RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 BAHCC1Q9P281 2608 aa2.43□□□□□ -2.02
USH2A-201ENST00000307340 PANO1I0J062 215 aa2.42□□□□□ -2.02
USH2A-201ENST00000307340 R4GN34 69 aa2.42□□□□□ -2.02
USH2A-201ENST00000307340 A0A1W2PNN7 141 aa2.42□□□□□ -2.02
USH2A-201ENST00000307340 KRTAP26-1Q6PEX3 210 aa2.42□□□□□ -2.02
USH2A-201ENST00000307340 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.42□□□□□ -2.02
USH2A-201ENST00000307340 Q5W150 140 aa2.4□□□□□ -2.02
USH2A-201ENST00000307340 MYO15AQ9UKN7 3530 aa2.4□□□□□ -2.03
USH2A-201ENST00000307340 PDZD2O15018 2839 aa2.4□□□□□ -2.03
USH2A-201ENST00000307340 HIVEP1P15822 2718 aa2.4□□□□□ -2.03
USH2A-201ENST00000307340 SPINK7P58062 85 aa2.4□□□□□ -2.03
USH2A-201ENST00000307340 C9orf92A6NGG3 77 aa2.39□□□□□ -2.03
USH2A-201ENST00000307340 PKD1L1Q8TDX9 2849 aa2.39□□□□□ -2.03
USH2A-201ENST00000307340 DCHS1Q96JQ0 3298 aa2.39□□□□□ -2.03
USH2A-201ENST00000307340 H1FX-AS1Q4G0G2 97 aa2.38□□□□□ -2.03
USH2A-201ENST00000307340 MUC3AQ02505 3323 aa2.37□□□□□ -2.03
USH2A-201ENST00000307340 KRTAP13-1Q8IUC0 172 aa2.37□□□□□ -2.03
USH2A-201ENST00000307340 TGP01266 2768 aa2.37□□□□□ -2.03
USH2A-201ENST00000307340 KRTAP10-3P60369 221 aa2.36□□□□□ -2.03
USH2A-201ENST00000307340 LAMA5O15230 3695 aa2.35□□□□□ -2.03
USH2A-201ENST00000307340 A8MUU9 505 aa2.35□□□□□ -2.03
USH2A-201ENST00000307340 C20orf166-AS1Q96NR2 134 aa2.35□□□□□ -2.03
USH2A-201ENST00000307340 PRAC1Q96KF2 57 aa2.34□□□□□ -2.03
USH2A-201ENST00000307340 ADM2Q7Z4H4 148 aa2.34□□□□□ -2.03
USH2A-201ENST00000307340 TNP1P09430 55 aa2.34□□□□□ -2.04
USH2A-201ENST00000307340 Q6ZRN7 208 aaPredicted RBP2.34□□□□□ -2.04
USH2A-201ENST00000307340 TENM1Q9UKZ4 2725 aa2.33□□□□□ -2.04
USH2A-201ENST00000307340 BSNQ9UPA5 3926 aa2.33□□□□□ -2.04
USH2A-201ENST00000307340 KRTAP25-1Q3LHN0 102 aa2.32□□□□□ -2.04
USH2A-201ENST00000307340 A6NN06 94 aa2.32□□□□□ -2.04
USH2A-201ENST00000307340 TPRXLQ17RH7 258 aa2.32□□□□□ -2.04
USH2A-201ENST00000307340 TENM2Q9NT68 2774 aa2.32□□□□□ -2.04
USH2A-201ENST00000307340 H0YAA0 97 aa2.31□□□□□ -2.04
USH2A-201ENST00000307340 PLAC4Q8WY50 150 aa2.31□□□□□ -2.04
USH2A-201ENST00000307340 ASPMQ8IZT6 3477 aa2.31□□□□□ -2.04
USH2A-201ENST00000307340 FBN1P35555 2871 aaKnown RBP2.3□□□□□ -2.04
USH2A-201ENST00000307340 KRTAP23-1A1A580 65 aa2.29□□□□□ -2.04
USH2A-201ENST00000307340 TENM3Q9P273 2699 aa2.29□□□□□ -2.04
USH2A-201ENST00000307340 Q8N1X5 172 aa2.29□□□□□ -2.04
USH2A-201ENST00000307340 ZFHX4Q86UP3 3567 aa2.29□□□□□ -2.04
USH2A-201ENST00000307340 TENM4Q6N022 2769 aa2.28□□□□□ -2.04
USH2A-201ENST00000307340 Q8NDZ9 215 aa2.28□□□□□ -2.05
USH2A-201ENST00000307340 Q5VSD8 79 aa2.28□□□□□ -2.05
USH2A-201ENST00000307340 PRO2289Q9P1D8 64 aa2.27□□□□□ -2.05
USH2A-201ENST00000307340 DMDP11532 3685 aa2.27□□□□□ -2.05
USH2A-201ENST00000307340 NBPF19A0A087WUL8 3843 aa2.26□□□□□ -2.05
USH2A-201ENST00000307340 A0A0G2JQZ4 141 aa2.26□□□□□ -2.05
USH2A-201ENST00000307340 SPENQ96T58 3664 aaKnown RBP2.25□□□□□ -2.05
USH2A-201ENST00000307340 CYSTM1Q9H1C7 97 aa2.25□□□□□ -2.05
USH2A-201ENST00000307340 RELNP78509 3460 aa2.25□□□□□ -2.05
USH2A-201ENST00000307340 KRTAP1-5Q9BYS1 174 aa2.24□□□□□ -2.05
USH2A-201ENST00000307340 M0R2T5 61 aa2.24□□□□□ -2.05
USH2A-201ENST00000307340 KRTAP11-1Q8IUC1 163 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 A0A0D9SG42 100 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 AKAP9Q99996 3911 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 VPS13CQ709C8 3753 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 COL7A1Q02388 2944 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 SMG1Q96Q15 3661 aaKnown RBP2.22□□□□□ -2.05
USH2A-201ENST00000307340 SRRM2Q9UQ35 2752 aaKnown RBP2.22□□□□□ -2.05
USH2A-201ENST00000307340 OTOGQ6ZRI0 2925 aa2.22□□□□□ -2.05
USH2A-201ENST00000307340 MEGF8Q7Z7M0 2845 aa2.19□□□□□ -2.06
USH2A-201ENST00000307340 ZFHX3Q15911 3703 aa2.19□□□□□ -2.06
USH2A-201ENST00000307340 CSMD1Q96PZ7 3565 aa2.18□□□□□ -2.06
USH2A-201ENST00000307340 INE1O15225 51 aa2.18□□□□□ -2.06
USH2A-201ENST00000307340 KRTAP10-1P60331 282 aa2.18□□□□□ -2.06
USH2A-201ENST00000307340 SMR3BP02814 79 aaPredicted RBP2.17□□□□□ -2.06
USH2A-201ENST00000307340 CSMD2Q7Z408 3487 aa2.17□□□□□ -2.06
USH2A-201ENST00000307340 KRTAP19-4Q3LI73 84 aa2.16□□□□□ -2.06
USH2A-201ENST00000307340 KRTAP7-1Q8IUC3 87 aa2.15□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP10-2P60368 255 aa2.15□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP1-4P0C5Y4 121 aa2.15□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP13-3Q3SY46 172 aa2.14□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP13-2Q52LG2 175 aa2.14□□□□□ -2.07
USH2A-201ENST00000307340 TRRAPQ9Y4A5 3859 aa2.13□□□□□ -2.07
USH2A-201ENST00000307340 XP32Q5T750 250 aa2.13□□□□□ -2.07
USH2A-201ENST00000307340 P0C880 135 aa2.12□□□□□ -2.07
USH2A-201ENST00000307340 SVEP1Q4LDE5 3571 aa2.12□□□□□ -2.07
USH2A-201ENST00000307340 C10orf95Q9H7T3 257 aa2.11□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP13-4Q3LI77 160 aa2.08□□□□□ -2.08
USH2A-201ENST00000307340 CUBNO60494 3623 aa2.07□□□□□ -2.08
USH2A-201ENST00000307340 ZNF469Q96JG9 3925 aaPredicted RBP2.05□□□□□ -2.08
USH2A-201ENST00000307340 KRTAP10-8P60410 259 aa2.05□□□□□ -2.08
USH2A-201ENST00000307340 FBN3Q75N90 2809 aa2.03□□□□□ -2.08
USH2A-201ENST00000307340 MT3P25713 68 aa2.02□□□□□ -2.09
USH2A-201ENST00000307340 A0A1B0GVY2 172 aa2□□□□□ -2.09
USH2A-201ENST00000307340 ANK2Q01484 3957 aa1.99□□□□□ -2.09
USH2A-201ENST00000307340 A8MU10 97 aa1.98□□□□□ -2.09
USH2A-201ENST00000307340 KRTAP12-1P59990 96 aa1.97□□□□□ -2.09
USH2A-201ENST00000307340 DNAH3Q8TD57 4116 aa1.96□□□□□ -2.09
USH2A-201ENST00000307340 DNAH7Q8WXX0 4024 aa1.96□□□□□ -2.1
USH2A-201ENST00000307340 HECTD4Q9Y4D8 3996 aa1.95□□□□□ -2.1
USH2A-201ENST00000307340 CMYA5Q8N3K9 4069 aa1.94□□□□□ -2.1
USH2A-201ENST00000307340 LYSTQ99698 3801 aa1.93□□□□□ -2.1
USH2A-201ENST00000307340 VPS13BQ7Z7G8 4022 aa1.91□□□□□ -2.1
USH2A-201ENST00000307340 KRTAP10-10P60014 251 aa1.9□□□□□ -2.11
USH2A-201ENST00000307340 ALMS1Q8TCU4 4167 aa1.89□□□□□ -2.11
USH2A-201ENST00000307340 KRTAP10-6P60371 365 aaPredicted RBP1.89□□□□□ -2.11
USH2A-201ENST00000307340 KRTAP12-2P59991 146 aa1.89□□□□□ -2.11
USH2A-201ENST00000307340 FRAS1Q86XX4 4008 aa1.88□□□□□ -2.11
USH2A-201ENST00000307340 CSMD3Q7Z407 3707 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms