RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 PRRC2CQ9Y520 2896 aaKnown RBP5.47□□□□□ -1.53
VCL-206ENST00000623461 HELZ2Q9BYK8 2649 aaKnown RBP5.47□□□□□ -1.53
VCL-206ENST00000623461 A0A0A0MQY5 61 aa5.46□□□□□ -1.53
VCL-206ENST00000623461 ATRQ13535 2644 aa5.46□□□□□ -1.54
VCL-206ENST00000623461 DMBT1Q9UGM3 2413 aaPredicted RBP5.46□□□□□ -1.54
VCL-206ENST00000623461 KRTAP26-1Q6PEX3 210 aa5.45□□□□□ -1.54
VCL-206ENST00000623461 SPATA8Q6RVD6 105 aa5.45□□□□□ -1.54
VCL-206ENST00000623461 CAMK2N1Q7Z7J9 78 aa5.44□□□□□ -1.54
VCL-206ENST00000623461 ROMO1P60602 79 aa5.43□□□□□ -1.54
VCL-206ENST00000623461 SEC61BP60468 96 aaKnown RBP5.42□□□□□ -1.54
VCL-206ENST00000623461 DNAH12Q6ZR08 3092 aa5.41□□□□□ -1.54
VCL-206ENST00000623461 TRANK1O15050 2925 aa5.41□□□□□ -1.54
VCL-206ENST00000623461 A0A087X002 238 aa5.41□□□□□ -1.54
VCL-206ENST00000623461 KRTAP4-16G5E9R7 235 aaPredicted RBP5.4□□□□□ -1.54
VCL-206ENST00000623461 SMR3BP02814 79 aaPredicted RBP5.4□□□□□ -1.54
VCL-206ENST00000623461 KRTAP1-3Q8IUG1 177 aa5.39□□□□□ -1.55
VCL-206ENST00000623461 AKAP13Q12802 2813 aa5.39□□□□□ -1.55
VCL-206ENST00000623461 RPL37P61927 97 aaKnown RBP5.38□□□□□ -1.55
VCL-206ENST00000623461 H1FX-AS1Q4G0G2 97 aa5.38□□□□□ -1.55
VCL-206ENST00000623461 FLNAP21333 2647 aaKnown RBP5.38□□□□□ -1.55
VCL-206ENST00000623461 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.37□□□□□ -1.55
VCL-206ENST00000623461 PLAC8Q9NZF1 115 aa5.37□□□□□ -1.55
VCL-206ENST00000623461 ITPR3Q14573 2671 aa5.37□□□□□ -1.55
VCL-206ENST00000623461 KRTAP1-1Q07627 177 aa5.35□□□□□ -1.55
VCL-206ENST00000623461 KRTAP25-1Q3LHN0 102 aa5.35□□□□□ -1.55
VCL-206ENST00000623461 KRTAP16-1A8MUX0 517 aa5.34□□□□□ -1.56
VCL-206ENST00000623461 NBEAL1Q6ZS30 2694 aa5.33□□□□□ -1.56
VCL-206ENST00000623461 S4R3F8 94 aa5.32□□□□□ -1.56
VCL-206ENST00000623461 PLAC4Q8WY50 150 aa5.28□□□□□ -1.56
VCL-206ENST00000623461 UTRNP46939 3433 aa5.27□□□□□ -1.57
VCL-206ENST00000623461 A8MU10 97 aa5.26□□□□□ -1.57
VCL-206ENST00000623461 CENPEQ02224 2701 aa5.25□□□□□ -1.57
VCL-206ENST00000623461 UNC79Q9P2D8 2635 aa5.25□□□□□ -1.57
VCL-206ENST00000623461 ADM2Q7Z4H4 148 aa5.24□□□□□ -1.57
VCL-206ENST00000623461 TEX15Q9BXT5 2789 aa5.24□□□□□ -1.57
VCL-206ENST00000623461 R4GN34 69 aa5.24□□□□□ -1.57
VCL-206ENST00000623461 PANO1I0J062 215 aa5.23□□□□□ -1.57
VCL-206ENST00000623461 C5orf42Q9H799 3197 aa5.22□□□□□ -1.57
VCL-206ENST00000623461 SETXQ7Z333 2677 aaKnown RBP5.2□□□□□ -1.58
VCL-206ENST00000623461 NOTCH2NLQ7Z3S9 236 aa5.18□□□□□ -1.58
VCL-206ENST00000623461 KRTAP1-5Q9BYS1 174 aa5.18□□□□□ -1.58
VCL-206ENST00000623461 PCNTO95613 3336 aa5.17□□□□□ -1.58
VCL-206ENST00000623461 Q5VSD8 79 aa5.15□□□□□ -1.58
VCL-206ENST00000623461 CEP350Q5VT06 3117 aa5.15□□□□□ -1.59
VCL-206ENST00000623461 TEP1Q99973 2627 aaKnown RBP5.14□□□□□ -1.59
VCL-206ENST00000623461 NDUFAF8A1L188 74 aa5.13□□□□□ -1.59
VCL-206ENST00000623461 STAB2Q8WWQ8 2551 aa5.13□□□□□ -1.59
VCL-206ENST00000623461 COL6A5A8TX70 2615 aa5.13□□□□□ -1.59
VCL-206ENST00000623461 NOTCH1P46531 2555 aa5.13□□□□□ -1.59
VCL-206ENST00000623461 BAHCC1Q9P281 2608 aa5.13□□□□□ -1.59
VCL-206ENST00000623461 CHD6Q8TD26 2715 aa5.12□□□□□ -1.59
VCL-206ENST00000623461 KRTAP7-1Q8IUC3 87 aa5.12□□□□□ -1.59
VCL-206ENST00000623461 ITPR2Q14571 2701 aa5.12□□□□□ -1.59
VCL-206ENST00000623461 ZNF292O60281 2723 aa5.11□□□□□ -1.59
VCL-206ENST00000623461 A8MUU9 505 aa5.09□□□□□ -1.59
VCL-206ENST00000623461 M0QZ58 72 aa5.09□□□□□ -1.6
VCL-206ENST00000623461 KRTAP11-1Q8IUC1 163 aa5.09□□□□□ -1.6
VCL-206ENST00000623461 RPS29P62273 56 aaKnown RBP5.08□□□□□ -1.6
VCL-206ENST00000623461 A0A0C4DFX4 3053 aa5.08□□□□□ -1.6
VCL-206ENST00000623461 KRTAP13-1Q8IUC0 172 aa5.07□□□□□ -1.6
VCL-206ENST00000623461 CHD7Q9P2D1 2997 aa5.06□□□□□ -1.6
VCL-206ENST00000623461 CHD9Q3L8U1 2897 aa5.03□□□□□ -1.6
VCL-206ENST00000623461 LAMA2P24043 3122 aaKnown RBP5□□□□□ -1.61
VCL-206ENST00000623461 KRTAP10-1P60331 282 aa5□□□□□ -1.61
VCL-206ENST00000623461 CFAP54Q96N23 3096 aa4.99□□□□□ -1.61
VCL-206ENST00000623461 C20orf166-AS1Q96NR2 134 aa4.98□□□□□ -1.61
VCL-206ENST00000623461 KRTAP10-2P60368 255 aa4.96□□□□□ -1.61
VCL-206ENST00000623461 KRTAP21-3Q3LHN1 58 aa4.96□□□□□ -1.61
VCL-206ENST00000623461 IGSF10Q6WRI0 2623 aa4.95□□□□□ -1.62
VCL-206ENST00000623461 NSD1Q96L73 2696 aaPredicted RBP4.95□□□□□ -1.62
VCL-206ENST00000623461 Q6ZRN7 208 aaPredicted RBP4.95□□□□□ -1.62
VCL-206ENST00000623461 KRTAP13-2Q52LG2 175 aa4.93□□□□□ -1.62
VCL-206ENST00000623461 MKI67P46013 3256 aaKnown RBP4.92□□□□□ -1.62
VCL-206ENST00000623461 GCN1Q92616 2671 aaKnown RBP4.91□□□□□ -1.62
VCL-206ENST00000623461 H0YAA0 97 aa4.91□□□□□ -1.62
VCL-206ENST00000623461 HTTP42858 3142 aa4.89□□□□□ -1.63
VCL-206ENST00000623461 XIRP2A4UGR9 3374 aa4.87□□□□□ -1.63
VCL-206ENST00000623461 PP632Q6XCG6 107 aa4.87□□□□□ -1.63
VCL-206ENST00000623461 MAP1AP78559 2803 aaPredicted RBP4.87□□□□□ -1.63
VCL-206ENST00000623461 MGAQ8IWI9 3026 aa4.85□□□□□ -1.63
VCL-206ENST00000623461 P0C880 135 aa4.84□□□□□ -1.64
VCL-206ENST00000623461 VPS13AQ96RL7 3174 aa4.83□□□□□ -1.64
VCL-206ENST00000623461 C10orf95Q9H7T3 257 aa4.82□□□□□ -1.64
VCL-206ENST00000623461 APCP25054 2843 aa4.81□□□□□ -1.64
VCL-206ENST00000623461 TNP1P09430 55 aa4.81□□□□□ -1.64
VCL-206ENST00000623461 LAMA3Q16787 3333 aa4.8□□□□□ -1.64
VCL-206ENST00000623461 RANBP2P49792 3224 aaKnown RBP4.8□□□□□ -1.64
VCL-206ENST00000623461 TRIOO75962 3097 aa4.8□□□□□ -1.64
VCL-206ENST00000623461 PRUNE2Q8WUY3 3088 aa4.79□□□□□ -1.64
VCL-206ENST00000623461 BRCA2P51587 3418 aa4.78□□□□□ -1.64
VCL-206ENST00000623461 PRO2289Q9P1D8 64 aa4.76□□□□□ -1.65
VCL-206ENST00000623461 UTP20O75691 2785 aaKnown RBP4.75□□□□□ -1.65
VCL-206ENST00000623461 CELSR3Q9NYQ7 3312 aa4.75□□□□□ -1.65
VCL-206ENST00000623461 KRTAP13-3Q3SY46 172 aa4.75□□□□□ -1.65
VCL-206ENST00000623461 FRYQ5TBA9 3013 aa4.74□□□□□ -1.65
VCL-206ENST00000623461 WDFY4Q6ZS81 3184 aa4.73□□□□□ -1.65
VCL-206ENST00000623461 DNAH14Q0VDD8 3507 aa4.72□□□□□ -1.65
VCL-206ENST00000623461 CDH23Q9H251 3354 aa4.7□□□□□ -1.66
VCL-206ENST00000623461 NBEAL2Q6ZNJ1 2754 aa4.7□□□□□ -1.66
VCL-206ENST00000623461 DSPP15924 2871 aaKnown RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 309.8 ms