RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 LINC01554Q52M75 96 aa9.43□□□□□ -0.9
SHH-201ENST00000297261 ZCCHC13Q8WW36 166 aaKnown RBP9.43□□□□□ -0.9
SHH-201ENST00000297261 PLA2G1BP04054 148 aaKnown RBP9.43□□□□□ -0.9
SHH-201ENST00000297261 ZNF469Q96JG9 3925 aaPredicted RBP9.42□□□□□ -0.9
SHH-201ENST00000297261 FBN1P35555 2871 aaKnown RBP9.4□□□□□ -0.9
SHH-201ENST00000297261 A8MU10 97 aa9.39□□□□□ -0.91
SHH-201ENST00000297261 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.37□□□□□ -0.91
SHH-201ENST00000297261 IGLV7-43P04211 117 aa9.37□□□□□ -0.91
SHH-201ENST00000297261 KRTAP4-16G5E9R7 235 aaPredicted RBP9.36□□□□□ -0.91
SHH-201ENST00000297261 H3BS24 57 aa9.35□□□□□ -0.91
SHH-201ENST00000297261 KRTAP29-1A8MX34 341 aaPredicted RBP9.34□□□□□ -0.91
SHH-201ENST00000297261 SPRR1BP22528 89 aa9.31□□□□□ -0.92
SHH-201ENST00000297261 C9orf92A6NGG3 77 aa9.31□□□□□ -0.92
SHH-201ENST00000297261 TRRAPQ9Y4A5 3859 aa9.31□□□□□ -0.92
SHH-201ENST00000297261 CSAG1Q6PB30 78 aa9.3□□□□□ -0.92
SHH-201ENST00000297261 A0A0D9SG42 100 aa9.25□□□□□ -0.93
SHH-201ENST00000297261 LCE6AA0A183 80 aa9.24□□□□□ -0.93
SHH-201ENST00000297261 Q5W150 140 aa9.23□□□□□ -0.93
SHH-201ENST00000297261 CRIPTQ9P021 101 aa9.23□□□□□ -0.93
SHH-201ENST00000297261 PKD1L1Q8TDX9 2849 aa9.22□□□□□ -0.93
SHH-201ENST00000297261 LINC00304Q8N9R0 145 aa9.22□□□□□ -0.93
SHH-201ENST00000297261 PANO1I0J062 215 aa9.21□□□□□ -0.94
SHH-201ENST00000297261 A0A1B0GU33 70 aa9.2□□□□□ -0.94
SHH-201ENST00000297261 Q6ZR54 194 aa9.17□□□□□ -0.94
SHH-201ENST00000297261 KRTAP7-1Q8IUC3 87 aa9.17□□□□□ -0.94
SHH-201ENST00000297261 Q6ZRN7 208 aaPredicted RBP9.17□□□□□ -0.94
SHH-201ENST00000297261 PLAC8Q9NZF1 115 aa9.17□□□□□ -0.94
SHH-201ENST00000297261 A6NN06 94 aa9.16□□□□□ -0.94
SHH-201ENST00000297261 SMR3BP02814 79 aaPredicted RBP9.16□□□□□ -0.94
SHH-201ENST00000297261 A0A087X002 238 aa9.14□□□□□ -0.95
SHH-201ENST00000297261 NOTCH2NLQ7Z3S9 236 aa9.14□□□□□ -0.95
SHH-201ENST00000297261 KRTAP10-2P60368 255 aa9.11□□□□□ -0.95
SHH-201ENST00000297261 CMYA5Q8N3K9 4069 aa9.11□□□□□ -0.95
SHH-201ENST00000297261 DMAC1Q96GE9 116 aa9.1□□□□□ -0.95
SHH-201ENST00000297261 KRTAP11-1Q8IUC1 163 aa9.09□□□□□ -0.95
SHH-201ENST00000297261 ADM2Q7Z4H4 148 aa9.09□□□□□ -0.95
SHH-201ENST00000297261 KRTAP10-1P60331 282 aa9.03□□□□□ -0.96
SHH-201ENST00000297261 DNAH3Q8TD57 4116 aa9.02□□□□□ -0.97
SHH-201ENST00000297261 KRTAP21-3Q3LHN1 58 aa8.99□□□□□ -0.97
SHH-201ENST00000297261 TENM2Q9NT68 2774 aa8.98□□□□□ -0.97
SHH-201ENST00000297261 SPATA8Q6RVD6 105 aa8.98□□□□□ -0.97
SHH-201ENST00000297261 LINC00483Q53H64 154 aa8.96□□□□□ -0.98
SHH-201ENST00000297261 ASB16-AS1Q495Z4 193 aa8.9□□□□□ -0.99
SHH-201ENST00000297261 TGP01266 2768 aa8.87□□□□□ -0.99
SHH-201ENST00000297261 KRTAP13-1Q8IUC0 172 aa8.85□□□□□ -0.99
SHH-201ENST00000297261 H1FX-AS1Q4G0G2 97 aa8.81□□□□□ -1
SHH-201ENST00000297261 RPL37P61927 97 aaKnown RBP8.79□□□□□ -1
SHH-201ENST00000297261 ANK2Q01484 3957 aa8.78□□□□□ -1
SHH-201ENST00000297261 ROMO1P60602 79 aa8.77□□□□□ -1.01
SHH-201ENST00000297261 LUZP6Q538Z0 58 aa8.74□□□□□ -1.01
SHH-201ENST00000297261 KRTAP25-1Q3LHN0 102 aa8.72□□□□□ -1.01
SHH-201ENST00000297261 DNAH1Q9P2D7 4330 aa8.67□□□□□ -1.02
SHH-201ENST00000297261 HUWE1Q7Z6Z7 4374 aaKnown RBP8.66□□□□□ -1.02
SHH-201ENST00000297261 S4R3F8 94 aa8.64□□□□□ -1.03
SHH-201ENST00000297261 KRTAP13-2Q52LG2 175 aa8.63□□□□□ -1.03
SHH-201ENST00000297261 Q6ZSA8 131 aa8.63□□□□□ -1.03
SHH-201ENST00000297261 FBN3Q75N90 2809 aa8.63□□□□□ -1.03
SHH-201ENST00000297261 COX6B2Q6YFQ2 88 aa8.62□□□□□ -1.03
SHH-201ENST00000297261 Q5VSD8 79 aa8.62□□□□□ -1.03
SHH-201ENST00000297261 DYNC2H1Q8NCM8 4307 aaKnown RBP8.62□□□□□ -1.03
SHH-201ENST00000297261 CAMK2N1Q7Z7J9 78 aa8.57□□□□□ -1.04
SHH-201ENST00000297261 J3QL48 77 aa8.56□□□□□ -1.04
SHH-201ENST00000297261 SRRM2Q9UQ35 2752 aaKnown RBP8.53□□□□□ -1.04
SHH-201ENST00000297261 NDUFAF8A1L188 74 aa8.51□□□□□ -1.05
SHH-201ENST00000297261 R4GN34 69 aa8.5□□□□□ -1.05
SHH-201ENST00000297261 A8MUU9 505 aa8.5□□□□□ -1.05
SHH-201ENST00000297261 MEGF8Q7Z7M0 2845 aa8.49□□□□□ -1.05
SHH-201ENST00000297261 CSMD3Q7Z407 3707 aa8.47□□□□□ -1.05
SHH-201ENST00000297261 DNAH9Q9NYC9 4486 aa8.46□□□□□ -1.06
SHH-201ENST00000297261 KRTAP1-4P0C5Y4 121 aa8.46□□□□□ -1.06
SHH-201ENST00000297261 KRTAP16-1A8MUX0 517 aa8.43□□□□□ -1.06
SHH-201ENST00000297261 A0A0A0MQY5 61 aa8.43□□□□□ -1.06
SHH-201ENST00000297261 COL7A1Q02388 2944 aa8.41□□□□□ -1.06
SHH-201ENST00000297261 M0QZ58 72 aa8.41□□□□□ -1.06
SHH-201ENST00000297261 DNAH7Q8WXX0 4024 aa8.39□□□□□ -1.07
SHH-201ENST00000297261 H0YAA0 97 aa8.38□□□□□ -1.07
SHH-201ENST00000297261 RPS29P62273 56 aaKnown RBP8.36□□□□□ -1.07
SHH-201ENST00000297261 LYSTQ99698 3801 aa8.35□□□□□ -1.07
SHH-201ENST00000297261 PRKDCP78527 4128 aaKnown RBP8.32□□□□□ -1.08
SHH-201ENST00000297261 C10orf95Q9H7T3 257 aa8.31□□□□□ -1.08
SHH-201ENST00000297261 A0A1B0GVY2 172 aa8.3□□□□□ -1.08
SHH-201ENST00000297261 PLECQ15149 4684 aaKnown RBP8.29□□□□□ -1.08
SHH-201ENST00000297261 KRTAP13-3Q3SY46 172 aa8.25□□□□□ -1.09
SHH-201ENST00000297261 DNAH10Q8IVF4 4471 aa8.24□□□□□ -1.09
SHH-201ENST00000297261 C20orf166-AS1Q96NR2 134 aa8.19□□□□□ -1.1
SHH-201ENST00000297261 DNAH6Q9C0G6 4158 aa8.19□□□□□ -1.1
SHH-201ENST00000297261 DNHD1Q96M86 4753 aa8.18□□□□□ -1.1
SHH-201ENST00000297261 STARD9Q9P2P6 4700 aa8.13□□□□□ -1.11
SHH-201ENST00000297261 FRAS1Q86XX4 4008 aa8.09□□□□□ -1.11
SHH-201ENST00000297261 VPS13DQ5THJ4 4388 aa8.07□□□□□ -1.12
SHH-201ENST00000297261 SEC61BP60468 96 aaKnown RBP8.06□□□□□ -1.12
SHH-201ENST00000297261 M0R2T5 61 aa8.02□□□□□ -1.13
SHH-201ENST00000297261 PLAC4Q8WY50 150 aa7.99□□□□□ -1.13
SHH-201ENST00000297261 P0C880 135 aa7.98□□□□□ -1.13
SHH-201ENST00000297261 KRTAP10-8P60410 259 aa7.97□□□□□ -1.13
SHH-201ENST00000297261 DNAH11Q96DT5 4516 aa7.96□□□□□ -1.14
SHH-201ENST00000297261 ALMS1Q8TCU4 4167 aa7.95□□□□□ -1.14
SHH-201ENST00000297261 XP32Q5T750 250 aa7.93□□□□□ -1.14
SHH-201ENST00000297261 KMT2AQ03164 3969 aa7.92□□□□□ -1.14
SHH-201ENST00000297261 DNAH2Q9P225 4427 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms