RNA–Protein interactions for RNA: ENST00000266085.6

TIMP3-201, Transcript of TIMP metallopeptidase inhibitor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP3, Length 4,603 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3-201ENST00000266085 CELSR1Q9NYQ6 3014 aa9.06□□□□□ -0.96
TIMP3-201ENST00000266085 KRTAP21-3Q3LHN1 58 aa9.06□□□□□ -0.96
TIMP3-201ENST00000266085 LINC01558Q9Y6Z2 57 aa9.05□□□□□ -0.96
TIMP3-201ENST00000266085 KTN1-AS1Q86SY8 53 aa9.05□□□□□ -0.96
TIMP3-201ENST00000266085 CSAG1Q6PB30 78 aa9.03□□□□□ -0.96
TIMP3-201ENST00000266085 Q75L30 129 aa9.03□□□□□ -0.96
TIMP3-201ENST00000266085 LAMA5O15230 3695 aa9.03□□□□□ -0.96
TIMP3-201ENST00000266085 WDFY3Q8IZQ1 3526 aa9.02□□□□□ -0.97
TIMP3-201ENST00000266085 FP248Q71RG6 208 aaPredicted RBP9.01□□□□□ -0.97
TIMP3-201ENST00000266085 KRTAP29-1A8MX34 341 aaPredicted RBP9.01□□□□□ -0.97
TIMP3-201ENST00000266085 SEC61BP60468 96 aaKnown RBP8.98□□□□□ -0.97
TIMP3-201ENST00000266085 M0R2T5 61 aa8.96□□□□□ -0.97
TIMP3-201ENST00000266085 S4R3F8 94 aa8.96□□□□□ -0.98
TIMP3-201ENST00000266085 LCA10Q71F78 164 aa8.96□□□□□ -0.98
TIMP3-201ENST00000266085 Q5XG85 94 aa8.95□□□□□ -0.98
TIMP3-201ENST00000266085 TENM2Q9NT68 2774 aa8.94□□□□□ -0.98
TIMP3-201ENST00000266085 ASPMQ8IZT6 3477 aa8.94□□□□□ -0.98
TIMP3-201ENST00000266085 CAMK2N1Q7Z7J9 78 aa8.92□□□□□ -0.98
TIMP3-201ENST00000266085 DMAC1Q96GE9 116 aa8.91□□□□□ -0.98
TIMP3-201ENST00000266085 DMDP11532 3685 aa8.91□□□□□ -0.98
TIMP3-201ENST00000266085 FBN1P35555 2871 aaKnown RBP8.9□□□□□ -0.98
TIMP3-201ENST00000266085 NOTCH2NLQ7Z3S9 236 aa8.9□□□□□ -0.99
TIMP3-201ENST00000266085 ASB16-AS1Q495Z4 193 aa8.89□□□□□ -0.99
TIMP3-201ENST00000266085 Q5VV11 94 aa8.89□□□□□ -0.99
TIMP3-201ENST00000266085 KRTAP13-1Q8IUC0 172 aa8.89□□□□□ -0.99
TIMP3-201ENST00000266085 PDZD2O15018 2839 aa8.86□□□□□ -0.99
TIMP3-201ENST00000266085 OTOGQ6ZRI0 2925 aa8.85□□□□□ -0.99
TIMP3-201ENST00000266085 KRTAP13-2Q52LG2 175 aa8.84□□□□□ -0.99
TIMP3-201ENST00000266085 OXTP01178 125 aa8.83□□□□□ -1
TIMP3-201ENST00000266085 VWFP04275 2813 aa8.83□□□□□ -1
TIMP3-201ENST00000266085 RPS29P62273 56 aaKnown RBP8.82□□□□□ -1
TIMP3-201ENST00000266085 R4GN34 69 aa8.82□□□□□ -1
TIMP3-201ENST00000266085 TGP01266 2768 aa8.81□□□□□ -1
TIMP3-201ENST00000266085 ZFHX4Q86UP3 3567 aa8.77□□□□□ -1.01
TIMP3-201ENST00000266085 RPL37P61927 97 aaKnown RBP8.69□□□□□ -1.02
TIMP3-201ENST00000266085 ZFHX3Q15911 3703 aa8.68□□□□□ -1.02
TIMP3-201ENST00000266085 H1FX-AS1Q4G0G2 97 aa8.66□□□□□ -1.02
TIMP3-201ENST00000266085 M0QZ58 72 aa8.64□□□□□ -1.03
TIMP3-201ENST00000266085 PRAC1Q96KF2 57 aa8.64□□□□□ -1.03
TIMP3-201ENST00000266085 SRRM2Q9UQ35 2752 aaKnown RBP8.61□□□□□ -1.03
TIMP3-201ENST00000266085 LUZP6Q538Z0 58 aa8.61□□□□□ -1.03
TIMP3-201ENST00000266085 NBPF19A0A087WUL8 3843 aa8.61□□□□□ -1.03
TIMP3-201ENST00000266085 SMG1Q96Q15 3661 aaKnown RBP8.59□□□□□ -1.03
TIMP3-201ENST00000266085 ADM2Q7Z4H4 148 aa8.58□□□□□ -1.04
TIMP3-201ENST00000266085 SPATA8Q6RVD6 105 aa8.56□□□□□ -1.04
TIMP3-201ENST00000266085 KRTAP1-4P0C5Y4 121 aa8.52□□□□□ -1.04
TIMP3-201ENST00000266085 ROMO1P60602 79 aa8.5□□□□□ -1.05
TIMP3-201ENST00000266085 A8MUU9 505 aa8.46□□□□□ -1.06
TIMP3-201ENST00000266085 CSMD1Q96PZ7 3565 aa8.45□□□□□ -1.06
TIMP3-201ENST00000266085 C20orf166-AS1Q96NR2 134 aa8.44□□□□□ -1.06
TIMP3-201ENST00000266085 CSMD2Q7Z408 3487 aa8.42□□□□□ -1.06
TIMP3-201ENST00000266085 PLAC4Q8WY50 150 aa8.37□□□□□ -1.07
TIMP3-201ENST00000266085 CUBNO60494 3623 aa8.36□□□□□ -1.07
TIMP3-201ENST00000266085 SVEP1Q4LDE5 3571 aa8.34□□□□□ -1.07
TIMP3-201ENST00000266085 A8MU10 97 aa8.34□□□□□ -1.07
TIMP3-201ENST00000266085 XP32Q5T750 250 aa8.28□□□□□ -1.08
TIMP3-201ENST00000266085 FBN3Q75N90 2809 aa8.26□□□□□ -1.09
TIMP3-201ENST00000266085 SPENQ96T58 3664 aaKnown RBP8.23□□□□□ -1.09
TIMP3-201ENST00000266085 A6NN06 94 aa8.22□□□□□ -1.09
TIMP3-201ENST00000266085 A0A1B0GVY2 172 aa8.19□□□□□ -1.1
TIMP3-201ENST00000266085 KRTAP16-1A8MUX0 517 aa8.16□□□□□ -1.1
TIMP3-201ENST00000266085 TRRAPQ9Y4A5 3859 aa8.15□□□□□ -1.1
TIMP3-201ENST00000266085 TPRXLQ17RH7 258 aa8.14□□□□□ -1.11
TIMP3-201ENST00000266085 COL7A1Q02388 2944 aa8.14□□□□□ -1.11
TIMP3-201ENST00000266085 ANK3Q12955 4377 aaKnown RBP8.11□□□□□ -1.11
TIMP3-201ENST00000266085 KRTAP25-1Q3LHN0 102 aa8.1□□□□□ -1.11
TIMP3-201ENST00000266085 BSNQ9UPA5 3926 aa8.1□□□□□ -1.11
TIMP3-201ENST00000266085 MEGF8Q7Z7M0 2845 aa8.08□□□□□ -1.12
TIMP3-201ENST00000266085 KRTAP10-8P60410 259 aa8.08□□□□□ -1.12
TIMP3-201ENST00000266085 KRTAP13-3Q3SY46 172 aa8.08□□□□□ -1.12
TIMP3-201ENST00000266085 A0A0A0MQY5 61 aa8.05□□□□□ -1.12
TIMP3-201ENST00000266085 TNP1P09430 55 aa7.98□□□□□ -1.13
TIMP3-201ENST00000266085 H3BS24 57 aa7.96□□□□□ -1.14
TIMP3-201ENST00000266085 H0YAA0 97 aa7.9□□□□□ -1.15
TIMP3-201ENST00000266085 P0C880 135 aa7.82□□□□□ -1.16
TIMP3-201ENST00000266085 KRTAP10-10P60014 251 aa7.78□□□□□ -1.16
TIMP3-201ENST00000266085 PP632Q6XCG6 107 aa7.75□□□□□ -1.17
TIMP3-201ENST00000266085 C10orf95Q9H7T3 257 aa7.72□□□□□ -1.17
TIMP3-201ENST00000266085 VPS13CQ709C8 3753 aa7.72□□□□□ -1.17
TIMP3-201ENST00000266085 NDUFAF8A1L188 74 aa7.68□□□□□ -1.18
TIMP3-201ENST00000266085 PRO2289Q9P1D8 64 aa7.55□□□□□ -1.2
TIMP3-201ENST00000266085 MT1HL1P0DM35 61 aa7.54□□□□□ -1.2
TIMP3-201ENST00000266085 KRTAP3-1Q9BYR8 98 aa7.54□□□□□ -1.2
TIMP3-201ENST00000266085 ZNF469Q96JG9 3925 aaPredicted RBP7.53□□□□□ -1.2
TIMP3-201ENST00000266085 HUWE1Q7Z6Z7 4374 aaKnown RBP7.51□□□□□ -1.21
TIMP3-201ENST00000266085 KRTAP10-4P60372 401 aaPredicted RBP7.44□□□□□ -1.22
TIMP3-201ENST00000266085 KRTAP12-2P59991 146 aa7.42□□□□□ -1.22
TIMP3-201ENST00000266085 KRTAP4-5Q9BYR2 181 aa7.41□□□□□ -1.22
TIMP3-201ENST00000266085 KRTAP12-1P59990 96 aa7.36□□□□□ -1.23
TIMP3-201ENST00000266085 DNHD1Q96M86 4753 aa7.36□□□□□ -1.23
TIMP3-201ENST00000266085 CSMD3Q7Z407 3707 aa7.32□□□□□ -1.24
TIMP3-201ENST00000266085 KRTAP10-6P60371 365 aaPredicted RBP7.28□□□□□ -1.24
TIMP3-201ENST00000266085 AKAP9Q99996 3911 aa7.28□□□□□ -1.24
TIMP3-201ENST00000266085 KRTAP13-4Q3LI77 160 aa7.27□□□□□ -1.25
TIMP3-201ENST00000266085 DNAH9Q9NYC9 4486 aa7.27□□□□□ -1.25
TIMP3-201ENST00000266085 DNAH5Q8TE73 4624 aa7.18□□□□□ -1.26
TIMP3-201ENST00000266085 PLECQ15149 4684 aaKnown RBP7.09□□□□□ -1.27
TIMP3-201ENST00000266085 KRTAP3-3Q9BYR6 98 aa7.09□□□□□ -1.27
TIMP3-201ENST00000266085 DNAH11Q96DT5 4516 aa7.06□□□□□ -1.28
TIMP3-201ENST00000266085 KRTAP3-2Q9BYR7 98 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms