RNA–Protein interactions for RNA: ENST00000331920.10

PTCH1-201, Transcript of patched 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTCH1, Length 8,057 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-201ENST00000331920 CFAP47Q6ZTR5 3102 aa8.85□□□□□ -0.99
PTCH1-201ENST00000331920 PRO2289Q9P1D8 64 aa8.84□□□□□ -0.99
PTCH1-201ENST00000331920 ASH1LQ9NR48 2969 aaKnown RBP8.83□□□□□ -1
PTCH1-201ENST00000331920 UTP20O75691 2785 aaKnown RBP8.81□□□□□ -1
PTCH1-201ENST00000331920 DMXL2Q8TDJ6 3036 aa8.8□□□□□ -1
PTCH1-201ENST00000331920 SPEGQ15772 3267 aa8.79□□□□□ -1
PTCH1-201ENST00000331920 CDH23Q9H251 3354 aa8.79□□□□□ -1
PTCH1-201ENST00000331920 COL12A1Q99715 3063 aa8.77□□□□□ -1.01
PTCH1-201ENST00000331920 KRTAP7-1Q8IUC3 87 aa8.75□□□□□ -1.01
PTCH1-201ENST00000331920 COL6A3P12111 3177 aa8.75□□□□□ -1.01
PTCH1-201ENST00000331920 H0YAA0 97 aa8.75□□□□□ -1.01
PTCH1-201ENST00000331920 VCANP13611 3396 aa8.72□□□□□ -1.01
PTCH1-201ENST00000331920 LAMA1P25391 3075 aa8.7□□□□□ -1.02
PTCH1-201ENST00000331920 NBEAQ8NFP9 2946 aa8.69□□□□□ -1.02
PTCH1-201ENST00000331920 SZT2Q5T011 3432 aa8.69□□□□□ -1.02
PTCH1-201ENST00000331920 LRBAP50851 2863 aa8.68□□□□□ -1.02
PTCH1-201ENST00000331920 ITPR1Q14643 2758 aa8.67□□□□□ -1.02
PTCH1-201ENST00000331920 XP32Q5T750 250 aa8.65□□□□□ -1.02
PTCH1-201ENST00000331920 KRTAP13-1Q8IUC0 172 aa8.64□□□□□ -1.03
PTCH1-201ENST00000331920 ATMQ13315 3056 aa8.61□□□□□ -1.03
PTCH1-201ENST00000331920 FRYLO94915 3013 aa8.61□□□□□ -1.03
PTCH1-201ENST00000331920 HIVEP1P15822 2718 aa8.57□□□□□ -1.04
PTCH1-201ENST00000331920 USP34Q70CQ2 3546 aa8.5□□□□□ -1.05
PTCH1-201ENST00000331920 BOD1L1Q8NFC6 3051 aa8.5□□□□□ -1.05
PTCH1-201ENST00000331920 ZZEF1O43149 2961 aa8.48□□□□□ -1.05
PTCH1-201ENST00000331920 KRTAP12-2P59991 146 aa8.45□□□□□ -1.06
PTCH1-201ENST00000331920 ADGRG4Q8IZF6 3080 aa8.42□□□□□ -1.06
PTCH1-201ENST00000331920 TACC2O95359 2948 aa8.39□□□□□ -1.07
PTCH1-201ENST00000331920 FLNCQ14315 2725 aa8.38□□□□□ -1.07
PTCH1-201ENST00000331920 ASPMQ8IZT6 3477 aa8.38□□□□□ -1.07
PTCH1-201ENST00000331920 TPRXLQ17RH7 258 aa8.36□□□□□ -1.07
PTCH1-201ENST00000331920 ZFHX4Q86UP3 3567 aa8.33□□□□□ -1.08
PTCH1-201ENST00000331920 TENM1Q9UKZ4 2725 aa8.32□□□□□ -1.08
PTCH1-201ENST00000331920 MYO15AQ9UKN7 3530 aa8.31□□□□□ -1.08
PTCH1-201ENST00000331920 CELSR2Q9HCU4 2923 aa8.29□□□□□ -1.08
PTCH1-201ENST00000331920 CELSR1Q9NYQ6 3014 aa8.27□□□□□ -1.08
PTCH1-201ENST00000331920 SPTBN5Q9NRC6 3674 aaKnown RBP8.27□□□□□ -1.09
PTCH1-201ENST00000331920 KRTAP1-4P0C5Y4 121 aa8.27□□□□□ -1.09
PTCH1-201ENST00000331920 TNRC18O15417 2968 aaPredicted RBP8.26□□□□□ -1.09
PTCH1-201ENST00000331920 LOC400499M0QZD8 3231 aa8.26□□□□□ -1.09
PTCH1-201ENST00000331920 WDFY3Q8IZQ1 3526 aa8.25□□□□□ -1.09
PTCH1-201ENST00000331920 TENM3Q9P273 2699 aa8.24□□□□□ -1.09
PTCH1-201ENST00000331920 KRTAP15-1Q3LI76 137 aa8.24□□□□□ -1.09
PTCH1-201ENST00000331920 TGP01266 2768 aa8.23□□□□□ -1.09
PTCH1-201ENST00000331920 DMXL1Q9Y485 3027 aa8.23□□□□□ -1.09
PTCH1-201ENST00000331920 DCHS1Q96JQ0 3298 aa8.2□□□□□ -1.1
PTCH1-201ENST00000331920 CRCT1Q9UGL9 99 aa8.17□□□□□ -1.1
PTCH1-201ENST00000331920 NF1P21359 2839 aa8.16□□□□□ -1.1
PTCH1-201ENST00000331920 KRTAP13-3Q3SY46 172 aa8.15□□□□□ -1.1
PTCH1-201ENST00000331920 NBPF19A0A087WUL8 3843 aa8.14□□□□□ -1.11
PTCH1-201ENST00000331920 KRTAP13-4Q3LI77 160 aa8.13□□□□□ -1.11
PTCH1-201ENST00000331920 ZANQ9Y493 2812 aa8.1□□□□□ -1.11
PTCH1-201ENST00000331920 HRNRQ86YZ3 2850 aaPredicted RBP8.05□□□□□ -1.12
PTCH1-201ENST00000331920 NIPBLQ6KC79 2804 aaeCLIP8.05□□□□□ -1.12
PTCH1-201ENST00000331920 DCHS2Q6V1P9 2916 aa8.04□□□□□ -1.12
PTCH1-201ENST00000331920 PDZD2O15018 2839 aa8.04□□□□□ -1.12
PTCH1-201ENST00000331920 LAMA5O15230 3695 aa8.04□□□□□ -1.12
PTCH1-201ENST00000331920 EYSQ5T1H1 3165 aa8.03□□□□□ -1.12
PTCH1-201ENST00000331920 KRTAP12-1P59990 96 aa7.95□□□□□ -1.14
PTCH1-201ENST00000331920 TENM4Q6N022 2769 aa7.92□□□□□ -1.14
PTCH1-201ENST00000331920 CSMD1Q96PZ7 3565 aa7.91□□□□□ -1.14
PTCH1-201ENST00000331920 VWFP04275 2813 aa7.89□□□□□ -1.15
PTCH1-201ENST00000331920 FBN2P35556 2912 aa7.89□□□□□ -1.15
PTCH1-201ENST00000331920 KRTAP21-3Q3LHN1 58 aa7.86□□□□□ -1.15
PTCH1-201ENST00000331920 MXRA5Q9NR99 2828 aa7.85□□□□□ -1.15
PTCH1-201ENST00000331920 RELNP78509 3460 aa7.84□□□□□ -1.15
PTCH1-201ENST00000331920 PKD1L1Q8TDX9 2849 aa7.82□□□□□ -1.16
PTCH1-201ENST00000331920 INE1O15225 51 aa7.75□□□□□ -1.17
PTCH1-201ENST00000331920 SMG1Q96Q15 3661 aaKnown RBP7.74□□□□□ -1.17
PTCH1-201ENST00000331920 TENM2Q9NT68 2774 aa7.73□□□□□ -1.17
PTCH1-201ENST00000331920 SRRM2Q9UQ35 2752 aaKnown RBP7.71□□□□□ -1.18
PTCH1-201ENST00000331920 SPENQ96T58 3664 aaKnown RBP7.69□□□□□ -1.18
PTCH1-201ENST00000331920 KRTAP10-12P60413 245 aa7.57□□□□□ -1.2
PTCH1-201ENST00000331920 ZFHX3Q15911 3703 aa7.54□□□□□ -1.2
PTCH1-201ENST00000331920 DMDP11532 3685 aa7.53□□□□□ -1.2
PTCH1-201ENST00000331920 CUBNO60494 3623 aa7.52□□□□□ -1.21
PTCH1-201ENST00000331920 KRTAP3-1Q9BYR8 98 aa7.48□□□□□ -1.21
PTCH1-201ENST00000331920 COL7A1Q02388 2944 aa7.44□□□□□ -1.22
PTCH1-201ENST00000331920 KRTAP10-5P60370 271 aa7.42□□□□□ -1.22
PTCH1-201ENST00000331920 MEGF8Q7Z7M0 2845 aa7.41□□□□□ -1.22
PTCH1-201ENST00000331920 KRTAP10-6P60371 365 aaPredicted RBP7.37□□□□□ -1.23
PTCH1-201ENST00000331920 SVEP1Q4LDE5 3571 aa7.34□□□□□ -1.23
PTCH1-201ENST00000331920 MUC3AQ02505 3323 aa7.3□□□□□ -1.24
PTCH1-201ENST00000331920 KRTAP12-3P60328 96 aa7.29□□□□□ -1.24
PTCH1-201ENST00000331920 CSMD3Q7Z407 3707 aa7.24□□□□□ -1.25
PTCH1-201ENST00000331920 LCE3AQ5TA76 89 aa7.21□□□□□ -1.26
PTCH1-201ENST00000331920 FBN3Q75N90 2809 aa7.14□□□□□ -1.27
PTCH1-201ENST00000331920 VPS13CQ709C8 3753 aa7.12□□□□□ -1.27
PTCH1-201ENST00000331920 FBN1P35555 2871 aaKnown RBP7.09□□□□□ -1.27
PTCH1-201ENST00000331920 CSMD2Q7Z408 3487 aa7.07□□□□□ -1.28
PTCH1-201ENST00000331920 TRRAPQ9Y4A5 3859 aa7.07□□□□□ -1.28
PTCH1-201ENST00000331920 LORP23490 312 aaPredicted RBP7.05□□□□□ -1.28
PTCH1-201ENST00000331920 KRTAP8-1Q8IUC2 63 aa7.04□□□□□ -1.28
PTCH1-201ENST00000331920 OTOGQ6ZRI0 2925 aa7.03□□□□□ -1.28
PTCH1-201ENST00000331920 BSNQ9UPA5 3926 aa6.97□□□□□ -1.29
PTCH1-201ENST00000331920 KRTAP3-3Q9BYR6 98 aa6.95□□□□□ -1.3
PTCH1-201ENST00000331920 KRTAP3-2Q9BYR7 98 aa6.95□□□□□ -1.3
PTCH1-201ENST00000331920 MT1HL1P0DM35 61 aa6.77□□□□□ -1.33
PTCH1-201ENST00000331920 KRTAP23-1A1A580 65 aa6.75□□□□□ -1.33
PTCH1-201ENST00000331920 KRTAP4-5Q9BYR2 181 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms