RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 A0A1W2PNM2 257 aa3.71□□□□□ -1.82
DEPDC4-201ENST00000299185 JMJD7-PLA2G4BH0Y9G9 81 aa3.71□□□□□ -1.82
DEPDC4-201ENST00000299185 VPS25Q9BRG1 176 aa3.71□□□□□ -1.82
DEPDC4-201ENST00000299185 RBM3P98179 157 aaKnown RBP3.69□□□□□ -1.82
DEPDC4-201ENST00000299185 KRTAP5-1Q6L8H4 278 aa3.69□□□□□ -1.82
DEPDC4-201ENST00000299185 SSBP3-AS1Q7Z2R9 100 aa3.69□□□□□ -1.82
DEPDC4-201ENST00000299185 TRBV7-4A0A0J9YYF1 115 aa3.68□□□□□ -1.82
DEPDC4-201ENST00000299185 TRBV7-7A0A0K0K1E9 115 aa3.68□□□□□ -1.82
DEPDC4-201ENST00000299185 J3QR89 54 aa3.68□□□□□ -1.82
DEPDC4-201ENST00000299185 PDE6GP18545 87 aa3.68□□□□□ -1.82
DEPDC4-201ENST00000299185 Q6JHZ5 121 aa3.68□□□□□ -1.82
DEPDC4-201ENST00000299185 A0A087WSZ3 146 aa3.67□□□□□ -1.82
DEPDC4-201ENST00000299185 LOC110117498A0A087WWA1 95 aa3.67□□□□□ -1.82
DEPDC4-201ENST00000299185 K7ERU9 68 aa3.67□□□□□ -1.82
DEPDC4-201ENST00000299185 DSCR8Q96T75 97 aa3.67□□□□□ -1.82
DEPDC4-201ENST00000299185 CCKP06307 115 aa3.66□□□□□ -1.82
DEPDC4-201ENST00000299185 Q6ZQT0 140 aa3.66□□□□□ -1.82
DEPDC4-201ENST00000299185 MUC2Q02817 5179 aa3.66□□□□□ -1.82
DEPDC4-201ENST00000299185 PRR4Q16378 134 aa3.65□□□□□ -1.83
DEPDC4-201ENST00000299185 FAM240AA0A1B0GVK7 77 aa3.64□□□□□ -1.83
DEPDC4-201ENST00000299185 A0A1B0GW54 56 aa3.64□□□□□ -1.83
DEPDC4-201ENST00000299185 SPINK1P00995 79 aa3.64□□□□□ -1.83
DEPDC4-201ENST00000299185 ACYP1P07311 99 aa3.64□□□□□ -1.83
DEPDC4-201ENST00000299185 CD164Q04900 197 aa3.64□□□□□ -1.83
DEPDC4-201ENST00000299185 DEFB116Q30KQ4 102 aa3.64□□□□□ -1.83
DEPDC4-201ENST00000299185 C1orf195Q5TG92 126 aa3.63□□□□□ -1.83
DEPDC4-201ENST00000299185 SPAG11AQ6PDA7 123 aa3.63□□□□□ -1.83
DEPDC4-201ENST00000299185 Q96NJ1 140 aa3.63□□□□□ -1.83
DEPDC4-201ENST00000299185 Q6Q795 121 aa3.62□□□□□ -1.83
DEPDC4-201ENST00000299185 SIGMAR1Q99720 223 aa3.62□□□□□ -1.83
DEPDC4-201ENST00000299185 LIMD2Q9BT23 127 aa3.62□□□□□ -1.83
DEPDC4-201ENST00000299185 FAT4Q6V0I7 4981 aa3.62□□□□□ -1.83
DEPDC4-201ENST00000299185 IGLV7-46A0A075B6I9 117 aa3.61□□□□□ -1.83
DEPDC4-201ENST00000299185 C9orf92A6NGG3 77 aa3.61□□□□□ -1.83
DEPDC4-201ENST00000299185 RPS29P62273 56 aaKnown RBP3.6□□□□□ -1.83
DEPDC4-201ENST00000299185 KRTAP5-4Q6L8H1 288 aa3.6□□□□□ -1.83
DEPDC4-201ENST00000299185 SVIPQ8NHG7 77 aa3.6□□□□□ -1.83
DEPDC4-201ENST00000299185 KRTAP5-9P26371 169 aa3.59□□□□□ -1.83
DEPDC4-201ENST00000299185 MPLKIPQ8TAP9 179 aa3.59□□□□□ -1.83
DEPDC4-201ENST00000299185 LINC00846Q9NV44 126 aa3.59□□□□□ -1.83
DEPDC4-201ENST00000299185 FSIP2Q5CZC0 6907 aa3.58□□□□□ -1.84
DEPDC4-201ENST00000299185 DSCR10P59022 87 aa3.58□□□□□ -1.84
DEPDC4-201ENST00000299185 Q5XG85 94 aa3.58□□□□□ -1.84
DEPDC4-201ENST00000299185 LINC00472Q9H8W2 130 aa3.58□□□□□ -1.84
DEPDC4-201ENST00000299185 SS18L2Q9UHA2 77 aa3.58□□□□□ -1.84
DEPDC4-201ENST00000299185 LRP2P98164 4655 aa3.58□□□□□ -1.84
DEPDC4-201ENST00000299185 IGKV2D-30A0A075B6S6 120 aa3.57□□□□□ -1.84
DEPDC4-201ENST00000299185 IGKV4-1P06312 121 aa3.57□□□□□ -1.84
DEPDC4-201ENST00000299185 KRTAP13-3Q3SY46 172 aa3.57□□□□□ -1.84
DEPDC4-201ENST00000299185 ASB16-AS1Q495Z4 193 aa3.57□□□□□ -1.84
DEPDC4-201ENST00000299185 Q6ZVQ6 151 aa3.57□□□□□ -1.84
DEPDC4-201ENST00000299185 NOTCH2NLQ7Z3S9 236 aa3.57□□□□□ -1.84
DEPDC4-201ENST00000299185 Q8N9L7 120 aa3.57□□□□□ -1.84
DEPDC4-201ENST00000299185 UBL5Q9BZL1 73 aa3.57□□□□□ -1.84
DEPDC4-201ENST00000299185 LPAP08519 4548 aa3.56□□□□□ -1.84
DEPDC4-201ENST00000299185 NREPQ16612 68 aa3.56□□□□□ -1.84
DEPDC4-201ENST00000299185 FP248Q71RG6 208 aaPredicted RBP3.56□□□□□ -1.84
DEPDC4-201ENST00000299185 LINC00643Q86TS7 51 aa3.56□□□□□ -1.84
DEPDC4-201ENST00000299185 CRCT1Q9UGL9 99 aa3.56□□□□□ -1.84
DEPDC4-201ENST00000299185 BPY2O14599 106 aa3.55□□□□□ -1.84
DEPDC4-201ENST00000299185 IGHV6-1A0A0B4J1U7 121 aa3.54□□□□□ -1.84
DEPDC4-201ENST00000299185 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
DEPDC4-201ENST00000299185 IGKV3D-7A0A0C4DH55 119 aa3.53□□□□□ -1.84
DEPDC4-201ENST00000299185 K7EQZ3 153 aa3.53□□□□□ -1.84
DEPDC4-201ENST00000299185 TPRXLQ17RH7 258 aa3.53□□□□□ -1.84
DEPDC4-201ENST00000299185 ATP5EP2Q5VTU8 51 aa3.53□□□□□ -1.84
DEPDC4-201ENST00000299185 A0A0U1RQV1 116 aa3.52□□□□□ -1.85
DEPDC4-201ENST00000299185 MT-ATP8P03928 68 aa3.52□□□□□ -1.85
DEPDC4-201ENST00000299185 CXCL6P80162 114 aa3.52□□□□□ -1.85
DEPDC4-201ENST00000299185 A0A1B0GVX0 72 aa3.51□□□□□ -1.85
DEPDC4-201ENST00000299185 KRTAP16-1A8MUX0 517 aa3.51□□□□□ -1.85
DEPDC4-201ENST00000299185 A8MWP4 228 aa3.51□□□□□ -1.85
DEPDC4-201ENST00000299185 J3KT08 172 aa3.51□□□□□ -1.85
DEPDC4-201ENST00000299185 PCP4P48539 62 aa3.51□□□□□ -1.85
DEPDC4-201ENST00000299185 IMUPQ9GZP8 106 aa3.51□□□□□ -1.85
DEPDC4-201ENST00000299185 MMP24-AS1A0A0U1RRL7 71 aa3.5□□□□□ -1.85
DEPDC4-201ENST00000299185 MT3P25713 68 aa3.5□□□□□ -1.85
DEPDC4-201ENST00000299185 WFDC13Q8IUB5 93 aa3.5□□□□□ -1.85
DEPDC4-201ENST00000299185 C8orf17Q9NRJ1 99 aa3.5□□□□□ -1.85
DEPDC4-201ENST00000299185 MUC17Q685J3 4493 aa3.5□□□□□ -1.85
DEPDC4-201ENST00000299185 PCOTHQ58A44 107 aa3.48□□□□□ -1.85
DEPDC4-201ENST00000299185 PRR15Q8IV56 129 aa3.48□□□□□ -1.85
DEPDC4-201ENST00000299185 KRTAP4-1Q9BYQ7 146 aa3.48□□□□□ -1.85
DEPDC4-201ENST00000299185 A0A087WVE0 104 aa3.47□□□□□ -1.85
DEPDC4-201ENST00000299185 NDUFB1O75438 58 aa3.47□□□□□ -1.85
DEPDC4-201ENST00000299185 RPL37P61927 97 aaKnown RBP3.47□□□□□ -1.85
DEPDC4-201ENST00000299185 LINC00313P59037 77 aa3.46□□□□□ -1.86
DEPDC4-201ENST00000299185 HIST1H4AP62805 103 aaKnown RBP3.46□□□□□ -1.86
DEPDC4-201ENST00000299185 C8orf87E5RJ46 101 aa3.45□□□□□ -1.86
DEPDC4-201ENST00000299185 A8MUU9 505 aa3.44□□□□□ -1.86
DEPDC4-201ENST00000299185 SCGB1A1P11684 91 aa3.44□□□□□ -1.86
DEPDC4-201ENST00000299185 C20orf166-AS1Q96NR2 134 aa3.44□□□□□ -1.86
DEPDC4-201ENST00000299185 HCG22E2RYF7 251 aa3.43□□□□□ -1.86
DEPDC4-201ENST00000299185 CASC2Q6XLA1 102 aa3.43□□□□□ -1.86
DEPDC4-201ENST00000299185 Q75L30 129 aa3.43□□□□□ -1.86
DEPDC4-201ENST00000299185 hDV103S1A0JD37 113 aa3.42□□□□□ -1.86
DEPDC4-201ENST00000299185 NDUFS5O43920 106 aa3.42□□□□□ -1.86
DEPDC4-201ENST00000299185 TMEM254Q8TBM7 123 aa3.42□□□□□ -1.86
DEPDC4-201ENST00000299185 MRPL34Q9BQ48 92 aaKnown RBP3.42□□□□□ -1.86
DEPDC4-201ENST00000299185 A0A0A0MQY5 61 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms