RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 NF1P21359 2839 aa10.66□□□□□ -0.7
PCDH1-201ENST00000287008 M0QZ58 72 aa10.65□□□□□ -0.7
PCDH1-201ENST00000287008 TENM1Q9UKZ4 2725 aa10.65□□□□□ -0.7
PCDH1-201ENST00000287008 CFAP47Q6ZTR5 3102 aa10.64□□□□□ -0.71
PCDH1-201ENST00000287008 KRTAP7-1Q8IUC3 87 aa10.63□□□□□ -0.71
PCDH1-201ENST00000287008 SPEGQ15772 3267 aa10.63□□□□□ -0.71
PCDH1-201ENST00000287008 NOTCH2NLQ7Z3S9 236 aa10.61□□□□□ -0.71
PCDH1-201ENST00000287008 RPL37P61927 97 aaKnown RBP10.6□□□□□ -0.71
PCDH1-201ENST00000287008 KRTAP13-2Q52LG2 175 aa10.57□□□□□ -0.72
PCDH1-201ENST00000287008 Q5VV11 94 aa10.56□□□□□ -0.72
PCDH1-201ENST00000287008 TNRC18O15417 2968 aaPredicted RBP10.55□□□□□ -0.72
PCDH1-201ENST00000287008 KRTAP13-1Q8IUC0 172 aa10.54□□□□□ -0.72
PCDH1-201ENST00000287008 DMXL1Q9Y485 3027 aa10.54□□□□□ -0.72
PCDH1-201ENST00000287008 Q5XG85 94 aa10.51□□□□□ -0.73
PCDH1-201ENST00000287008 ADM2Q7Z4H4 148 aa10.51□□□□□ -0.73
PCDH1-201ENST00000287008 H1FX-AS1Q4G0G2 97 aa10.5□□□□□ -0.73
PCDH1-201ENST00000287008 PLAC4Q8WY50 150 aa10.5□□□□□ -0.73
PCDH1-201ENST00000287008 TENM2Q9NT68 2774 aa10.48□□□□□ -0.73
PCDH1-201ENST00000287008 FBN2P35556 2912 aa10.47□□□□□ -0.73
PCDH1-201ENST00000287008 PKD1L1Q8TDX9 2849 aa10.42□□□□□ -0.74
PCDH1-201ENST00000287008 MXRA5Q9NR99 2828 aa10.38□□□□□ -0.75
PCDH1-201ENST00000287008 PRAC1Q96KF2 57 aa10.37□□□□□ -0.75
PCDH1-201ENST00000287008 SPATA8Q6RVD6 105 aa10.35□□□□□ -0.75
PCDH1-201ENST00000287008 ROMO1P60602 79 aa10.35□□□□□ -0.75
PCDH1-201ENST00000287008 MYO15AQ9UKN7 3530 aa10.34□□□□□ -0.75
PCDH1-201ENST00000287008 HRNRQ86YZ3 2850 aaPredicted RBP10.32□□□□□ -0.76
PCDH1-201ENST00000287008 C20orf166-AS1Q96NR2 134 aa10.32□□□□□ -0.76
PCDH1-201ENST00000287008 SPTBN5Q9NRC6 3674 aaKnown RBP10.3□□□□□ -0.76
PCDH1-201ENST00000287008 A8MUU9 505 aa10.27□□□□□ -0.76
PCDH1-201ENST00000287008 USP34Q70CQ2 3546 aa10.22□□□□□ -0.77
PCDH1-201ENST00000287008 CELSR1Q9NYQ6 3014 aa10.16□□□□□ -0.78
PCDH1-201ENST00000287008 LOC400499M0QZD8 3231 aa10.16□□□□□ -0.78
PCDH1-201ENST00000287008 KRTAP1-4P0C5Y4 121 aa10.13□□□□□ -0.79
PCDH1-201ENST00000287008 VWFP04275 2813 aa10.13□□□□□ -0.79
PCDH1-201ENST00000287008 DCHS1Q96JQ0 3298 aa10.09□□□□□ -0.79
PCDH1-201ENST00000287008 TGP01266 2768 aa10.05□□□□□ -0.8
PCDH1-201ENST00000287008 A8MU10 97 aa10.05□□□□□ -0.8
PCDH1-201ENST00000287008 PDZD2O15018 2839 aa10.02□□□□□ -0.8
PCDH1-201ENST00000287008 XP32Q5T750 250 aa10.02□□□□□ -0.81
PCDH1-201ENST00000287008 A0A0A0MQY5 61 aa10.01□□□□□ -0.81
PCDH1-201ENST00000287008 SRRM2Q9UQ35 2752 aaKnown RBP9.99□□□□□ -0.81
PCDH1-201ENST00000287008 TPRXLQ17RH7 258 aa9.93□□□□□ -0.82
PCDH1-201ENST00000287008 WDFY3Q8IZQ1 3526 aa9.9□□□□□ -0.82
PCDH1-201ENST00000287008 TNP1P09430 55 aa9.86□□□□□ -0.83
PCDH1-201ENST00000287008 FBN1P35555 2871 aaKnown RBP9.85□□□□□ -0.83
PCDH1-201ENST00000287008 A0A1B0GVY2 172 aa9.76□□□□□ -0.85
PCDH1-201ENST00000287008 KRTAP13-3Q3SY46 172 aa9.73□□□□□ -0.85
PCDH1-201ENST00000287008 KRTAP25-1Q3LHN0 102 aa9.72□□□□□ -0.85
PCDH1-201ENST00000287008 KRTAP10-8P60410 259 aa9.7□□□□□ -0.86
PCDH1-201ENST00000287008 A6NN06 94 aa9.69□□□□□ -0.86
PCDH1-201ENST00000287008 RELNP78509 3460 aa9.68□□□□□ -0.86
PCDH1-201ENST00000287008 OTOGQ6ZRI0 2925 aa9.66□□□□□ -0.86
PCDH1-201ENST00000287008 KRTAP16-1A8MUX0 517 aa9.66□□□□□ -0.86
PCDH1-201ENST00000287008 KRTAP10-10P60014 251 aa9.66□□□□□ -0.86
PCDH1-201ENST00000287008 ASPMQ8IZT6 3477 aa9.64□□□□□ -0.87
PCDH1-201ENST00000287008 ZFHX4Q86UP3 3567 aa9.62□□□□□ -0.87
PCDH1-201ENST00000287008 DMDP11532 3685 aa9.59□□□□□ -0.87
PCDH1-201ENST00000287008 MUC3AQ02505 3323 aa9.58□□□□□ -0.88
PCDH1-201ENST00000287008 H3BS24 57 aa9.57□□□□□ -0.88
PCDH1-201ENST00000287008 PP632Q6XCG6 107 aa9.48□□□□□ -0.89
PCDH1-201ENST00000287008 ZFHX3Q15911 3703 aa9.47□□□□□ -0.89
PCDH1-201ENST00000287008 LAMA5O15230 3695 aa9.46□□□□□ -0.9
PCDH1-201ENST00000287008 PRO2289Q9P1D8 64 aa9.44□□□□□ -0.9
PCDH1-201ENST00000287008 FBN3Q75N90 2809 aa9.42□□□□□ -0.9
PCDH1-201ENST00000287008 SMG1Q96Q15 3661 aaKnown RBP9.42□□□□□ -0.9
PCDH1-201ENST00000287008 C10orf95Q9H7T3 257 aa9.4□□□□□ -0.9
PCDH1-201ENST00000287008 P0C880 135 aa9.39□□□□□ -0.91
PCDH1-201ENST00000287008 H0YAA0 97 aa9.37□□□□□ -0.91
PCDH1-201ENST00000287008 CSMD1Q96PZ7 3565 aa9.36□□□□□ -0.91
PCDH1-201ENST00000287008 COL7A1Q02388 2944 aa9.32□□□□□ -0.92
PCDH1-201ENST00000287008 NDUFAF8A1L188 74 aa9.29□□□□□ -0.92
PCDH1-201ENST00000287008 NBPF19A0A087WUL8 3843 aa9.28□□□□□ -0.92
PCDH1-201ENST00000287008 MEGF8Q7Z7M0 2845 aa9.16□□□□□ -0.94
PCDH1-201ENST00000287008 SVEP1Q4LDE5 3571 aa9.14□□□□□ -0.95
PCDH1-201ENST00000287008 SPENQ96T58 3664 aaKnown RBP9.04□□□□□ -0.96
PCDH1-201ENST00000287008 MT1HL1P0DM35 61 aa8.89□□□□□ -0.99
PCDH1-201ENST00000287008 CUBNO60494 3623 aa8.88□□□□□ -0.99
PCDH1-201ENST00000287008 CSMD2Q7Z408 3487 aa8.88□□□□□ -0.99
PCDH1-201ENST00000287008 KRTAP3-1Q9BYR8 98 aa8.87□□□□□ -0.99
PCDH1-201ENST00000287008 KRTAP12-2P59991 146 aa8.85□□□□□ -0.99
PCDH1-201ENST00000287008 BSNQ9UPA5 3926 aa8.79□□□□□ -1
PCDH1-201ENST00000287008 KRTAP13-4Q3LI77 160 aa8.78□□□□□ -1
PCDH1-201ENST00000287008 KRTAP12-1P59990 96 aa8.78□□□□□ -1
PCDH1-201ENST00000287008 TRRAPQ9Y4A5 3859 aa8.76□□□□□ -1.01
PCDH1-201ENST00000287008 ANK3Q12955 4377 aaKnown RBP8.75□□□□□ -1.01
PCDH1-201ENST00000287008 KRTAP4-5Q9BYR2 181 aa8.66□□□□□ -1.02
PCDH1-201ENST00000287008 KRTAP10-4P60372 401 aaPredicted RBP8.6□□□□□ -1.03
PCDH1-201ENST00000287008 KRTAP10-6P60371 365 aaPredicted RBP8.58□□□□□ -1.04
PCDH1-201ENST00000287008 KRTAP15-1Q3LI76 137 aa8.43□□□□□ -1.06
PCDH1-201ENST00000287008 VPS13CQ709C8 3753 aa8.41□□□□□ -1.06
PCDH1-201ENST00000287008 KRTAP3-3Q9BYR6 98 aa8.31□□□□□ -1.08
PCDH1-201ENST00000287008 KRTAP3-2Q9BYR7 98 aa8.28□□□□□ -1.08
PCDH1-201ENST00000287008 KRTAP10-12P60413 245 aa8.22□□□□□ -1.09
PCDH1-201ENST00000287008 HUWE1Q7Z6Z7 4374 aaKnown RBP8.19□□□□□ -1.1
PCDH1-201ENST00000287008 DNHD1Q96M86 4753 aa8.07□□□□□ -1.12
PCDH1-201ENST00000287008 ZNF469Q96JG9 3925 aaPredicted RBP8.04□□□□□ -1.12
PCDH1-201ENST00000287008 DNAH5Q8TE73 4624 aa8.03□□□□□ -1.12
PCDH1-201ENST00000287008 PLECQ15149 4684 aaKnown RBP8.03□□□□□ -1.12
PCDH1-201ENST00000287008 CRCT1Q9UGL9 99 aa7.98□□□□□ -1.13
PCDH1-201ENST00000287008 KRTAP12-3P60328 96 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms