RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SPENQ96T58 3664 aaKnown RBP8.73□□□□□ -1.01
TCOF1-201ENST00000323668 A0A087X002 238 aa8.72□□□□□ -1.01
TCOF1-201ENST00000323668 NOTCH2NLQ7Z3S9 236 aa8.72□□□□□ -1.01
TCOF1-201ENST00000323668 Q6ZRN7 208 aaPredicted RBP8.71□□□□□ -1.02
TCOF1-201ENST00000323668 KRTAP13-1Q8IUC0 172 aa8.7□□□□□ -1.02
TCOF1-201ENST00000323668 TENM1Q9UKZ4 2725 aa8.7□□□□□ -1.02
TCOF1-201ENST00000323668 VWFP04275 2813 aa8.69□□□□□ -1.02
TCOF1-201ENST00000323668 CUBNO60494 3623 aa8.67□□□□□ -1.02
TCOF1-201ENST00000323668 DMAC1Q96GE9 116 aa8.67□□□□□ -1.02
TCOF1-201ENST00000323668 BSNQ9UPA5 3926 aa8.65□□□□□ -1.02
TCOF1-201ENST00000323668 PDZD2O15018 2839 aa8.62□□□□□ -1.03
TCOF1-201ENST00000323668 KRTAP10-2P60368 255 aa8.6□□□□□ -1.03
TCOF1-201ENST00000323668 PRAC1Q96KF2 57 aa8.58□□□□□ -1.04
TCOF1-201ENST00000323668 TENM4Q6N022 2769 aa8.57□□□□□ -1.04
TCOF1-201ENST00000323668 A8MU10 97 aa8.57□□□□□ -1.04
TCOF1-201ENST00000323668 KRTAP10-1P60331 282 aa8.57□□□□□ -1.04
TCOF1-201ENST00000323668 A0A1B0GU33 70 aa8.55□□□□□ -1.04
TCOF1-201ENST00000323668 ASB16-AS1Q495Z4 193 aa8.55□□□□□ -1.04
TCOF1-201ENST00000323668 DMBT1Q9UGM3 2413 aaPredicted RBP8.53□□□□□ -1.04
TCOF1-201ENST00000323668 LINC01554Q52M75 96 aa8.5□□□□□ -1.05
TCOF1-201ENST00000323668 OTOGQ6ZRI0 2925 aa8.49□□□□□ -1.05
TCOF1-201ENST00000323668 A6NN06 94 aa8.48□□□□□ -1.05
TCOF1-201ENST00000323668 CSMD2Q7Z408 3487 aa8.46□□□□□ -1.06
TCOF1-201ENST00000323668 FBN1P35555 2871 aaKnown RBP8.45□□□□□ -1.06
TCOF1-201ENST00000323668 SPATA8Q6RVD6 105 aa8.43□□□□□ -1.06
TCOF1-201ENST00000323668 SPINT4Q6UDR6 99 aa8.43□□□□□ -1.06
TCOF1-201ENST00000323668 A0A0D9SG42 100 aa8.42□□□□□ -1.06
TCOF1-201ENST00000323668 PKD1L1Q8TDX9 2849 aa8.42□□□□□ -1.06
TCOF1-201ENST00000323668 KRTAP13-2Q52LG2 175 aa8.42□□□□□ -1.06
TCOF1-201ENST00000323668 CSAG1Q6PB30 78 aa8.4□□□□□ -1.06
TCOF1-201ENST00000323668 NBPF19A0A087WUL8 3843 aa8.39□□□□□ -1.07
TCOF1-201ENST00000323668 CRIPTQ9P021 101 aa8.38□□□□□ -1.07
TCOF1-201ENST00000323668 H1FX-AS1Q4G0G2 97 aa8.27□□□□□ -1.09
TCOF1-201ENST00000323668 RPS29P62273 56 aaKnown RBP8.26□□□□□ -1.09
TCOF1-201ENST00000323668 TGP01266 2768 aa8.25□□□□□ -1.09
TCOF1-201ENST00000323668 COX6B2Q6YFQ2 88 aa8.24□□□□□ -1.09
TCOF1-201ENST00000323668 ADM2Q7Z4H4 148 aa8.23□□□□□ -1.09
TCOF1-201ENST00000323668 TENM2Q9NT68 2774 aa8.22□□□□□ -1.09
TCOF1-201ENST00000323668 ANK3Q12955 4377 aaKnown RBP8.2□□□□□ -1.1
TCOF1-201ENST00000323668 FLG2Q5D862 2391 aaPredicted RBP8.2□□□□□ -1.1
TCOF1-201ENST00000323668 S4R3F8 94 aa8.19□□□□□ -1.1
TCOF1-201ENST00000323668 VPS13CQ709C8 3753 aa8.19□□□□□ -1.1
TCOF1-201ENST00000323668 RPL37P61927 97 aaKnown RBP8.18□□□□□ -1.1
TCOF1-201ENST00000323668 TRRAPQ9Y4A5 3859 aa8.18□□□□□ -1.1
TCOF1-201ENST00000323668 ZFHX3Q15911 3703 aa8.18□□□□□ -1.1
TCOF1-201ENST00000323668 Q6ZSA8 131 aa8.17□□□□□ -1.1
TCOF1-201ENST00000323668 KRTAP1-4P0C5Y4 121 aa8.15□□□□□ -1.11
TCOF1-201ENST00000323668 ROMO1P60602 79 aa8.11□□□□□ -1.11
TCOF1-201ENST00000323668 KRTAP13-3Q3SY46 172 aa8.1□□□□□ -1.11
TCOF1-201ENST00000323668 SRRM2Q9UQ35 2752 aaKnown RBP8.1□□□□□ -1.11
TCOF1-201ENST00000323668 KRTAP16-1A8MUX0 517 aa8.09□□□□□ -1.11
TCOF1-201ENST00000323668 J3QL48 77 aa8.08□□□□□ -1.12
TCOF1-201ENST00000323668 A8MUU9 505 aa8.07□□□□□ -1.12
TCOF1-201ENST00000323668 H3BS24 57 aa8.06□□□□□ -1.12
TCOF1-201ENST00000323668 Q5VSD8 79 aa8.06□□□□□ -1.12
TCOF1-201ENST00000323668 C20orf166-AS1Q96NR2 134 aa8.05□□□□□ -1.12
TCOF1-201ENST00000323668 KRTAP25-1Q3LHN0 102 aa8.02□□□□□ -1.13
TCOF1-201ENST00000323668 FBN3Q75N90 2809 aa7.96□□□□□ -1.14
TCOF1-201ENST00000323668 ZNF469Q96JG9 3925 aaPredicted RBP7.95□□□□□ -1.14
TCOF1-201ENST00000323668 R4GN34 69 aa7.93□□□□□ -1.14
TCOF1-201ENST00000323668 H0YAA0 97 aa7.89□□□□□ -1.15
TCOF1-201ENST00000323668 CAMK2N1Q7Z7J9 78 aa7.87□□□□□ -1.15
TCOF1-201ENST00000323668 M0QZ58 72 aa7.84□□□□□ -1.15
TCOF1-201ENST00000323668 MEGF8Q7Z7M0 2845 aa7.83□□□□□ -1.16
TCOF1-201ENST00000323668 SEC61BP60468 96 aaKnown RBP7.82□□□□□ -1.16
TCOF1-201ENST00000323668 LUZP6Q538Z0 58 aa7.79□□□□□ -1.16
TCOF1-201ENST00000323668 AKAP9Q99996 3911 aa7.78□□□□□ -1.16
TCOF1-201ENST00000323668 KRTAP21-3Q3LHN1 58 aa7.72□□□□□ -1.17
TCOF1-201ENST00000323668 XP32Q5T750 250 aa7.69□□□□□ -1.18
TCOF1-201ENST00000323668 COL7A1Q02388 2944 aa7.68□□□□□ -1.18
TCOF1-201ENST00000323668 HUWE1Q7Z6Z7 4374 aaKnown RBP7.6□□□□□ -1.19
TCOF1-201ENST00000323668 KRTAP3-1Q9BYR8 98 aa7.58□□□□□ -1.2
TCOF1-201ENST00000323668 C10orf95Q9H7T3 257 aa7.56□□□□□ -1.2
TCOF1-201ENST00000323668 CSMD3Q7Z407 3707 aa7.56□□□□□ -1.2
TCOF1-201ENST00000323668 P0C880 135 aa7.55□□□□□ -1.2
TCOF1-201ENST00000323668 NDUFAF8A1L188 74 aa7.54□□□□□ -1.2
TCOF1-201ENST00000323668 A0A1B0GVY2 172 aa7.52□□□□□ -1.21
TCOF1-201ENST00000323668 M0R2T5 61 aa7.51□□□□□ -1.21
TCOF1-201ENST00000323668 KRTAP10-8P60410 259 aa7.51□□□□□ -1.21
TCOF1-201ENST00000323668 A0A0A0MQY5 61 aa7.43□□□□□ -1.22
TCOF1-201ENST00000323668 TPRXLQ17RH7 258 aa7.43□□□□□ -1.22
TCOF1-201ENST00000323668 KRTAP10-6P60371 365 aaPredicted RBP7.32□□□□□ -1.24
TCOF1-201ENST00000323668 PLAC4Q8WY50 150 aa7.31□□□□□ -1.24
TCOF1-201ENST00000323668 KRTAP12-2P59991 146 aa7.31□□□□□ -1.24
TCOF1-201ENST00000323668 DNAH9Q9NYC9 4486 aa7.31□□□□□ -1.24
TCOF1-201ENST00000323668 KRTAP13-4Q3LI77 160 aa7.28□□□□□ -1.24
TCOF1-201ENST00000323668 DNAH10Q8IVF4 4471 aa7.27□□□□□ -1.25
TCOF1-201ENST00000323668 KRTAP12-1P59990 96 aa7.25□□□□□ -1.25
TCOF1-201ENST00000323668 PLECQ15149 4684 aaKnown RBP7.24□□□□□ -1.25
TCOF1-201ENST00000323668 TNP1P09430 55 aa7.24□□□□□ -1.25
TCOF1-201ENST00000323668 PP632Q6XCG6 107 aa7.24□□□□□ -1.25
TCOF1-201ENST00000323668 DNAH1Q9P2D7 4330 aa7.19□□□□□ -1.26
TCOF1-201ENST00000323668 KRTAP10-4P60372 401 aaPredicted RBP7.19□□□□□ -1.26
TCOF1-201ENST00000323668 KRTAP3-3Q9BYR6 98 aa7.17□□□□□ -1.26
TCOF1-201ENST00000323668 KRTAP3-2Q9BYR7 98 aa7.15□□□□□ -1.27
TCOF1-201ENST00000323668 DNAH11Q96DT5 4516 aa7.1□□□□□ -1.27
TCOF1-201ENST00000323668 VPS13DQ5THJ4 4388 aa7.07□□□□□ -1.28
TCOF1-201ENST00000323668 DNAH17Q9UFH2 4485 aa7.03□□□□□ -1.28
TCOF1-201ENST00000323668 MT1HL1P0DM35 61 aa7.02□□□□□ -1.29
TCOF1-201ENST00000323668 STARD9Q9P2P6 4700 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms