa5.24□□□□□ -1.57
CCDC88A-202ENST00000336838 PRO2289Q9P1D8 64 aa5.22□□□□□ -1.57
CCDC88A-202ENST00000336838 ZFHX4Q86UP3 3567 aa5.22□□□□□ -1.57
CCDC88A-202ENST00000336838 ASPMQ8IZT6 3477 aa5.22□□□□□ -1.57
CCDC88A-202ENST00000336838 OTOGQ6ZRI0 2925 aa5.22□□□□□ -1.57
CCDC88A-202ENST00000336838 DMDP11532 3685 aa5.2□□□□□ -1.58
CCDC88A-202ENST00000336838 SMG1Q96Q15 3661 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-202ENST00000336838 RELNP78509 3460 aa5.18□□□□□ -1.58
CCDC88A-202ENST00000336838 KRTAP13-4Q3LI77 160 aa5.15□□□□□ -1.58
CCDC88A-202ENST00000336838 KRTAP10-8P60410 259 aa5.15□□□□□ -1.59
CCDC88A-202ENST00000336838 ZFHX3Q15911 3703 aa5.14□□□□□ -1.59
CCDC88A-202ENST00000336838 DCHS1Q96JQ0 3298 aa5.14□□□□□ -1.59
CCDC88A-202ENST00000336838 AKAP9Q99996 3911 aa5.14□□□□□ -1.59
CCDC88A-202ENST00000336838 TRRAPQ9Y4A5 3859 aa5.14□□□□□ -1.59
CCDC88A-202ENST00000336838 VPS13CQ709C8 3753 aa5.12□□□□□ -1.59
CCDC88A-202ENST00000336838 A0A1B0GVY2 172 aa5.12□□□□□ -1.59
CCDC88A-202ENST00000336838 CSMD1Q96PZ7 3565 aa5.11□□□□□ -1.59
CCDC88A-202ENST00000336838 BSNQ9UPA5 3926 aa5.09□□□□□ -1.59
CCDC88A-202ENST00000336838 KRTAP12-2P59991 146 aa5.08□□□□□ -1.6
CCDC88A-202ENST00000336838 KRTAP12-1P59990 96 aa5.06□□□□□ -1.6
CCDC88A-202ENST00000336838 KRTAP3-1Q9BYR8 98 aa4.99□□□□□ -1.61
CCDC88A-202ENST00000336838 SVEP1Q4LDE5 3571 aa4.97□□□□□ -1.61
CCDC88A-202ENST00000336838 KRTAP10-10P60014 251 aa4.96□□□□□ -1.62
CCDC88A-202ENST00000336838 KRTAP10-6P60371 365 aaPredicted RBP4.95□□□□□ -1.62
CCDC88A-202ENST00000336838 KRTAP23-1A1A580 65 aa4.92□□□□□ -1.62
CCDC88A-202ENST00000336838 INE1O15225 51 aa4.88□□□□□ -1.63
CCDC88A-202ENST00000336838 KRTAP15-1Q3LI76 137 aa4.84□□□□□ -1.63
CCDC88A-202ENST00000336838 MUC3AQ02505 3323 aa4.83□□□□□ -1.64
CCDC88A-202ENST00000336838 CUBNO60494 3623 aa4.79□□□□□ -1.64
CCDC88A-202ENST00000336838 KRTAP3-2Q9BYR7 98 aa4.77□□□□□ -1.65
CCDC88A-202ENST00000336838 ALMS1Q8TCU4 4167 aa4.76□□□□□ -1.65
CCDC88A-202ENST00000336838 KRTAP3-3Q9BYR6 98 aa4.75□□□□□ -1.65
CCDC88A-202ENST00000336838 ANK3Q12955 4377 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-202ENST00000336838 ZNF469Q96JG9 3925 aaPredicted RBP4.7□□□□□ -1.66
CCDC88A-202ENST00000336838 DNAH3Q8TD57 4116 aa4.65□□□□□ -1.67
CCDC88A-202ENST00000336838 KRTAP10-4P60372 401 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-202ENST00000336838 MT1HL1P0DM35 61 aa4.62□□□□□ -1.67
CCDC88A-202ENST00000336838 CSMD2Q7Z408 3487 aa4.61□□□□□ -1.67
CCDC88A-202ENST00000336838 HECTD4Q9Y4D8 3996 aa4.6□□□□□ -1.67
CCDC88A-202ENST00000336838 CSMD3Q7Z407 3707 aa4.59□□□□□ -1.67
CCDC88A-202ENST00000336838 KRTAP10-12P60413 245 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms