RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 NBEAL2Q6ZNJ1 2754 aa5.88□□□□□ -1.47
CLIP1-201ENST00000302528 RPS29P62273 56 aaKnown RBP5.87□□□□□ -1.47
CLIP1-201ENST00000302528 COL12A1Q99715 3063 aa5.87□□□□□ -1.47
CLIP1-201ENST00000302528 IGSF10Q6WRI0 2623 aa5.86□□□□□ -1.47
CLIP1-201ENST00000302528 HRNRQ86YZ3 2850 aaPredicted RBP5.84□□□□□ -1.47
CLIP1-201ENST00000302528 ITPR1Q14643 2758 aa5.82□□□□□ -1.48
CLIP1-201ENST00000302528 FLNCQ14315 2725 aa5.82□□□□□ -1.48
CLIP1-201ENST00000302528 UNC79Q9P2D8 2635 aa5.82□□□□□ -1.48
CLIP1-201ENST00000302528 HELZ2Q9BYK8 2649 aaKnown RBP5.81□□□□□ -1.48
CLIP1-201ENST00000302528 SETXQ7Z333 2677 aaKnown RBP5.8□□□□□ -1.48
CLIP1-201ENST00000302528 KRTAP11-1Q8IUC1 163 aa5.79□□□□□ -1.48
CLIP1-201ENST00000302528 KRTAP10-8P60410 259 aa5.78□□□□□ -1.48
CLIP1-201ENST00000302528 PP632Q6XCG6 107 aa5.77□□□□□ -1.49
CLIP1-201ENST00000302528 ZFHX4Q86UP3 3567 aa5.76□□□□□ -1.49
CLIP1-201ENST00000302528 DCHS1Q96JQ0 3298 aa5.75□□□□□ -1.49
CLIP1-201ENST00000302528 UTP20O75691 2785 aaKnown RBP5.75□□□□□ -1.49
CLIP1-201ENST00000302528 KRTAP21-3Q3LHN1 58 aa5.74□□□□□ -1.49
CLIP1-201ENST00000302528 ZANQ9Y493 2812 aa5.73□□□□□ -1.49
CLIP1-201ENST00000302528 KRTAP13-2Q52LG2 175 aa5.73□□□□□ -1.49
CLIP1-201ENST00000302528 DMDP11532 3685 aa5.72□□□□□ -1.49
CLIP1-201ENST00000302528 ASPMQ8IZT6 3477 aa5.72□□□□□ -1.49
CLIP1-201ENST00000302528 Q6ZRN7 208 aaPredicted RBP5.72□□□□□ -1.49
CLIP1-201ENST00000302528 ASH1LQ9NR48 2969 aaKnown RBP5.71□□□□□ -1.5
CLIP1-201ENST00000302528 UBR5O95071 2799 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-201ENST00000302528 TEP1Q99973 2627 aaKnown RBP5.68□□□□□ -1.5
CLIP1-201ENST00000302528 NOTCH1P46531 2555 aa5.68□□□□□ -1.5
CLIP1-201ENST00000302528 RELNP78509 3460 aa5.67□□□□□ -1.5
CLIP1-201ENST00000302528 LAMA5O15230 3695 aa5.66□□□□□ -1.5
CLIP1-201ENST00000302528 SMG1Q96Q15 3661 aaKnown RBP5.66□□□□□ -1.5
CLIP1-201ENST00000302528 A0A1B0GVY2 172 aa5.64□□□□□ -1.51
CLIP1-201ENST00000302528 CSMD1Q96PZ7 3565 aa5.64□□□□□ -1.51
CLIP1-201ENST00000302528 KRTAP7-1Q8IUC3 87 aa5.64□□□□□ -1.51
CLIP1-201ENST00000302528 P0C880 135 aa5.63□□□□□ -1.51
CLIP1-201ENST00000302528 MUC3AQ02505 3323 aa5.63□□□□□ -1.51
CLIP1-201ENST00000302528 DCHS2Q6V1P9 2916 aa5.63□□□□□ -1.51
CLIP1-201ENST00000302528 FBN2P35556 2912 aa5.61□□□□□ -1.51
CLIP1-201ENST00000302528 APCP25054 2843 aa5.61□□□□□ -1.51
CLIP1-201ENST00000302528 KRTAP13-1Q8IUC0 172 aa5.6□□□□□ -1.51
CLIP1-201ENST00000302528 BAHCC1Q9P281 2608 aa5.59□□□□□ -1.51
CLIP1-201ENST00000302528 CRYBG3Q68DQ2 2970 aa5.58□□□□□ -1.52
CLIP1-201ENST00000302528 PRO2289Q9P1D8 64 aa5.57□□□□□ -1.52
CLIP1-201ENST00000302528 NF1P21359 2839 aa5.57□□□□□ -1.52
CLIP1-201ENST00000302528 COL6A5A8TX70 2615 aa5.56□□□□□ -1.52
CLIP1-201ENST00000302528 CELSR2Q9HCU4 2923 aa5.56□□□□□ -1.52
CLIP1-201ENST00000302528 MXRA5Q9NR99 2828 aa5.55□□□□□ -1.52
CLIP1-201ENST00000302528 ITPR2Q14571 2701 aa5.55□□□□□ -1.52
CLIP1-201ENST00000302528 KRTAP10-10P60014 251 aa5.54□□□□□ -1.52
CLIP1-201ENST00000302528 NIPBLQ6KC79 2804 aaeCLIP5.5□□□□□ -1.531e-6■□□□□ 9
CLIP1-201ENST00000302528 HIVEP1P15822 2718 aa5.5□□□□□ -1.53
CLIP1-201ENST00000302528 XP32Q5T750 250 aa5.5□□□□□ -1.53
CLIP1-201ENST00000302528 NSD1Q96L73 2696 aaPredicted RBP5.5□□□□□ -1.53
CLIP1-201ENST00000302528 H0YAA0 97 aa5.48□□□□□ -1.53
CLIP1-201ENST00000302528 CELSR1Q9NYQ6 3014 aa5.47□□□□□ -1.53
CLIP1-201ENST00000302528 SVEP1Q4LDE5 3571 aa5.47□□□□□ -1.53
CLIP1-201ENST00000302528 KMT2BQ9UMN6 2715 aaPredicted RBP5.46□□□□□ -1.53
CLIP1-201ENST00000302528 SPENQ96T58 3664 aaKnown RBP5.37□□□□□ -1.55
CLIP1-201ENST00000302528 TPRXLQ17RH7 258 aa5.37□□□□□ -1.55
CLIP1-201ENST00000302528 BSNQ9UPA5 3926 aa5.37□□□□□ -1.55
CLIP1-201ENST00000302528 KRTAP1-4P0C5Y4 121 aa5.33□□□□□ -1.56
CLIP1-201ENST00000302528 TENM3Q9P273 2699 aa5.27□□□□□ -1.57
CLIP1-201ENST00000302528 KRTAP12-2P59991 146 aa5.26□□□□□ -1.57
CLIP1-201ENST00000302528 CUBNO60494 3623 aa5.24□□□□□ -1.57
CLIP1-201ENST00000302528 KRTAP13-3Q3SY46 172 aa5.23□□□□□ -1.57
CLIP1-201ENST00000302528 PDZD2O15018 2839 aa5.22□□□□□ -1.57
CLIP1-201ENST00000302528 TENM1Q9UKZ4 2725 aa5.2□□□□□ -1.58
CLIP1-201ENST00000302528 VWFP04275 2813 aa5.2□□□□□ -1.58
CLIP1-201ENST00000302528 KRTAP13-4Q3LI77 160 aa5.16□□□□□ -1.58
CLIP1-201ENST00000302528 CSMD2Q7Z408 3487 aa5.15□□□□□ -1.58
CLIP1-201ENST00000302528 NBPF19A0A087WUL8 3843 aa5.15□□□□□ -1.59
CLIP1-201ENST00000302528 KRTAP15-1Q3LI76 137 aa5.14□□□□□ -1.59
CLIP1-201ENST00000302528 TENM4Q6N022 2769 aa5.13□□□□□ -1.59
CLIP1-201ENST00000302528 ANK3Q12955 4377 aaKnown RBP5.13□□□□□ -1.59
CLIP1-201ENST00000302528 PKD1L1Q8TDX9 2849 aa5.06□□□□□ -1.6
CLIP1-201ENST00000302528 VPS13CQ709C8 3753 aa5.06□□□□□ -1.6
CLIP1-201ENST00000302528 OTOGQ6ZRI0 2925 aa5.05□□□□□ -1.6
CLIP1-201ENST00000302528 ZFHX3Q15911 3703 aa5.05□□□□□ -1.6
CLIP1-201ENST00000302528 KRTAP12-1P59990 96 aa5.03□□□□□ -1.6
CLIP1-201ENST00000302528 FBN1P35555 2871 aaKnown RBP5.02□□□□□ -1.61
CLIP1-201ENST00000302528 TGP01266 2768 aa5□□□□□ -1.61
CLIP1-201ENST00000302528 TRRAPQ9Y4A5 3859 aa4.99□□□□□ -1.61
CLIP1-201ENST00000302528 CRCT1Q9UGL9 99 aa4.94□□□□□ -1.62
CLIP1-201ENST00000302528 INE1O15225 51 aa4.93□□□□□ -1.62
CLIP1-201ENST00000302528 SRRM2Q9UQ35 2752 aaKnown RBP4.9□□□□□ -1.63
CLIP1-201ENST00000302528 AKAP9Q99996 3911 aa4.88□□□□□ -1.63
CLIP1-201ENST00000302528 ZNF469Q96JG9 3925 aaPredicted RBP4.88□□□□□ -1.63
CLIP1-201ENST00000302528 TENM2Q9NT68 2774 aa4.87□□□□□ -1.63
CLIP1-201ENST00000302528 FBN3Q75N90 2809 aa4.8□□□□□ -1.64
CLIP1-201ENST00000302528 KRTAP3-1Q9BYR8 98 aa4.79□□□□□ -1.64
CLIP1-201ENST00000302528 HUWE1Q7Z6Z7 4374 aaKnown RBP4.79□□□□□ -1.64
CLIP1-201ENST00000302528 KRTAP10-12P60413 245 aa4.76□□□□□ -1.65
CLIP1-201ENST00000302528 MEGF8Q7Z7M0 2845 aa4.73□□□□□ -1.65
CLIP1-201ENST00000302528 KRTAP10-6P60371 365 aaPredicted RBP4.71□□□□□ -1.65
CLIP1-201ENST00000302528 CSMD3Q7Z407 3707 aa4.65□□□□□ -1.67
CLIP1-201ENST00000302528 COL7A1Q02388 2944 aa4.62□□□□□ -1.67
CLIP1-201ENST00000302528 KRTAP12-3P60328 96 aa4.62□□□□□ -1.67
CLIP1-201ENST00000302528 KRTAP10-5P60370 271 aa4.57□□□□□ -1.68
CLIP1-201ENST00000302528 DNAH9Q9NYC9 4486 aa4.57□□□□□ -1.68
CLIP1-201ENST00000302528 DNAH10Q8IVF4 4471 aa4.56□□□□□ -1.68
CLIP1-201ENST00000302528 DNAH1Q9P2D7 4330 aa4.52□□□□□ -1.69
CLIP1-201ENST00000302528 PLECQ15149 4684 aaKnown RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms