RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 IGHV3-30-5P0DP03 117 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 KRTAP12-2P59991 146 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 ELOF1P60002 83 aaKnown RBP2.51□□□□□ -2.01
CD44-202ENST00000278385 ZNF56Q15929 161 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 LINC01556Q5JQF7 62 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 SFTA2Q6UW10 78 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 Q86TA4 180 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 BAGE2Q86Y30 109 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 WFDC10BQ8IUB3 73 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 SPACA4Q8TDM5 124 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 HECTD4Q9Y4D8 3996 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 DNAH5Q8TE73 4624 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 FRAS1Q86XX4 4008 aa2.51□□□□□ -2.01
CD44-202ENST00000278385 IGKV2D-24A0A075B6R9 120 aa2.5□□□□□ -2.01
CD44-202ENST00000278385 LOC101927531A0A1B0GV80 90 aa2.5□□□□□ -2.01
CD44-202ENST00000278385 H3BVH4 76 aa2.5□□□□□ -2.01
CD44-202ENST00000278385 SMIM13P0DJ93 91 aa2.5□□□□□ -2.01
CD44-202ENST00000278385 HIGD1CA8MV81 97 aa2.49□□□□□ -2.01
CD44-202ENST00000278385 FAM74A4Q5TZK3 123 aa2.49□□□□□ -2.01
CD44-202ENST00000278385 GNG13Q9P2W3 67 aa2.49□□□□□ -2.01
CD44-202ENST00000278385 PKD1P98161 4303 aa2.48□□□□□ -2.01
CD44-202ENST00000278385 LRCOL1A6NCL2 159 aa2.48□□□□□ -2.01
CD44-202ENST00000278385 F8WEM9 126 aa2.48□□□□□ -2.01
CD44-202ENST00000278385 PDE6GP18545 87 aa2.48□□□□□ -2.01
CD44-202ENST00000278385 C20orf197Q8N268 126 aa2.48□□□□□ -2.01
CD44-202ENST00000278385 ZNF815PA8K554 130 aa2.47□□□□□ -2.01
CD44-202ENST00000278385 KRTAP10-1P60331 282 aa2.47□□□□□ -2.01
CD44-202ENST00000278385 KIAA1109Q2LD37 5005 aa2.47□□□□□ -2.01
CD44-202ENST00000278385 RYR1P21817 5038 aa2.47□□□□□ -2.01
CD44-202ENST00000278385 JMJD7-PLA2G4BH0Y9G9 81 aa2.46□□□□□ -2.02
CD44-202ENST00000278385 APOBP04114 4563 aaKnown RBP2.46□□□□□ -2.02
CD44-202ENST00000278385 HSPG2P98160 4391 aa2.45□□□□□ -2.02
CD44-202ENST00000278385 MYMXA0A1B0GTQ4 84 aa2.45□□□□□ -2.02
CD44-202ENST00000278385 M0QY20 66 aa2.45□□□□□ -2.02
CD44-202ENST00000278385 MGPP08493 103 aa2.45□□□□□ -2.02
CD44-202ENST00000278385 PPP1R17O96001 155 aa2.44□□□□□ -2.02
CD44-202ENST00000278385 SMR3BP02814 79 aaPredicted RBP2.44□□□□□ -2.02
CD44-202ENST00000278385 ANGP03950 147 aaKnown RBP2.44□□□□□ -2.02
CD44-202ENST00000278385 KRTAP13-3Q3SY46 172 aa2.44□□□□□ -2.02
CD44-202ENST00000278385 LCE3EQ5T5B0 92 aa2.44□□□□□ -2.02
CD44-202ENST00000278385 Q5VSD8 79 aa2.44□□□□□ -2.02
CD44-202ENST00000278385 ENHOQ6UWT2 76 aa2.44□□□□□ -2.02
CD44-202ENST00000278385 CNFNQ9BYD5 112 aa2.44□□□□□ -2.02
CD44-202ENST00000278385 DNAH8Q96JB1 4490 aa2.44□□□□□ -2.02
CD44-202ENST00000278385 PKHD1P08F94 4074 aa2.43□□□□□ -2.02
CD44-202ENST00000278385 IGLV6-57P01721 117 aa2.43□□□□□ -2.02
CD44-202ENST00000278385 SPAG11BQ08648 103 aa2.43□□□□□ -2.02
CD44-202ENST00000278385 KRTAP13-2Q52LG2 175 aa2.43□□□□□ -2.02
CD44-202ENST00000278385 SPAG11AQ6PDA7 123 aa2.43□□□□□ -2.02
CD44-202ENST00000278385 Q6ZSA8 131 aa2.43□□□□□ -2.02
CD44-202ENST00000278385 AMELXQ99217 191 aa2.43□□□□□ -2.02
CD44-202ENST00000278385 IGKV2-28A0A075B6P5 120 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 IGKV3D-7A0A0C4DH55 119 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 IGKV3OR2-268A0A0C4DH90 116 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 TRBV6-5A0A0K0K1A5 114 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 A0A1W2PNN7 141 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 I3L3M4 83 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 IGKV2D-28P01615 120 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 COX7B2Q8TF08 81 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 FAT1Q14517 4588 aa2.42□□□□□ -2.02
CD44-202ENST00000278385 A0A1B0GUT8 65 aa2.41□□□□□ -2.02
CD44-202ENST00000278385 COX8AP10176 69 aa2.41□□□□□ -2.02
CD44-202ENST00000278385 KRTAP5-9P26371 169 aa2.41□□□□□ -2.02
CD44-202ENST00000278385 HAMPP81172 84 aa2.41□□□□□ -2.02
CD44-202ENST00000278385 CLPSL2Q6UWE3 100 aa2.41□□□□□ -2.02
CD44-202ENST00000278385 DEFB104AQ8WTQ1 72 aa2.41□□□□□ -2.02
CD44-202ENST00000278385 PCLOQ9Y6V0 5065 aa2.4□□□□□ -2.02
CD44-202ENST00000278385 POLR2KP53803 58 aaKnown RBP2.4□□□□□ -2.03
CD44-202ENST00000278385 Q6JHZ5 121 aa2.4□□□□□ -2.03
CD44-202ENST00000278385 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
CD44-202ENST00000278385 RPL39LQ96EH5 51 aaKnown RBP2.4□□□□□ -2.03
CD44-202ENST00000278385 V9GYV3 84 aa2.4□□□□□ -2.03
CD44-202ENST00000278385 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.39□□□□□ -2.03
CD44-202ENST00000278385 SMIM27A0A1W2PRY6 76 aa2.39□□□□□ -2.03
CD44-202ENST00000278385 IGKV2-29A2NJV5 120 aaPredicted RBP2.39□□□□□ -2.03
CD44-202ENST00000278385 LINC00959A0A1B0GUT2 108 aa2.38□□□□□ -2.03
CD44-202ENST00000278385 LEPROTL1O95214 131 aa2.38□□□□□ -2.03
CD44-202ENST00000278385 DNAL4O96015 105 aa2.38□□□□□ -2.03
CD44-202ENST00000278385 FCER1GP30273 86 aa2.38□□□□□ -2.03
CD44-202ENST00000278385 RPL37AP61513 92 aaKnown RBP2.38□□□□□ -2.03
CD44-202ENST00000278385 PRR15LQ9BU68 103 aa2.38□□□□□ -2.03
CD44-202ENST00000278385 ABCA13Q86UQ4 5058 aa2.38□□□□□ -2.03
CD44-202ENST00000278385 GVQW2A0A096LPI5 108 aaPredicted RBP2.37□□□□□ -2.03
CD44-202ENST00000278385 F8VRH5 84 aa2.37□□□□□ -2.03
CD44-202ENST00000278385 ATP5EP2Q5VTU8 51 aa2.37□□□□□ -2.03
CD44-202ENST00000278385 PLAC8Q9NZF1 115 aa2.37□□□□□ -2.03
CD44-202ENST00000278385 UBE2D4Q9Y2X8 147 aa2.37□□□□□ -2.03
CD44-202ENST00000278385 LINC01558Q9Y6Z2 57 aa2.37□□□□□ -2.03
CD44-202ENST00000278385 D6R8Y8 96 aa2.36□□□□□ -2.03
CD44-202ENST00000278385 INE1O15225 51 aa2.36□□□□□ -2.03
CD44-202ENST00000278385 C3orf79P0CE67 100 aa2.36□□□□□ -2.03
CD44-202ENST00000278385 KRTAP10-4P60372 401 aaPredicted RBP2.36□□□□□ -2.03
CD44-202ENST00000278385 COX6A2Q02221 97 aa2.36□□□□□ -2.03
CD44-202ENST00000278385 MUSTN1Q8IVN3 82 aa2.36□□□□□ -2.03
CD44-202ENST00000278385 VPS13BQ7Z7G8 4022 aa2.36□□□□□ -2.03
CD44-202ENST00000278385 MYCBP2O75592 4640 aa2.35□□□□□ -2.03
CD44-202ENST00000278385 IGKV2-24A0A0C4DH68 120 aa2.35□□□□□ -2.03
CD44-202ENST00000278385 SMIM2Q9BVW6 85 aa2.35□□□□□ -2.03
CD44-202ENST00000278385 LOC110117498A0A087WWA1 95 aa2.34□□□□□ -2.03
CD44-202ENST00000278385 K7EMI3 77 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms