RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 NBEAL2Q6ZNJ1 2754 aa3.29□□□□□ -1.88
CDC42BPA-201ENST00000334218 USP34Q70CQ2 3546 aa3.29□□□□□ -1.88
CDC42BPA-201ENST00000334218 Q6ZRN7 208 aaPredicted RBP3.28□□□□□ -1.88
CDC42BPA-201ENST00000334218 SZT2Q5T011 3432 aa3.28□□□□□ -1.88
CDC42BPA-201ENST00000334218 COL6A3P12111 3177 aa3.27□□□□□ -1.89
CDC42BPA-201ENST00000334218 TRIOO75962 3097 aa3.25□□□□□ -1.89
CDC42BPA-201ENST00000334218 UNC80Q8N2C7 3258 aa3.25□□□□□ -1.89
CDC42BPA-201ENST00000334218 CFAP54Q96N23 3096 aa3.24□□□□□ -1.89
CDC42BPA-201ENST00000334218 MXRA5Q9NR99 2828 aa3.24□□□□□ -1.89
CDC42BPA-201ENST00000334218 WDFY4Q6ZS81 3184 aa3.24□□□□□ -1.89
CDC42BPA-201ENST00000334218 NBEAQ8NFP9 2946 aa3.24□□□□□ -1.89
CDC42BPA-201ENST00000334218 KRTAP15-1Q3LI76 137 aa3.23□□□□□ -1.89
CDC42BPA-201ENST00000334218 MGAQ8IWI9 3026 aa3.23□□□□□ -1.89
CDC42BPA-201ENST00000334218 TACC2O95359 2948 aa3.22□□□□□ -1.89
CDC42BPA-201ENST00000334218 TENM4Q6N022 2769 aa3.22□□□□□ -1.89
CDC42BPA-201ENST00000334218 KRTAP10-8P60410 259 aa3.21□□□□□ -1.9
CDC42BPA-201ENST00000334218 ZFHX3Q15911 3703 aa3.21□□□□□ -1.9
CDC42BPA-201ENST00000334218 HRNRQ86YZ3 2850 aaPredicted RBP3.2□□□□□ -1.9
CDC42BPA-201ENST00000334218 VPS13AQ96RL7 3174 aa3.2□□□□□ -1.9
CDC42BPA-201ENST00000334218 LRBAP50851 2863 aa3.2□□□□□ -1.9
CDC42BPA-201ENST00000334218 KRTAP13-4Q3LI77 160 aa3.19□□□□□ -1.9
CDC42BPA-201ENST00000334218 DMDP11532 3685 aa3.19□□□□□ -1.9
CDC42BPA-201ENST00000334218 TENM1Q9UKZ4 2725 aa3.19□□□□□ -1.9
CDC42BPA-201ENST00000334218 KRTAP13-2Q52LG2 175 aa3.18□□□□□ -1.9
CDC42BPA-201ENST00000334218 TPRXLQ17RH7 258 aa3.17□□□□□ -1.9
CDC42BPA-201ENST00000334218 TGP01266 2768 aa3.17□□□□□ -1.9
CDC42BPA-201ENST00000334218 CELSR3Q9NYQ7 3312 aa3.17□□□□□ -1.9
CDC42BPA-201ENST00000334218 LAMA1P25391 3075 aa3.16□□□□□ -1.9
CDC42BPA-201ENST00000334218 VWFP04275 2813 aa3.15□□□□□ -1.9
CDC42BPA-201ENST00000334218 KRTAP10-1P60331 282 aa3.15□□□□□ -1.91
CDC42BPA-201ENST00000334218 EYSQ5T1H1 3165 aa3.13□□□□□ -1.91
CDC42BPA-201ENST00000334218 VCANP13611 3396 aa3.12□□□□□ -1.91
CDC42BPA-201ENST00000334218 KRTAP10-2P60368 255 aa3.12□□□□□ -1.91
CDC42BPA-201ENST00000334218 KRTAP12-2P59991 146 aa3.11□□□□□ -1.91
CDC42BPA-201ENST00000334218 KALRNO60229 2985 aa3.11□□□□□ -1.91
CDC42BPA-201ENST00000334218 KRTAP1-5Q9BYS1 174 aa3.11□□□□□ -1.91
CDC42BPA-201ENST00000334218 TENM2Q9NT68 2774 aa3.1□□□□□ -1.91
CDC42BPA-201ENST00000334218 ASPMQ8IZT6 3477 aa3.1□□□□□ -1.91
CDC42BPA-201ENST00000334218 FRYLO94915 3013 aa3.1□□□□□ -1.91
CDC42BPA-201ENST00000334218 DMXL2Q8TDJ6 3036 aa3.1□□□□□ -1.91
CDC42BPA-201ENST00000334218 COL12A1Q99715 3063 aa3.1□□□□□ -1.91
CDC42BPA-201ENST00000334218 LAMA5O15230 3695 aa3.09□□□□□ -1.91
CDC42BPA-201ENST00000334218 SPENQ96T58 3664 aaKnown RBP3.09□□□□□ -1.91
CDC42BPA-201ENST00000334218 SPEGQ15772 3267 aa3.09□□□□□ -1.91
CDC42BPA-201ENST00000334218 ZZEF1O43149 2961 aa3.07□□□□□ -1.92
CDC42BPA-201ENST00000334218 CELSR2Q9HCU4 2923 aa3.06□□□□□ -1.92
CDC42BPA-201ENST00000334218 REV3LO60673 3130 aa3.05□□□□□ -1.92
CDC42BPA-201ENST00000334218 BOD1L1Q8NFC6 3051 aa3.05□□□□□ -1.92
CDC42BPA-201ENST00000334218 FREM2Q5SZK8 3169 aa3.04□□□□□ -1.92
CDC42BPA-201ENST00000334218 FRYQ5TBA9 3013 aa3.04□□□□□ -1.92
CDC42BPA-201ENST00000334218 ATMQ13315 3056 aa3.04□□□□□ -1.92
CDC42BPA-201ENST00000334218 PDZD2O15018 2839 aa3.03□□□□□ -1.92
CDC42BPA-201ENST00000334218 SMG1Q96Q15 3661 aaKnown RBP3.03□□□□□ -1.92
CDC42BPA-201ENST00000334218 DMXL1Q9Y485 3027 aa3.03□□□□□ -1.92
CDC42BPA-201ENST00000334218 ZFHX4Q86UP3 3567 aa3.02□□□□□ -1.93
CDC42BPA-201ENST00000334218 ADGRG4Q8IZF6 3080 aa3.01□□□□□ -1.93
CDC42BPA-201ENST00000334218 OTOGQ6ZRI0 2925 aa3.01□□□□□ -1.93
CDC42BPA-201ENST00000334218 KRTAP13-1Q8IUC0 172 aa3□□□□□ -1.93
CDC42BPA-201ENST00000334218 FBN2P35556 2912 aa3□□□□□ -1.93
CDC42BPA-201ENST00000334218 PKD1L1Q8TDX9 2849 aa3□□□□□ -1.93
CDC42BPA-201ENST00000334218 MEGF8Q7Z7M0 2845 aa2.99□□□□□ -1.93
CDC42BPA-201ENST00000334218 DCHS2Q6V1P9 2916 aa2.97□□□□□ -1.93
CDC42BPA-201ENST00000334218 XP32Q5T750 250 aa2.97□□□□□ -1.93
CDC42BPA-201ENST00000334218 KRTAP12-1P59990 96 aa2.95□□□□□ -1.94
CDC42BPA-201ENST00000334218 CFAP47Q6ZTR5 3102 aa2.93□□□□□ -1.94
CDC42BPA-201ENST00000334218 ASH1LQ9NR48 2969 aaKnown RBP2.93□□□□□ -1.94
CDC42BPA-201ENST00000334218 LOC400499M0QZD8 3231 aa2.92□□□□□ -1.94
CDC42BPA-201ENST00000334218 RELNP78509 3460 aa2.92□□□□□ -1.94
CDC42BPA-201ENST00000334218 NBPF19A0A087WUL8 3843 aa2.92□□□□□ -1.94
CDC42BPA-201ENST00000334218 A0A1B0GVY2 172 aa2.91□□□□□ -1.94
CDC42BPA-201ENST00000334218 SVEP1Q4LDE5 3571 aa2.91□□□□□ -1.94
CDC42BPA-201ENST00000334218 CRYBG3Q68DQ2 2970 aa2.91□□□□□ -1.94
CDC42BPA-201ENST00000334218 KRTAP13-3Q3SY46 172 aa2.9□□□□□ -1.94
CDC42BPA-201ENST00000334218 CSMD1Q96PZ7 3565 aa2.9□□□□□ -1.94
CDC42BPA-201ENST00000334218 VPS13CQ709C8 3753 aa2.9□□□□□ -1.95
CDC42BPA-201ENST00000334218 DCHS1Q96JQ0 3298 aa2.9□□□□□ -1.95
CDC42BPA-201ENST00000334218 FBN1P35555 2871 aaKnown RBP2.87□□□□□ -1.95
CDC42BPA-201ENST00000334218 MUC3AQ02505 3323 aa2.86□□□□□ -1.95
CDC42BPA-201ENST00000334218 ANK3Q12955 4377 aaKnown RBP2.85□□□□□ -1.95
CDC42BPA-201ENST00000334218 KRTAP3-3Q9BYR6 98 aa2.83□□□□□ -1.96
CDC42BPA-201ENST00000334218 KRTAP3-2Q9BYR7 98 aa2.83□□□□□ -1.96
CDC42BPA-201ENST00000334218 CUBNO60494 3623 aa2.82□□□□□ -1.96
CDC42BPA-201ENST00000334218 KRTAP7-1Q8IUC3 87 aa2.82□□□□□ -1.96
CDC42BPA-201ENST00000334218 KRTAP1-4P0C5Y4 121 aa2.81□□□□□ -1.96
CDC42BPA-201ENST00000334218 AKAP9Q99996 3911 aa2.76□□□□□ -1.97
CDC42BPA-201ENST00000334218 CELSR1Q9NYQ6 3014 aa2.76□□□□□ -1.97
CDC42BPA-201ENST00000334218 ALMS1Q8TCU4 4167 aa2.76□□□□□ -1.97
CDC42BPA-201ENST00000334218 CSMD2Q7Z408 3487 aa2.73□□□□□ -1.97
CDC42BPA-201ENST00000334218 KRTAP10-10P60014 251 aa2.69□□□□□ -1.98
CDC42BPA-201ENST00000334218 BSNQ9UPA5 3926 aa2.69□□□□□ -1.98
CDC42BPA-201ENST00000334218 KRTAP3-1Q9BYR8 98 aa2.68□□□□□ -1.98
CDC42BPA-201ENST00000334218 FBN3Q75N90 2809 aa2.68□□□□□ -1.98
CDC42BPA-201ENST00000334218 KRTAP10-6P60371 365 aaPredicted RBP2.67□□□□□ -1.98
CDC42BPA-201ENST00000334218 COL7A1Q02388 2944 aa2.66□□□□□ -1.98
CDC42BPA-201ENST00000334218 HUWE1Q7Z6Z7 4374 aaKnown RBP2.65□□□□□ -1.99
CDC42BPA-201ENST00000334218 KRTAP10-12P60413 245 aa2.64□□□□□ -1.99
CDC42BPA-201ENST00000334218 DNAH9Q9NYC9 4486 aa2.62□□□□□ -1.99
CDC42BPA-201ENST00000334218 KRTAP12-3P60328 96 aa2.62□□□□□ -1.99
CDC42BPA-201ENST00000334218 CSMD3Q7Z407 3707 aa2.62□□□□□ -1.99
CDC42BPA-201ENST00000334218 TRRAPQ9Y4A5 3859 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms