RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 FRYQ5TBA9 3013 aa6.78□□□□□ -1.32
PCF11-201ENST00000298281 PRO2289Q9P1D8 64 aa6.78□□□□□ -1.32
PCF11-201ENST00000298281 SPEGQ15772 3267 aa6.75□□□□□ -1.33
PCF11-201ENST00000298281 Q6ZRN7 208 aaPredicted RBP6.72□□□□□ -1.33
PCF11-201ENST00000298281 PP632Q6XCG6 107 aa6.69□□□□□ -1.34
PCF11-201ENST00000298281 DSPP15924 2871 aaKnown RBP6.69□□□□□ -1.34
PCF11-201ENST00000298281 KRTAP10-10P60014 251 aa6.69□□□□□ -1.34
PCF11-201ENST00000298281 A6NN06 94 aa6.68□□□□□ -1.34
PCF11-201ENST00000298281 ASH1LQ9NR48 2969 aaKnown RBP6.68□□□□□ -1.34
PCF11-201ENST00000298281 FRYLO94915 3013 aa6.66□□□□□ -1.34
PCF11-201ENST00000298281 MYO15AQ9UKN7 3530 aa6.66□□□□□ -1.34
PCF11-201ENST00000298281 KRTAP13-1Q8IUC0 172 aa6.65□□□□□ -1.34
PCF11-201ENST00000298281 ITPR1Q14643 2758 aa6.65□□□□□ -1.34
PCF11-201ENST00000298281 KRTAP11-1Q8IUC1 163 aa6.64□□□□□ -1.35
PCF11-201ENST00000298281 KRTAP13-2Q52LG2 175 aa6.63□□□□□ -1.35
PCF11-201ENST00000298281 UTP20O75691 2785 aaKnown RBP6.62□□□□□ -1.35
PCF11-201ENST00000298281 ASPMQ8IZT6 3477 aa6.59□□□□□ -1.35
PCF11-201ENST00000298281 KRTAP21-3Q3LHN1 58 aa6.58□□□□□ -1.36
PCF11-201ENST00000298281 KRTAP7-1Q8IUC3 87 aa6.57□□□□□ -1.36
PCF11-201ENST00000298281 HIVEP1P15822 2718 aa6.57□□□□□ -1.36
PCF11-201ENST00000298281 NBPF19A0A087WUL8 3843 aa6.56□□□□□ -1.36
PCF11-201ENST00000298281 DMXL1Q9Y485 3027 aa6.56□□□□□ -1.36
PCF11-201ENST00000298281 COL12A1Q99715 3063 aa6.55□□□□□ -1.36
PCF11-201ENST00000298281 DMXL2Q8TDJ6 3036 aa6.54□□□□□ -1.36
PCF11-201ENST00000298281 WDFY3Q8IZQ1 3526 aa6.54□□□□□ -1.36
PCF11-201ENST00000298281 BOD1L1Q8NFC6 3051 aa6.54□□□□□ -1.36
PCF11-201ENST00000298281 FLNCQ14315 2725 aa6.52□□□□□ -1.37
PCF11-201ENST00000298281 LRBAP50851 2863 aa6.49□□□□□ -1.37
PCF11-201ENST00000298281 KALRNO60229 2985 aa6.49□□□□□ -1.37
PCF11-201ENST00000298281 NIPBLQ6KC79 2804 aaeCLIP6.49□□□□□ -1.376e-27■□□□□ 8.6
PCF11-201ENST00000298281 CFAP47Q6ZTR5 3102 aa6.49□□□□□ -1.37
PCF11-201ENST00000298281 TENM4Q6N022 2769 aa6.49□□□□□ -1.37
PCF11-201ENST00000298281 ATMQ13315 3056 aa6.43□□□□□ -1.38
PCF11-201ENST00000298281 TACC2O95359 2948 aa6.4□□□□□ -1.38
PCF11-201ENST00000298281 TENM3Q9P273 2699 aa6.4□□□□□ -1.38
PCF11-201ENST00000298281 DMDP11532 3685 aa6.4□□□□□ -1.38
PCF11-201ENST00000298281 LOC400499M0QZD8 3231 aa6.38□□□□□ -1.39
PCF11-201ENST00000298281 ZZEF1O43149 2961 aa6.37□□□□□ -1.39
PCF11-201ENST00000298281 CELSR2Q9HCU4 2923 aa6.36□□□□□ -1.39
PCF11-201ENST00000298281 XP32Q5T750 250 aa6.35□□□□□ -1.39
PCF11-201ENST00000298281 TENM1Q9UKZ4 2725 aa6.35□□□□□ -1.39
PCF11-201ENST00000298281 TPRXLQ17RH7 258 aa6.34□□□□□ -1.4
PCF11-201ENST00000298281 ZFHX4Q86UP3 3567 aa6.32□□□□□ -1.4
PCF11-201ENST00000298281 LAMA5O15230 3695 aa6.32□□□□□ -1.4
PCF11-201ENST00000298281 NBEAQ8NFP9 2946 aa6.31□□□□□ -1.4
PCF11-201ENST00000298281 ADGRG4Q8IZF6 3080 aa6.3□□□□□ -1.4
PCF11-201ENST00000298281 KRTAP1-4P0C5Y4 121 aa6.29□□□□□ -1.4
PCF11-201ENST00000298281 NF1P21359 2839 aa6.28□□□□□ -1.4
PCF11-201ENST00000298281 H0YAA0 97 aa6.24□□□□□ -1.41
PCF11-201ENST00000298281 DCHS2Q6V1P9 2916 aa6.24□□□□□ -1.41
PCF11-201ENST00000298281 KRTAP12-2P59991 146 aa6.24□□□□□ -1.41
PCF11-201ENST00000298281 CELSR1Q9NYQ6 3014 aa6.22□□□□□ -1.41
PCF11-201ENST00000298281 MUC3AQ02505 3323 aa6.18□□□□□ -1.42
PCF11-201ENST00000298281 RELNP78509 3460 aa6.17□□□□□ -1.42
PCF11-201ENST00000298281 DCHS1Q96JQ0 3298 aa6.16□□□□□ -1.42
PCF11-201ENST00000298281 KRTAP15-1Q3LI76 137 aa6.13□□□□□ -1.43
PCF11-201ENST00000298281 KRTAP13-3Q3SY46 172 aa6.13□□□□□ -1.43
PCF11-201ENST00000298281 PDZD2O15018 2839 aa6.12□□□□□ -1.43
PCF11-201ENST00000298281 TGP01266 2768 aa6.12□□□□□ -1.43
PCF11-201ENST00000298281 CRCT1Q9UGL9 99 aa6.12□□□□□ -1.43
PCF11-201ENST00000298281 BSNQ9UPA5 3926 aa6.07□□□□□ -1.44
PCF11-201ENST00000298281 ZANQ9Y493 2812 aa6.07□□□□□ -1.44
PCF11-201ENST00000298281 SPENQ96T58 3664 aaKnown RBP6.06□□□□□ -1.44
PCF11-201ENST00000298281 ZFHX3Q15911 3703 aa6.04□□□□□ -1.44
PCF11-201ENST00000298281 TENM2Q9NT68 2774 aa6.01□□□□□ -1.45
PCF11-201ENST00000298281 SMG1Q96Q15 3661 aaKnown RBP5.99□□□□□ -1.45
PCF11-201ENST00000298281 CSMD1Q96PZ7 3565 aa5.96□□□□□ -1.45
PCF11-201ENST00000298281 PKD1L1Q8TDX9 2849 aa5.96□□□□□ -1.46
PCF11-201ENST00000298281 KRTAP13-4Q3LI77 160 aa5.94□□□□□ -1.46
PCF11-201ENST00000298281 FBN2P35556 2912 aa5.94□□□□□ -1.46
PCF11-201ENST00000298281 HRNRQ86YZ3 2850 aaPredicted RBP5.89□□□□□ -1.47
PCF11-201ENST00000298281 VWFP04275 2813 aa5.87□□□□□ -1.47
PCF11-201ENST00000298281 MXRA5Q9NR99 2828 aa5.85□□□□□ -1.47
PCF11-201ENST00000298281 SRRM2Q9UQ35 2752 aaKnown RBP5.79□□□□□ -1.48
PCF11-201ENST00000298281 VPS13CQ709C8 3753 aa5.77□□□□□ -1.49
PCF11-201ENST00000298281 KRTAP12-1P59990 96 aa5.77□□□□□ -1.49
PCF11-201ENST00000298281 SVEP1Q4LDE5 3571 aa5.75□□□□□ -1.49
PCF11-201ENST00000298281 INE1O15225 51 aa5.73□□□□□ -1.49
PCF11-201ENST00000298281 KRTAP10-6P60371 365 aaPredicted RBP5.73□□□□□ -1.49
PCF11-201ENST00000298281 CSMD2Q7Z408 3487 aa5.72□□□□□ -1.49
PCF11-201ENST00000298281 MEGF8Q7Z7M0 2845 aa5.7□□□□□ -1.5
PCF11-201ENST00000298281 COL7A1Q02388 2944 aa5.65□□□□□ -1.5
PCF11-201ENST00000298281 KRTAP10-12P60413 245 aa5.61□□□□□ -1.51
PCF11-201ENST00000298281 TRRAPQ9Y4A5 3859 aa5.6□□□□□ -1.51
PCF11-201ENST00000298281 AKAP9Q99996 3911 aa5.6□□□□□ -1.51
PCF11-201ENST00000298281 ZNF469Q96JG9 3925 aaPredicted RBP5.6□□□□□ -1.51
PCF11-201ENST00000298281 KRTAP3-1Q9BYR8 98 aa5.58□□□□□ -1.52
PCF11-201ENST00000298281 ANK3Q12955 4377 aaKnown RBP5.56□□□□□ -1.52
PCF11-201ENST00000298281 KRTAP10-5P60370 271 aa5.54□□□□□ -1.52
PCF11-201ENST00000298281 FBN3Q75N90 2809 aa5.52□□□□□ -1.53
PCF11-201ENST00000298281 CUBNO60494 3623 aa5.52□□□□□ -1.53
PCF11-201ENST00000298281 OTOGQ6ZRI0 2925 aa5.46□□□□□ -1.54
PCF11-201ENST00000298281 FBN1P35555 2871 aaKnown RBP5.43□□□□□ -1.54
PCF11-201ENST00000298281 LORP23490 312 aaPredicted RBP5.38□□□□□ -1.55
PCF11-201ENST00000298281 KRTAP12-3P60328 96 aa5.35□□□□□ -1.55
PCF11-201ENST00000298281 KRTAP23-1A1A580 65 aa5.32□□□□□ -1.56
PCF11-201ENST00000298281 KRTAP8-1Q8IUC2 63 aa5.31□□□□□ -1.56
PCF11-201ENST00000298281 MT1HL1P0DM35 61 aa5.3□□□□□ -1.56
PCF11-201ENST00000298281 CSMD3Q7Z407 3707 aa5.27□□□□□ -1.57
PCF11-201ENST00000298281 HUWE1Q7Z6Z7 4374 aaKnown RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms